Wall clock time and date at job start Tue Mar 31 2020 07:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46663 * 2 1 4 4 C 1.50693 * 109.47330 * 120.00042 * 2 1 3 5 5 C 1.38246 * 119.98538 * 79.72761 * 4 2 1 6 6 C 1.38212 * 120.01299 * 180.27739 * 5 4 2 7 7 C 1.38352 * 119.98874 * 359.97438 * 6 5 4 8 8 Cl 1.73601 * 120.01225 * 179.97438 * 7 6 5 9 9 C 1.38349 * 119.97007 * 0.02562 * 7 6 5 10 10 C 1.38210 * 119.99111 * 0.02562 * 9 7 6 11 11 N 1.46903 * 109.47266 * 240.00561 * 2 1 3 12 12 C 1.46898 * 111.00065 * 184.29729 * 11 2 1 13 13 C 1.53235 * 109.34103 * 172.74412 * 12 11 2 14 14 N 1.47086 * 108.52129 * 53.83015 * 13 12 11 15 15 C 1.36939 * 120.88015 * 128.83679 * 14 13 12 16 16 H 1.07994 * 119.99516 * 206.56939 * 15 14 13 17 17 C 1.38806 * 119.99886 * 26.56658 * 15 14 13 18 18 N 1.31619 * 120.00043 * 17.01873 * 17 15 14 19 19 Si 1.86801 * 119.99908 * 197.01617 * 17 15 14 20 20 H 1.48499 * 109.46956 * 90.00403 * 19 17 15 21 21 H 1.48505 * 109.47198 * 210.00333 * 19 17 15 22 22 H 1.48498 * 109.46935 * 330.00175 * 19 17 15 23 23 C 1.47079 * 118.23512 * 308.81631 * 14 13 12 24 24 C 1.46905 * 110.99937 * 59.99539 * 11 2 1 25 25 H 1.08999 * 109.47334 * 59.99823 * 1 2 3 26 26 H 1.08995 * 109.46890 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47167 * 299.99451 * 1 2 3 28 28 H 1.07998 * 119.99448 * 0.27809 * 5 4 2 29 29 H 1.08003 * 120.00259 * 180.02562 * 6 5 4 30 30 H 1.08005 * 120.00309 * 180.02562 * 9 7 6 31 31 H 1.07995 * 119.99689 * 179.97438 * 10 9 7 32 32 H 1.08994 * 109.49644 * 292.70604 * 12 11 2 33 33 H 1.09006 * 109.49181 * 52.78768 * 12 11 2 34 34 H 1.09009 * 109.62740 * 294.12454 * 13 12 11 35 35 H 1.08997 * 109.63114 * 173.54568 * 13 12 11 36 36 H 0.97002 * 120.00022 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.63367 * 291.47060 * 23 14 13 38 38 H 1.09004 * 109.62629 * 170.89142 * 23 14 13 39 39 H 1.08999 * 109.49024 * 307.21585 * 24 11 2 40 40 H 1.09001 * 109.48842 * 67.29761 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.0614 -2.0920 1.2670 6 6 2.5167 -2.7442 2.3974 7 6 2.9439 -2.0141 3.4921 8 17 3.5152 -2.8326 4.9124 9 6 2.9146 -0.6314 3.4548 10 6 2.4582 0.0197 2.3244 11 7 2.0197 -0.6924 -1.1995 12 6 3.4846 -0.8016 -1.1832 13 6 3.9408 -1.6825 -2.3511 14 7 3.3714 -1.1415 -3.5946 15 6 4.1661 -0.8927 -4.6816 16 1 3.8792 -0.1380 -5.3988 17 6 5.3405 -1.6105 -4.8615 18 7 5.5320 -2.7346 -4.2042 19 14 6.6491 -0.9811 -6.0367 20 1 7.5924 -0.1008 -5.3015 21 1 7.3918 -2.1310 -6.6125 22 1 6.0035 -0.2113 -7.1301 23 6 1.9255 -0.8754 -3.6397 24 6 1.5486 -0.0262 -2.4211 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.7283 -2.6619 0.4123 29 1 2.5396 -3.8236 2.4257 30 1 3.2484 -0.0609 4.3090 31 1 2.4349 1.0990 2.2953 32 1 3.9244 0.1907 -1.2826 33 1 3.8054 -1.2496 -0.2427 34 1 3.5876 -2.7027 -2.2000 35 1 5.0290 -1.6742 -2.4126 36 1 6.3526 -3.2364 -4.3302 37 1 1.3786 -1.8178 -3.6126 38 1 1.6814 -0.3333 -4.5534 39 1 0.4655 0.0882 -2.3784 40 1 2.0155 0.9553 -2.5032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075863298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:23 Heat of formation + Delta-G solvation = 50.456577 kcal Electronic energy + Delta-G solvation = -21707.713901 eV Core-core repulsion = 18548.884582 eV Total energy + Delta-G solvation = -3158.829319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85811 -37.96936 -36.49946 -34.93236 -32.29566 -31.10068 -30.47708 -30.29347 -28.62382 -26.13968 -23.85664 -22.92122 -22.60724 -22.01197 -20.21862 -19.06152 -17.12661 -16.87119 -15.75179 -15.55752 -14.90451 -14.45488 -14.26595 -14.06881 -13.69738 -13.51764 -13.37246 -13.33498 -13.13379 -12.69909 -12.37666 -12.00475 -11.81692 -11.56685 -11.34500 -11.15943 -11.09543 -10.86331 -10.81600 -10.67188 -10.42453 -10.27904 -10.04722 -9.72016 -9.58281 -9.00418 -8.52215 -8.49343 -7.84936 -6.66057 -5.77322 -3.18528 1.13612 1.31899 2.09469 3.38201 3.45096 3.46230 3.62749 4.26913 4.50860 4.72018 4.82789 4.88848 5.28475 5.32472 5.39025 5.42263 5.43725 5.49449 5.65942 5.73956 5.85220 5.89993 5.94634 6.04954 6.16664 6.18649 6.21244 6.24147 6.33492 6.38909 6.54287 6.62589 6.71954 6.82939 6.92850 7.25813 7.59773 7.65212 7.71381 7.82709 8.44339 9.22178 9.85640 10.43892 11.31391 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.004057 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.533005 B = 6899.258248 C = 7913.558150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.114 3.886 3 H 0.043 0.957 4 C -0.064 4.064 5 C -0.075 4.075 6 C -0.113 4.113 7 C -0.039 4.039 8 Cl -0.082 7.082 9 C -0.115 4.115 10 C -0.108 4.108 11 N -0.524 5.524 12 C 0.034 3.966 13 C 0.180 3.820 14 N -0.595 5.595 15 C -0.253 4.253 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.150 3.850 24 C 0.041 3.959 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.144 0.856 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.087 0.913 36 H 0.254 0.746 37 H 0.025 0.975 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 4.038 15.054 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.006 3.994 3 H 0.061 0.939 4 C -0.064 4.064 5 C -0.093 4.093 6 C -0.132 4.132 7 C -0.065 4.065 8 Cl -0.053 7.053 9 C -0.133 4.133 10 C -0.127 4.127 11 N -0.249 5.249 12 C -0.095 4.095 13 C 0.054 3.946 14 N -0.319 5.319 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.023 3.977 24 C -0.088 4.088 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.571 3.378 15.129 17.713 hybrid contribution 1.238 1.034 -0.382 1.657 sum -7.333 4.412 14.747 17.050 Atomic orbital electron populations 1.21859 0.93629 1.02779 1.01418 1.20574 0.95468 0.94790 0.88613 0.93943 1.19942 0.97491 0.94119 0.94855 1.21138 0.96959 0.94067 0.97144 1.21119 0.99536 1.00437 0.92118 1.20915 1.03515 0.92777 0.89325 1.98354 1.87834 1.79425 1.39703 1.20916 1.01136 0.92216 0.99081 1.20965 0.99169 0.99922 0.92605 1.62054 1.11863 1.50617 1.00417 1.22942 0.85766 0.99760 1.01036 1.20841 0.99207 0.92817 0.81724 1.44132 1.01288 1.75687 1.10764 1.19203 1.02405 1.14189 1.02417 0.91664 1.25007 1.00354 0.95197 0.99076 1.70027 1.26118 1.13426 1.45174 0.86299 0.82070 0.77865 0.80598 1.21527 1.21736 1.20479 1.20966 0.86698 0.96206 0.93839 1.22703 0.98598 0.96254 0.91234 0.91951 0.91598 0.92640 0.83860 0.85059 0.85346 0.85545 0.95913 0.91859 0.95652 0.89480 0.93631 0.95690 0.92694 0.91502 0.95482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.95 37.16 0.33 -1.26 16 2 C 0.11 1.55 2.28 -68.87 -0.16 1.40 16 3 H 0.04 0.59 8.00 -51.93 -0.42 0.17 16 4 C -0.06 -0.83 3.65 -104.62 -0.38 -1.21 16 5 C -0.07 -1.00 8.14 -39.59 -0.32 -1.32 16 6 C -0.11 -1.42 9.83 -39.55 -0.39 -1.81 16 7 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 8 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 9 C -0.11 -1.30 9.83 -39.55 -0.39 -1.69 16 10 C -0.11 -1.26 9.67 -39.59 -0.38 -1.64 16 11 N -0.52 -8.81 3.84 -227.73 -0.88 -9.69 16 12 C 0.03 0.66 5.23 -3.70 -0.02 0.64 16 13 C 0.18 4.33 5.42 -3.60 -0.02 4.31 16 14 N -0.60 -14.98 3.04 -172.01 -0.52 -15.51 16 15 C -0.25 -6.95 9.63 -15.06 -0.15 -7.10 16 16 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 18 N -0.90 -26.26 11.15 55.49 0.62 -25.64 16 19 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.15 3.12 6.69 -3.60 -0.02 3.10 16 24 C 0.04 0.71 5.40 -3.70 -0.02 0.69 16 25 H 0.06 0.69 6.25 -51.93 -0.32 0.36 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.14 2.04 7.72 -52.49 -0.41 1.64 16 29 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 30 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.13 1.24 8.03 -52.49 -0.42 0.82 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 1.17 5.94 -51.93 -0.31 0.86 16 34 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 1.11 7.95 -51.93 -0.41 0.69 16 39 H 0.07 0.97 5.95 -51.93 -0.31 0.66 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 331.01 15.07 4.99 4.99 Total: -1.00 -29.03 331.01 -10.42 -39.45 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.85 Total: -1.26 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -2.25 Total: -6.64 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.78 Total: -50.84 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.03 -10.42 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075863298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.911 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds