Wall clock time and date at job start Tue Mar 31 2020 07:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47126 * 2 1 4 4 C 1.42897 * 114.00272 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47477 * 180.02562 * 4 3 2 6 6 O 1.45203 * 109.47097 * 64.99763 * 5 4 3 7 7 C 1.34225 * 117.00065 * 179.97438 * 6 5 4 8 8 O 1.20830 * 120.00117 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00089 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08992 * 109.47157 * 59.99641 * 1 2 3 26 26 H 1.08994 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46724 * 300.00023 * 1 2 3 28 28 H 1.08995 * 109.47206 * 240.00339 * 2 1 3 29 29 H 1.09002 * 109.47313 * 119.99839 * 2 1 3 30 30 H 1.08999 * 109.47010 * 59.99782 * 4 3 2 31 31 H 1.09007 * 109.47045 * 300.00360 * 4 3 2 32 32 H 1.09005 * 109.47055 * 305.00463 * 5 4 3 33 33 H 1.08992 * 109.47430 * 184.99976 * 5 4 3 34 34 H 1.08998 * 109.46621 * 60.00590 * 9 7 6 35 35 H 1.08996 * 109.47266 * 300.00254 * 9 7 6 36 36 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3917 3.5545 1.2414 7 6 3.6636 4.8591 1.4017 8 8 4.2443 5.4664 0.5333 9 6 3.2445 5.5666 2.6647 10 6 3.6647 7.0120 2.5938 11 6 2.8071 7.9544 2.0559 12 6 3.1890 9.2799 1.9900 13 6 4.4359 9.6661 2.4641 14 8 4.8139 10.9684 2.4012 15 6 3.8911 11.8537 1.9741 16 1 2.9307 11.5059 1.6235 17 6 4.1751 13.2109 1.9850 18 7 5.3449 13.6347 2.4125 19 14 2.8963 14.4375 1.3940 20 1 1.6731 13.7110 0.9684 21 1 2.5588 15.3715 2.4980 22 1 3.4405 15.2052 0.2451 23 6 5.2974 8.7166 2.9978 24 6 4.9073 7.3935 3.0661 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8333 0.9768 -0.8908 31 1 3.8341 0.9764 0.8892 32 1 3.3491 3.4420 -0.8412 33 1 4.9081 3.0256 -0.0899 34 1 3.7205 5.0912 3.5223 35 1 2.1614 5.5082 2.7715 36 1 1.8374 7.6535 1.6878 37 1 2.5187 10.0153 1.5703 38 1 5.5437 14.5841 2.4198 39 1 6.2694 9.0131 3.3632 40 1 5.5750 6.6553 3.4852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111674343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:01 Heat of formation + Delta-G solvation = -141.323374 kcal Electronic energy + Delta-G solvation = -22289.228007 eV Core-core repulsion = 18649.080570 eV Total energy + Delta-G solvation = -3640.147437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38838 -38.97901 -38.35556 -36.84969 -36.02552 -32.55401 -32.27234 -31.44586 -30.15492 -29.71270 -26.84034 -25.18662 -23.18405 -23.14889 -21.97499 -21.49293 -20.12500 -17.98323 -17.67661 -17.34863 -16.97213 -16.50348 -16.12953 -16.01671 -14.74293 -14.63890 -14.51971 -14.32896 -13.95525 -13.55114 -13.51923 -13.36940 -12.84575 -12.75678 -12.69714 -12.46251 -11.99610 -11.87462 -11.67214 -11.53743 -11.42199 -11.27498 -10.88573 -10.76421 -10.66204 -10.60154 -10.40927 -10.24217 -9.96615 -9.31747 -8.82412 -8.15098 -7.18233 -6.44190 -4.02555 2.14464 2.25797 2.43192 2.87580 3.14453 3.15132 3.20819 3.26806 3.97920 4.51144 4.58040 4.66607 4.78286 4.84567 4.89471 4.98493 5.04913 5.08980 5.12173 5.24038 5.25978 5.32597 5.40564 5.51758 5.56864 5.67886 5.74919 5.77313 5.85210 6.22375 6.42040 6.48951 6.71480 6.81770 6.91922 7.06382 7.23954 7.36549 7.45410 7.83234 7.97066 8.01252 9.01547 9.71634 10.73857 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.002422 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.791382 B =11560.158756 C =12028.023062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.065 3.935 5 C 0.067 3.933 6 O -0.357 6.357 7 C 0.455 3.545 8 O -0.494 6.494 9 C -0.050 4.050 10 C -0.183 4.183 11 C -0.053 4.053 12 C -0.233 4.233 13 C 0.159 3.841 14 O -0.177 6.177 15 C -0.391 4.391 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.862 5.862 19 Si 0.942 3.058 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.192 4.192 24 C -0.057 4.057 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.269 0.731 39 H 0.118 0.882 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.439 -24.682 -2.250 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.302 6.302 4 C -0.012 4.012 5 C -0.007 4.007 6 O -0.274 6.274 7 C 0.297 3.703 8 O -0.379 6.379 9 C -0.087 4.087 10 C -0.184 4.184 11 C -0.071 4.071 12 C -0.252 4.252 13 C 0.105 3.895 14 O -0.080 6.080 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.767 3.233 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.211 4.211 24 C -0.075 4.075 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.136 0.864 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.044 -24.002 -2.467 24.874 hybrid contribution -0.367 0.348 -0.571 0.762 sum -6.411 -23.654 -3.038 24.695 Atomic orbital electron populations 1.21744 0.93618 1.02197 1.03387 1.22475 0.95831 0.83712 0.99987 1.87985 1.20396 1.26417 1.95413 1.22553 0.82383 0.94941 1.01301 1.22999 1.00000 0.91784 0.85899 1.86559 1.74601 1.25887 1.40403 1.24223 0.76384 0.79808 0.89890 1.90703 1.37605 1.66408 1.43208 1.20086 1.03307 0.92717 0.92609 1.18651 0.97058 0.92081 1.10565 1.20543 0.97837 0.92575 0.96179 1.21114 0.98498 0.96392 1.09215 1.19409 0.92136 0.85992 0.91975 1.83976 1.38901 1.11534 1.73557 1.21394 0.96298 0.86067 1.42947 0.88954 1.25307 0.97617 0.96782 0.96892 1.70049 1.20851 1.15624 1.43165 0.85632 0.79479 0.79769 0.78460 1.19078 1.20132 1.20151 1.20155 1.00705 0.91975 1.08304 1.20422 0.94518 0.94750 0.97821 0.91826 0.91128 0.91631 0.93492 0.93288 0.91177 0.92075 0.90435 0.89706 0.87824 0.87783 0.87603 0.85451 0.92063 0.86415 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.40 6.66 37.16 0.25 0.65 16 3 O -0.38 -3.94 10.31 -38.80 -0.40 -4.34 16 4 C 0.06 0.54 6.33 37.16 0.24 0.77 16 5 C 0.07 0.72 5.85 37.16 0.22 0.94 16 6 O -0.36 -4.67 10.19 -42.01 -0.43 -5.10 16 7 C 0.45 6.82 7.95 36.01 0.29 7.11 16 8 O -0.49 -9.22 15.78 -18.75 -0.30 -9.51 16 9 C -0.05 -0.67 5.94 -29.04 -0.17 -0.84 16 10 C -0.18 -3.22 4.38 -104.58 -0.46 -3.68 16 11 C -0.05 -1.02 9.69 -39.61 -0.38 -1.40 16 12 C -0.23 -5.24 9.17 -39.39 -0.36 -5.60 16 13 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 14 O -0.18 -5.14 9.76 0.05 0.00 -5.14 16 15 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16 16 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 19 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 C -0.19 -4.19 9.99 -39.39 -0.39 -4.59 16 24 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.90 8.13 -51.93 -0.42 0.47 16 33 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 35 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 36 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -34.11 350.90 -6.56 -40.67 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.62 Total: 1.94 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -0.85 Total: -14.79 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.76 Total: -24.78 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.12 Total: -24.09 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.11 -6.56 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111674343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.649 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds