Wall clock time and date at job start Tue Mar 31 2020 07:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00218 * 2 1 4 4 C 1.50705 * 109.47183 * 293.95096 * 3 2 1 5 5 C 1.38226 * 119.98689 * 104.99399 * 4 3 2 6 6 C 1.38185 * 120.04888 * 179.70234 * 5 4 3 7 7 C 1.38503 * 120.02702 * 0.28222 * 6 5 4 8 8 F 1.35092 * 120.01297 * 179.97438 * 7 6 5 9 9 C 1.38398 * 119.97068 * 359.97438 * 7 6 5 10 10 C 1.38445 * 119.95077 * 359.97438 * 9 7 6 11 11 F 1.35095 * 120.01243 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99360 * 123.94858 * 2 1 3 13 13 C 1.53000 * 109.46988 * 66.05127 * 12 2 1 14 14 H 1.09003 * 109.47109 * 304.99092 * 13 12 2 15 15 C 1.47202 * 109.47427 * 64.99561 * 13 12 2 16 16 N 3.66498 * 112.02679 * 199.40552 * 2 1 3 17 17 C 1.53003 * 109.47065 * 184.99866 * 13 12 2 18 18 C 1.50704 * 109.47089 * 175.00049 * 17 13 12 19 19 H 1.07999 * 120.00284 * 359.97438 * 18 17 13 20 20 C 1.37876 * 119.99906 * 179.97438 * 18 17 13 21 21 N 1.31523 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00056 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46658 * 60.00171 * 22 20 18 24 24 H 1.48503 * 109.47187 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46922 * 300.00095 * 22 20 18 26 26 H 1.09007 * 109.46562 * 60.00287 * 1 2 3 27 27 H 1.09002 * 109.47445 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47358 * 300.00529 * 1 2 3 29 29 H 1.08999 * 109.47218 * 173.94912 * 3 2 1 30 30 H 1.09004 * 109.47455 * 53.94759 * 3 2 1 31 31 H 1.08002 * 119.97943 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.99091 * 180.30236 * 6 5 4 33 33 H 1.08002 * 120.02147 * 179.97438 * 9 7 6 34 34 H 1.09006 * 109.46996 * 186.04417 * 12 2 1 35 35 H 1.08992 * 109.47707 * 306.04464 * 12 2 1 36 36 H 1.09000 * 109.46663 * 294.99436 * 17 13 12 37 37 H 1.08997 * 109.47378 * 54.99402 * 17 13 12 38 38 H 0.96995 * 119.99772 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 6 0.6299 2.9932 -1.3299 6 6 0.3043 3.6181 -2.5187 7 6 0.9831 3.2926 -3.6813 8 9 0.6642 3.9033 -4.8434 9 6 1.9881 2.3416 -3.6520 10 6 2.3141 1.7170 -2.4602 11 9 3.2953 0.7889 -2.4301 12 6 1.9953 -0.7659 1.1377 13 6 1.6313 -2.2426 0.9705 14 1 0.5530 -2.3388 0.8434 15 6 2.3155 -2.7855 -0.2144 16 7 2.8435 -3.2045 -1.1288 17 6 2.0697 -3.0198 2.2134 18 6 1.6028 -4.4484 2.1030 19 1 1.0486 -4.7698 1.2336 20 6 1.8834 -5.3452 3.1120 21 7 2.5588 -4.9540 4.1705 22 14 1.3041 -7.1159 2.9755 23 1 1.8986 -7.7393 1.7660 24 1 1.7307 -7.8706 4.1812 25 1 -0.1769 -7.1455 2.8707 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.0797 1.3443 0.1083 30 1 1.5611 1.9274 0.8309 31 1 0.0999 3.2476 -0.4239 32 1 -0.4795 4.3608 -2.5412 33 1 2.5176 2.0869 -4.5581 34 1 3.0797 -0.6611 1.1758 35 1 1.5610 -0.3872 2.0628 36 1 3.1567 -2.9978 2.2909 37 1 1.6328 -2.5622 3.1009 38 1 2.7558 -5.5849 4.8805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073895119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:14 Heat of formation + Delta-G solvation = -60.417443 kcal Electronic energy + Delta-G solvation = -22704.383036 eV Core-core repulsion = 18988.949179 eV Total energy + Delta-G solvation = -3715.433857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.01544 -49.93207 -40.27592 -38.99756 -37.10571 -35.48330 -33.76494 -32.11678 -31.62534 -28.77985 -28.02090 -25.92859 -24.15288 -23.78830 -23.03074 -21.92426 -19.16138 -18.52082 -18.27224 -18.16232 -17.13769 -16.96386 -16.73217 -16.53968 -16.32667 -16.01979 -15.83702 -15.47765 -15.20163 -14.77895 -14.58755 -14.30870 -14.18170 -13.76381 -13.70100 -13.23453 -13.02461 -13.00613 -12.82854 -12.70880 -12.56984 -12.49208 -12.43010 -12.27158 -12.22668 -11.75248 -11.35236 -11.12205 -10.53801 -10.05560 -9.63029 -9.18136 -8.18662 -6.26631 -0.06769 0.04575 1.41059 1.43308 1.49994 2.08428 2.16641 2.32697 2.42462 2.90487 3.08292 3.16947 3.37950 3.47753 3.61905 3.67068 3.94662 4.10659 4.18125 4.33973 4.42603 4.53307 4.69979 4.77463 4.81315 4.83801 4.88739 4.93663 4.99943 5.01790 5.08827 5.20803 5.26715 5.47869 5.63643 5.78679 5.80266 6.05964 6.19085 6.23555 6.84325 6.95626 7.41769 8.91984 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.032135 B = 0.003071 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.107680 B = 9116.726901 C = 9365.561819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.562 5.562 3 C 0.096 3.904 4 C -0.125 4.125 5 C -0.044 4.044 6 C -0.154 4.154 7 C 0.116 3.884 8 F -0.139 7.139 9 C -0.207 4.207 10 C 0.127 3.873 11 F -0.143 7.143 12 C 0.075 3.925 13 C 0.020 3.980 14 H 0.118 0.882 15 C 0.265 3.735 16 N -0.518 5.518 17 C 0.040 3.960 18 C -0.540 4.540 19 H 0.052 0.948 20 C 0.013 3.987 21 N -0.923 5.923 22 Si 0.946 3.054 23 H -0.283 1.283 24 H -0.281 1.281 25 H -0.262 1.262 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.177 0.823 32 H 0.170 0.830 33 H 0.145 0.855 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.000 1.000 37 H 0.039 0.961 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 22.028 -8.081 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.286 5.286 3 C -0.030 4.030 4 C -0.126 4.126 5 C -0.062 4.062 6 C -0.173 4.173 7 C 0.096 3.904 8 F -0.118 7.118 9 C -0.227 4.227 10 C 0.107 3.893 11 F -0.121 7.121 12 C -0.054 4.054 13 C -0.002 4.002 14 H 0.136 0.864 15 C -0.051 4.051 16 N -0.195 5.195 17 C 0.001 3.999 18 C -0.578 4.578 19 H 0.070 0.930 20 C -0.186 4.186 21 N -0.562 5.562 22 Si 0.772 3.228 23 H -0.209 1.209 24 H -0.207 1.207 25 H -0.186 1.186 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.194 0.806 32 H 0.188 0.812 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.018 0.982 37 H 0.057 0.943 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.185 21.090 -9.762 24.049 hybrid contribution -0.009 -1.042 0.540 1.174 sum -6.194 20.049 -9.222 22.921 Atomic orbital electron populations 1.22521 0.85975 1.02607 1.01830 1.61905 1.09523 1.13293 1.43878 1.20978 1.00834 0.87842 0.93387 1.20080 0.98408 0.99794 0.94350 1.21169 0.93615 0.92309 0.99120 1.21497 1.02134 1.03121 0.90524 1.17483 0.96314 0.94061 0.82521 1.91511 1.91827 1.81363 1.47087 1.21127 1.01915 1.00678 0.98976 1.17476 0.88553 0.88935 0.94347 1.91531 1.59831 1.63597 1.97169 1.22056 1.00748 0.89885 0.92715 1.19260 0.99716 0.94336 0.86867 0.86436 1.29436 0.92007 0.90559 0.93114 1.80978 1.11869 1.12235 1.14452 1.18980 0.95896 0.93479 0.91567 1.21526 1.35528 0.96444 1.04320 0.92973 1.25686 0.95267 1.02472 0.95194 1.70019 1.40582 1.36578 1.09058 0.85783 0.79439 0.80420 0.77148 1.20913 1.20673 1.18634 0.91056 0.91800 0.92771 0.90457 0.89892 0.80575 0.81211 0.83697 0.90871 0.90242 0.98189 0.94305 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.15 127.69 1.17 1.52 16 2 N -0.56 -13.45 4.45 -927.04 -4.13 -17.58 16 3 C 0.10 1.80 4.77 85.56 0.41 2.21 16 4 C -0.12 -2.28 4.43 -19.81 -0.09 -2.37 16 5 C -0.04 -0.51 9.12 22.25 0.20 -0.31 16 6 C -0.15 -1.88 10.03 22.32 0.22 -1.66 16 7 C 0.12 2.04 7.30 22.37 0.16 2.20 16 8 F -0.14 -2.63 17.27 44.97 0.78 -1.85 16 9 C -0.21 -4.31 10.01 22.36 0.22 -4.09 16 10 C 0.13 2.98 7.24 22.37 0.16 3.14 16 11 F -0.14 -4.33 16.76 44.97 0.75 -3.58 16 12 C 0.07 2.02 4.32 86.30 0.37 2.40 16 13 C 0.02 0.71 2.14 -12.60 -0.03 0.69 16 14 H 0.12 3.84 6.26 -2.39 -0.01 3.82 16 15 C 0.26 11.29 13.67 89.44 1.22 12.51 16 16 N -0.52 -24.45 18.54 20.01 0.37 -24.08 16 17 C 0.04 1.81 4.42 29.85 0.13 1.94 16 18 C -0.54 -28.59 8.60 25.60 0.22 -28.37 16 19 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 20 C 0.01 0.70 5.46 84.65 0.46 1.17 16 21 N -0.92 -52.71 13.29 21.45 0.28 -52.42 16 22 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 25 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 26 H 0.07 1.27 6.88 -2.38 -0.02 1.26 16 27 H 0.06 1.40 6.21 -2.39 -0.01 1.39 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 1.61 7.87 -2.39 -0.02 1.59 16 30 H 0.08 1.05 7.93 -2.38 -0.02 1.03 16 31 H 0.18 0.86 8.00 -2.91 -0.02 0.84 16 32 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.07 2.09 7.93 -2.38 -0.02 2.07 16 35 H 0.08 1.80 8.12 -2.39 -0.02 1.78 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -67.66 337.46 6.01 -61.65 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 1.08 Total: 1.45 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 4.85 Total: -9.02 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -3.47 Total: -94.09 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 1.53 Total: -5.42 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -67.66 6.01 -61.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073895119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.230 kcal (2) G-P(sol) polarization free energy of solvation -67.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds