Wall clock time and date at job start Tue Mar 31 2020 07:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99727 * 2 1 4 4 C 1.50697 * 109.47024 * 66.04608 * 3 2 1 5 5 C 1.38264 * 119.96592 * 269.71991 * 4 3 2 6 6 C 1.38207 * 120.07158 * 179.76811 * 5 4 3 7 7 C 1.38418 * 119.99948 * 0.51357 * 6 5 4 8 8 F 1.35100 * 120.03616 * 179.72574 * 7 6 5 9 9 C 1.38647 * 119.92746 * 359.73914 * 7 6 5 10 10 F 1.35103 * 120.03480 * 179.97438 * 9 7 6 11 11 C 1.38214 * 119.96641 * 89.99892 * 4 3 2 12 12 C 1.46899 * 110.99892 * 236.04418 * 2 1 3 13 13 C 1.52999 * 109.46938 * 199.48199 * 12 2 1 14 14 H 1.09002 * 109.47561 * 305.24181 * 13 12 2 15 15 C 1.47199 * 109.47013 * 65.24301 * 13 12 2 16 16 N 3.66849 * 124.21694 * 157.42262 * 2 1 3 17 17 C 1.53001 * 109.47186 * 185.24357 * 13 12 2 18 18 C 1.50694 * 109.47314 * 175.00086 * 17 13 12 19 19 H 1.08001 * 119.99931 * 359.97438 * 18 17 13 20 20 C 1.37874 * 120.00232 * 179.72787 * 18 17 13 21 21 N 1.31515 * 119.99840 * 0.27312 * 20 18 17 22 22 Si 1.86799 * 120.00147 * 180.27702 * 20 18 17 23 23 H 1.48496 * 109.47510 * 59.99659 * 22 20 18 24 24 H 1.48500 * 109.47136 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47183 * 299.99675 * 22 20 18 26 26 H 1.09004 * 109.46877 * 187.23004 * 1 2 3 27 27 H 1.08997 * 109.47622 * 307.22876 * 1 2 3 28 28 H 1.09000 * 109.47270 * 67.23813 * 1 2 3 29 29 H 1.08993 * 109.46853 * 186.04514 * 3 2 1 30 30 H 1.09005 * 109.46999 * 306.04294 * 3 2 1 31 31 H 1.08002 * 119.96196 * 0.02562 * 5 4 3 32 32 H 1.07999 * 120.00215 * 180.26119 * 6 5 4 33 33 H 1.08000 * 119.99386 * 359.95648 * 11 4 3 34 34 H 1.09005 * 109.47159 * 79.48707 * 12 2 1 35 35 H 1.08992 * 109.47487 * 319.48366 * 12 2 1 36 36 H 1.08998 * 109.47087 * 55.00149 * 17 13 12 37 37 H 1.08997 * 109.47288 * 295.00448 * 17 13 12 38 38 H 0.97005 * 119.99674 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 1.2984 5 6 0.4533 2.7538 1.4054 6 6 0.1200 3.3703 2.5966 7 6 0.9765 3.2895 3.6810 8 9 0.6540 3.8965 4.8441 9 6 2.1658 2.5852 3.5721 10 9 3.0036 2.5054 4.6290 11 6 2.4941 1.9645 2.3794 12 6 1.9954 -0.7660 -1.1376 13 6 3.4478 -1.1588 -0.8595 14 1 4.0277 -0.2656 -0.6271 15 6 3.4952 -2.0857 0.2830 16 7 3.5319 -2.8010 1.1647 17 6 4.0369 -1.8420 -2.0953 18 6 5.5005 -2.1183 -1.8667 19 1 5.9643 -1.8347 -0.9336 20 6 6.2464 -2.7379 -2.8469 21 7 5.6818 -3.0828 -3.9835 22 14 8.0589 -3.0874 -2.5605 23 1 8.2115 -3.9743 -1.3793 24 1 8.6293 -3.7558 -3.7577 25 1 8.7768 -1.8106 -2.3168 26 1 -0.3633 -1.0195 0.1293 27 1 -0.3634 0.6217 0.8182 28 1 -0.3634 0.3976 -0.9476 29 1 3.0796 1.3444 -0.1082 30 1 1.5610 1.9273 -0.8310 31 1 -0.2134 2.8207 0.5583 32 1 -0.8067 3.9185 2.6802 33 1 3.4201 1.4153 2.2934 34 1 1.9506 -0.1549 -2.0391 35 1 1.3963 -1.6656 -1.2783 36 1 3.9212 -1.1897 -2.9609 37 1 3.5136 -2.7810 -2.2755 38 1 6.2065 -3.5191 -4.6730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078886212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:20 Heat of formation + Delta-G solvation = -60.741082 kcal Electronic energy + Delta-G solvation = -22611.444062 eV Core-core repulsion = 18895.996171 eV Total energy + Delta-G solvation = -3715.447891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.51053 -49.59795 -40.49707 -38.88525 -37.06423 -35.45638 -33.62492 -32.29138 -31.62269 -28.92457 -27.81701 -25.88229 -24.22040 -23.59711 -23.24913 -21.92719 -18.95709 -18.51176 -18.32847 -18.16214 -17.84847 -17.35817 -16.71639 -16.25656 -16.03208 -15.86880 -15.76816 -15.53740 -15.03014 -14.91947 -14.47231 -14.42408 -14.21486 -13.83329 -13.72556 -13.28141 -13.02754 -12.95385 -12.90485 -12.65462 -12.61093 -12.52221 -12.38659 -12.28906 -12.08056 -11.74032 -11.33904 -11.09149 -10.52630 -10.03908 -9.68998 -9.14227 -8.17749 -6.25131 -0.12236 0.04495 1.41656 1.43847 1.50228 2.11108 2.18467 2.31288 2.43064 2.80532 3.14546 3.18498 3.31893 3.41219 3.55517 3.72273 4.06372 4.15578 4.19693 4.36479 4.39780 4.56561 4.73570 4.80118 4.82399 4.85871 4.86564 4.95618 5.02144 5.03957 5.07579 5.17453 5.42221 5.50398 5.66189 5.76623 5.82023 6.08389 6.21060 6.25748 6.86365 6.97957 7.43343 8.92769 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.003376 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.428854 B = 8291.954826 C = 8976.118641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.560 5.560 3 C 0.085 3.915 4 C -0.052 4.052 5 C -0.081 4.081 6 C -0.115 4.115 7 C 0.045 3.955 8 F -0.143 7.143 9 C 0.040 3.960 10 F -0.148 7.148 11 C -0.116 4.116 12 C 0.074 3.926 13 C 0.020 3.980 14 H 0.117 0.883 15 C 0.267 3.733 16 N -0.521 5.521 17 C 0.038 3.962 18 C -0.539 4.539 19 H 0.052 0.948 20 C 0.014 3.986 21 N -0.922 5.922 22 Si 0.943 3.057 23 H -0.284 1.284 24 H -0.282 1.282 25 H -0.263 1.263 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.138 0.862 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.000 1.000 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 16.559 6.165 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.284 5.284 3 C -0.042 4.042 4 C -0.053 4.053 5 C -0.099 4.099 6 C -0.133 4.133 7 C 0.025 3.975 8 F -0.121 7.121 9 C 0.020 3.980 10 F -0.127 7.127 11 C -0.135 4.135 12 C -0.055 4.055 13 C -0.002 4.002 14 H 0.135 0.865 15 C -0.049 4.049 16 N -0.198 5.198 17 C -0.001 4.001 18 C -0.577 4.577 19 H 0.070 0.930 20 C -0.185 4.185 21 N -0.562 5.562 22 Si 0.769 3.231 23 H -0.210 1.210 24 H -0.208 1.208 25 H -0.187 1.187 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.192 0.808 32 H 0.192 0.808 33 H 0.156 0.844 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.019 0.981 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.205 15.189 7.837 22.224 hybrid contribution 1.287 -0.045 -0.216 1.306 sum -12.918 15.144 7.622 21.315 Atomic orbital electron populations 1.22509 0.85759 1.02567 1.01875 1.61878 1.09450 1.13231 1.43883 1.21241 1.01916 0.87851 0.93182 1.19822 0.94020 0.96417 0.95011 1.21394 0.95766 0.94676 0.98071 1.21380 1.00215 1.01035 0.90695 1.18015 0.95347 0.99789 0.84335 1.91488 1.92607 1.81279 1.46753 1.18012 0.89894 1.03961 0.86096 1.91480 1.70531 1.95067 1.55574 1.21093 1.02261 0.99293 0.90847 1.22077 0.92282 0.98694 0.92439 1.19247 0.98529 0.94555 0.87827 0.86541 1.29448 0.89967 0.92572 0.92916 1.80995 1.11925 1.12590 1.14316 1.18990 0.93816 0.95442 0.91817 1.21538 0.96231 1.38885 1.01041 0.92982 1.25650 1.02161 0.95576 0.95123 1.70012 1.37720 1.41903 1.06571 0.85831 0.81227 0.78806 0.77210 1.20953 1.20765 1.18747 0.92345 0.90245 0.93102 0.89286 0.89976 0.80805 0.80776 0.84391 0.89992 0.90501 0.94244 0.98115 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.24 127.69 1.18 1.50 16 2 N -0.56 -11.60 4.39 -927.07 -4.07 -15.68 16 3 C 0.08 1.39 4.95 85.56 0.42 1.81 16 4 C -0.05 -0.87 4.89 -19.86 -0.10 -0.96 16 5 C -0.08 -0.93 7.88 22.27 0.18 -0.76 16 6 C -0.11 -1.52 10.02 22.31 0.22 -1.30 16 7 C 0.05 0.94 7.31 22.41 0.16 1.10 16 8 F -0.14 -3.31 17.18 44.97 0.77 -2.54 16 9 C 0.04 0.97 7.31 22.41 0.16 1.14 16 10 F -0.15 -4.20 17.18 44.97 0.77 -3.43 16 11 C -0.12 -2.53 9.68 22.30 0.22 -2.31 16 12 C 0.07 1.79 4.36 86.30 0.38 2.16 16 13 C 0.02 0.68 2.26 -12.60 -0.03 0.65 16 14 H 0.12 3.51 6.64 -2.39 -0.02 3.49 16 15 C 0.27 10.72 13.67 89.44 1.22 11.95 16 16 N -0.52 -23.40 18.54 20.00 0.37 -23.03 16 17 C 0.04 1.67 4.42 29.85 0.13 1.80 16 18 C -0.54 -27.83 8.60 25.60 0.22 -27.61 16 19 H 0.05 2.68 7.59 -2.91 -0.02 2.65 16 20 C 0.01 0.75 5.46 84.65 0.46 1.21 16 21 N -0.92 -51.88 13.29 21.45 0.28 -51.60 16 22 Si 0.94 42.91 29.54 68.60 2.03 44.94 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 26 H 0.06 1.05 8.13 -2.38 -0.02 1.03 16 27 H 0.08 1.06 5.68 -2.39 -0.01 1.05 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 1.59 6.49 -2.39 -0.02 1.57 16 30 H 0.08 0.92 8.06 -2.38 -0.02 0.90 16 31 H 0.17 0.83 7.94 -2.91 -0.02 0.80 16 32 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.08 1.64 8.00 -2.38 -0.02 1.62 16 35 H 0.08 1.95 7.93 -2.39 -0.02 1.94 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -66.83 336.81 6.07 -60.76 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: 1.08 Total: 0.18 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.83 Total: -9.61 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -3.41 Total: -90.30 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 1.55 Total: -5.97 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -66.83 6.07 -60.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078886212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.020 kcal (2) G-P(sol) polarization free energy of solvation -66.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds