Wall clock time and date at job start Tue Mar 31 2020 07:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99727 * 2 1 4 4 C 1.50697 * 109.47024 * 66.04608 * 3 2 1 5 5 C 1.38264 * 119.96592 * 269.71991 * 4 3 2 6 6 C 1.38207 * 120.07158 * 179.76811 * 5 4 3 7 7 C 1.38418 * 119.99948 * 0.51357 * 6 5 4 8 8 F 1.35100 * 120.03616 * 179.72574 * 7 6 5 9 9 C 1.38647 * 119.92746 * 359.73914 * 7 6 5 10 10 F 1.35103 * 120.03480 * 179.97438 * 9 7 6 11 11 C 1.38214 * 119.96641 * 89.99892 * 4 3 2 12 12 C 1.46899 * 110.99892 * 236.04418 * 2 1 3 13 13 C 1.52999 * 109.46938 * 199.48199 * 12 2 1 14 14 H 1.09002 * 109.47561 * 305.24181 * 13 12 2 15 15 C 1.47199 * 109.47013 * 65.24301 * 13 12 2 16 16 N 3.66849 * 124.21694 * 157.42262 * 2 1 3 17 17 C 1.53001 * 109.47186 * 185.24357 * 13 12 2 18 18 C 1.50694 * 109.47314 * 175.00086 * 17 13 12 19 19 H 1.08001 * 119.99931 * 359.97438 * 18 17 13 20 20 C 1.37874 * 120.00232 * 179.72787 * 18 17 13 21 21 N 1.31515 * 119.99840 * 0.27312 * 20 18 17 22 22 Si 1.86799 * 120.00147 * 180.27702 * 20 18 17 23 23 H 1.48496 * 109.47510 * 59.99659 * 22 20 18 24 24 H 1.48500 * 109.47136 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47183 * 299.99675 * 22 20 18 26 26 H 1.09004 * 109.46877 * 187.23004 * 1 2 3 27 27 H 1.08997 * 109.47622 * 307.22876 * 1 2 3 28 28 H 1.09000 * 109.47270 * 67.23813 * 1 2 3 29 29 H 1.08993 * 109.46853 * 186.04514 * 3 2 1 30 30 H 1.09005 * 109.46999 * 306.04294 * 3 2 1 31 31 H 1.08002 * 119.96196 * 0.02562 * 5 4 3 32 32 H 1.07999 * 120.00215 * 180.26119 * 6 5 4 33 33 H 1.08000 * 119.99386 * 359.95648 * 11 4 3 34 34 H 1.09005 * 109.47159 * 79.48707 * 12 2 1 35 35 H 1.08992 * 109.47487 * 319.48366 * 12 2 1 36 36 H 1.08998 * 109.47087 * 55.00149 * 17 13 12 37 37 H 1.08997 * 109.47288 * 295.00448 * 17 13 12 38 38 H 0.97005 * 119.99674 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 1.2984 5 6 0.4533 2.7538 1.4054 6 6 0.1200 3.3703 2.5966 7 6 0.9765 3.2895 3.6810 8 9 0.6540 3.8965 4.8441 9 6 2.1658 2.5852 3.5721 10 9 3.0036 2.5054 4.6290 11 6 2.4941 1.9645 2.3794 12 6 1.9954 -0.7660 -1.1376 13 6 3.4478 -1.1588 -0.8595 14 1 4.0277 -0.2656 -0.6271 15 6 3.4952 -2.0857 0.2830 16 7 3.5319 -2.8010 1.1647 17 6 4.0369 -1.8420 -2.0953 18 6 5.5005 -2.1183 -1.8667 19 1 5.9643 -1.8347 -0.9336 20 6 6.2464 -2.7379 -2.8469 21 7 5.6818 -3.0828 -3.9835 22 14 8.0589 -3.0874 -2.5605 23 1 8.2115 -3.9743 -1.3793 24 1 8.6293 -3.7558 -3.7577 25 1 8.7768 -1.8106 -2.3168 26 1 -0.3633 -1.0195 0.1293 27 1 -0.3634 0.6217 0.8182 28 1 -0.3634 0.3976 -0.9476 29 1 3.0796 1.3444 -0.1082 30 1 1.5610 1.9273 -0.8310 31 1 -0.2134 2.8207 0.5583 32 1 -0.8067 3.9185 2.6802 33 1 3.4201 1.4153 2.2934 34 1 1.9506 -0.1549 -2.0391 35 1 1.3963 -1.6656 -1.2783 36 1 3.9212 -1.1897 -2.9609 37 1 3.5136 -2.7810 -2.2755 38 1 6.2065 -3.5191 -4.6730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078886212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:21 Heat of formation + Delta-G solvation = -43.900788 kcal Electronic energy + Delta-G solvation = -22610.713812 eV Core-core repulsion = 18895.996171 eV Total energy + Delta-G solvation = -3714.717641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.61867 -48.69273 -39.71488 -37.76378 -35.68121 -33.66044 -32.10571 -31.38782 -30.76297 -27.54488 -26.89828 -24.54770 -23.42781 -22.40800 -21.77295 -21.07072 -18.12029 -17.36524 -17.28264 -16.80602 -16.48083 -16.44563 -15.42419 -15.10996 -14.97130 -14.90544 -14.67701 -14.51171 -14.23859 -13.82813 -13.40053 -13.08836 -12.80310 -12.51691 -12.29909 -12.14920 -11.97171 -11.82877 -11.66408 -11.48120 -11.36018 -11.21165 -11.06152 -10.70728 -10.56557 -10.22956 -9.58037 -9.28883 -9.27317 -8.89244 -8.47938 -8.32036 -6.12240 -4.15544 0.65243 0.77788 3.05786 3.29692 3.34194 3.38071 3.57425 3.71025 3.81923 4.01977 4.13318 4.28444 4.39058 4.43809 4.74031 4.85515 4.89034 5.10735 5.18316 5.26098 5.34088 5.41481 5.51617 5.62003 5.62619 5.66849 5.74855 5.78813 5.87343 5.93351 6.14764 6.29163 6.44002 6.51561 7.00182 7.02029 7.38269 7.49094 7.82782 8.20138 8.57105 8.89028 9.50265 10.98574 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.003376 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.428854 B = 8291.954826 C = 8976.118641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.085 3.915 4 C -0.051 4.051 5 C -0.097 4.097 6 C -0.127 4.127 7 C 0.061 3.939 8 F -0.132 7.132 9 C 0.068 3.932 10 F -0.129 7.129 11 C -0.103 4.103 12 C 0.062 3.938 13 C 0.011 3.989 14 H 0.099 0.901 15 C 0.255 3.745 16 N -0.479 5.479 17 C 0.031 3.969 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.063 3.937 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 14.897 7.077 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.042 4.042 4 C -0.052 4.052 5 C -0.115 4.115 6 C -0.146 4.146 7 C 0.040 3.960 8 F -0.111 7.111 9 C 0.048 3.952 10 F -0.108 7.108 11 C -0.122 4.122 12 C -0.066 4.066 13 C -0.011 4.011 14 H 0.117 0.883 15 C -0.062 4.062 16 N -0.156 5.156 17 C -0.007 4.007 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.728 13.511 8.740 20.517 hybrid contribution 0.864 0.459 -0.497 1.098 sum -11.864 13.970 8.244 20.097 Atomic orbital electron populations 1.22484 0.87399 1.02699 1.00269 1.62015 1.07892 1.12067 1.44524 1.21185 1.02090 0.88564 0.92332 1.19734 0.93588 0.96181 0.95683 1.21027 0.96477 0.96678 0.97344 1.21016 0.99970 1.01876 0.91763 1.17710 0.95068 0.99429 0.83766 1.91518 1.92570 1.81053 1.45956 1.17714 0.89149 1.02271 0.86061 1.91539 1.69809 1.94744 1.54679 1.21071 1.01933 0.98849 0.90352 1.22285 0.95396 0.98034 0.90927 1.19233 0.95368 0.95295 0.91167 0.88327 1.28845 0.91294 0.93069 0.92989 1.80996 1.10317 1.11383 1.12859 1.19169 0.95800 0.96155 0.89593 1.21095 0.94188 1.39707 1.01544 0.92544 1.24942 0.98568 0.95299 0.95073 1.69926 1.36465 1.40803 1.05852 0.86662 0.85080 0.78717 0.77683 1.20202 1.21192 1.20031 0.91262 0.91332 0.95339 0.88542 0.92810 0.84373 0.83825 0.83304 0.92280 0.90007 0.94454 0.95577 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.24 60.07 0.56 0.74 16 2 N -0.54 -6.36 4.39 -244.37 -1.07 -7.43 16 3 C 0.09 0.84 4.95 -4.98 -0.02 0.81 16 4 C -0.05 -0.49 4.89 -104.62 -0.51 -1.00 16 5 C -0.10 -0.76 7.88 -39.58 -0.31 -1.07 16 6 C -0.13 -1.05 10.02 -39.53 -0.40 -1.45 16 7 C 0.06 0.66 7.31 -39.36 -0.29 0.37 16 8 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 9 C 0.07 0.82 7.31 -39.37 -0.29 0.53 16 10 F -0.13 -1.74 17.18 2.25 0.04 -1.70 16 11 C -0.10 -1.14 9.68 -39.53 -0.38 -1.53 16 12 C 0.06 0.82 4.36 -3.82 -0.02 0.81 16 13 C 0.01 0.20 2.26 -93.41 -0.21 -0.01 16 14 H 0.10 1.57 6.64 -51.93 -0.34 1.22 16 15 C 0.25 5.15 13.67 -20.76 -0.28 4.87 16 16 N -0.48 -10.68 18.54 42.15 0.78 -9.90 16 17 C 0.03 0.70 4.42 -27.89 -0.12 0.57 16 18 C -0.53 -13.67 8.60 -34.44 -0.30 -13.96 16 19 H 0.06 1.46 7.59 -52.49 -0.40 1.06 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.04 13.29 55.43 0.74 -24.31 16 22 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.07 0.60 5.68 -51.93 -0.29 0.30 16 28 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.98 6.49 -51.93 -0.34 0.64 16 30 H 0.05 0.44 8.06 -51.93 -0.42 0.02 16 31 H 0.14 0.76 7.94 -52.49 -0.42 0.34 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.06 0.70 8.00 -51.93 -0.42 0.28 16 35 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -30.46 336.81 -6.81 -37.26 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -4.71 Total: -4.74 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.68 Total: -8.71 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.44 Total: -41.63 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.08 Total: -3.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.46 -6.81 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078886212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.637 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds