Wall clock time and date at job start Tue Mar 31 2020 07:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47126 * 2 1 4 4 C 1.42897 * 114.00272 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47477 * 180.02562 * 4 3 2 6 6 O 1.45203 * 109.47097 * 64.99763 * 5 4 3 7 7 C 1.34225 * 117.00065 * 179.97438 * 6 5 4 8 8 O 1.20830 * 120.00117 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00089 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08992 * 109.47157 * 59.99641 * 1 2 3 26 26 H 1.08994 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46724 * 300.00023 * 1 2 3 28 28 H 1.08995 * 109.47206 * 240.00339 * 2 1 3 29 29 H 1.09002 * 109.47313 * 119.99839 * 2 1 3 30 30 H 1.08999 * 109.47010 * 59.99782 * 4 3 2 31 31 H 1.09007 * 109.47045 * 300.00360 * 4 3 2 32 32 H 1.09005 * 109.47055 * 305.00463 * 5 4 3 33 33 H 1.08992 * 109.47430 * 184.99976 * 5 4 3 34 34 H 1.08998 * 109.46621 * 60.00590 * 9 7 6 35 35 H 1.08996 * 109.47266 * 300.00254 * 9 7 6 36 36 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3917 3.5545 1.2414 7 6 3.6636 4.8591 1.4017 8 8 4.2443 5.4664 0.5333 9 6 3.2445 5.5666 2.6647 10 6 3.6647 7.0120 2.5938 11 6 2.8071 7.9544 2.0559 12 6 3.1890 9.2799 1.9900 13 6 4.4359 9.6661 2.4641 14 8 4.8139 10.9684 2.4012 15 6 3.8911 11.8537 1.9741 16 1 2.9307 11.5059 1.6235 17 6 4.1751 13.2109 1.9850 18 7 5.3449 13.6347 2.4125 19 14 2.8963 14.4375 1.3940 20 1 1.6731 13.7110 0.9684 21 1 2.5588 15.3715 2.4980 22 1 3.4405 15.2052 0.2451 23 6 5.2974 8.7166 2.9978 24 6 4.9073 7.3935 3.0661 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8333 0.9768 -0.8908 31 1 3.8341 0.9764 0.8892 32 1 3.3491 3.4420 -0.8412 33 1 4.9081 3.0256 -0.0899 34 1 3.7205 5.0912 3.5223 35 1 2.1614 5.5082 2.7715 36 1 1.8374 7.6535 1.6878 37 1 2.5187 10.0153 1.5703 38 1 5.5437 14.5841 2.4198 39 1 6.2694 9.0131 3.3632 40 1 5.5750 6.6553 3.4852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111674343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:01 Heat of formation + Delta-G solvation = -162.806127 kcal Electronic energy + Delta-G solvation = -22290.159569 eV Core-core repulsion = 18649.080570 eV Total energy + Delta-G solvation = -3641.078999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.56865 -40.68073 -39.09961 -38.41063 -37.28490 -34.42585 -33.22160 -32.66534 -31.80638 -30.48933 -28.37347 -27.09719 -24.08456 -23.66327 -23.65570 -22.77625 -21.52299 -19.86396 -18.87215 -18.75254 -18.08840 -17.48597 -17.05659 -16.86443 -16.38515 -16.29281 -15.92941 -15.54192 -15.28444 -15.17037 -14.67088 -14.51563 -14.30707 -13.99372 -13.74489 -13.61608 -13.26592 -12.99391 -12.85772 -12.69430 -12.51875 -12.31236 -12.29711 -12.22989 -12.10151 -12.06926 -11.63584 -11.45985 -11.19418 -10.80851 -10.56509 -9.78872 -8.95780 -8.48418 -6.16562 0.57894 0.59593 1.28080 1.34375 1.42110 1.53025 1.79787 2.17061 2.68311 2.82697 3.15878 3.49517 3.75441 3.88402 4.00528 4.03107 4.10399 4.17596 4.20586 4.28399 4.41756 4.44405 4.50265 4.53780 4.56708 4.68473 4.70205 4.78656 4.90427 5.05013 5.06452 5.13670 5.27138 5.29621 5.44835 5.54052 5.69763 5.73030 6.01827 6.19904 6.25253 6.83958 6.96158 7.76547 8.75030 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.002422 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.791382 B =11560.158756 C =12028.023062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.413 6.413 4 C 0.067 3.933 5 C 0.060 3.940 6 O -0.353 6.353 7 C 0.461 3.539 8 O -0.539 6.539 9 C -0.049 4.049 10 C -0.158 4.158 11 C -0.057 4.057 12 C -0.245 4.245 13 C 0.116 3.884 14 O -0.231 6.231 15 C -0.414 4.414 16 H 0.101 0.899 17 C -0.024 4.024 18 N -0.920 5.920 19 Si 1.021 2.979 20 H -0.252 1.252 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.206 4.206 24 C -0.052 4.052 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.273 0.727 39 H 0.115 0.885 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.163 -28.130 -2.163 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.334 6.334 4 C -0.009 4.009 5 C -0.014 4.014 6 O -0.270 6.270 7 C 0.306 3.694 8 O -0.428 6.428 9 C -0.085 4.085 10 C -0.159 4.159 11 C -0.075 4.075 12 C -0.264 4.264 13 C 0.065 3.935 14 O -0.138 6.138 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.558 5.558 19 Si 0.840 3.160 20 H -0.176 1.176 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.225 4.225 24 C -0.070 4.070 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.136 0.864 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.792 -27.541 -2.367 28.720 hybrid contribution 0.147 0.960 -0.577 1.130 sum -7.646 -26.581 -2.943 27.815 Atomic orbital electron populations 1.21781 0.93447 1.03302 1.02469 1.22668 0.96066 0.82604 1.01221 1.87938 1.21376 1.28370 1.95695 1.22640 0.81887 0.93188 1.03174 1.23272 1.00578 0.93094 0.84443 1.86546 1.74179 1.24791 1.41448 1.24358 0.75237 0.80251 0.89559 1.90713 1.39874 1.67402 1.44846 1.20219 1.05645 0.89413 0.93269 1.19196 0.95766 0.94463 1.06474 1.20954 0.99609 0.91287 0.95623 1.21225 0.97674 0.98044 1.09442 1.19976 0.94093 0.85365 0.94019 1.83939 1.40200 1.13295 1.76361 1.21868 0.96829 0.86839 1.43455 0.88168 1.26625 1.00083 0.98586 0.96874 1.70190 1.23470 1.16224 1.45942 0.84504 0.76688 0.76698 0.78138 1.17552 1.19091 1.19370 1.20452 1.00497 0.93188 1.08374 1.20908 0.95510 0.93860 0.96731 0.92653 0.89059 0.92600 0.92025 0.92203 0.88608 0.90776 0.91766 0.88763 0.83942 0.84678 0.84330 0.86358 0.91794 0.86663 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.58 6.66 71.98 0.48 1.06 16 3 O -0.41 -7.51 10.31 -145.57 -1.50 -9.01 16 4 C 0.07 0.91 6.33 71.98 0.46 1.37 16 5 C 0.06 1.14 5.85 71.98 0.42 1.57 16 6 O -0.35 -8.07 10.19 -48.72 -0.50 -8.57 16 7 C 0.46 12.25 7.95 71.24 0.57 12.82 16 8 O -0.54 -19.02 15.78 21.95 0.35 -18.67 16 9 C -0.05 -1.06 5.94 29.10 0.17 -0.88 16 10 C -0.16 -5.06 4.38 -19.84 -0.09 -5.14 16 11 C -0.06 -2.06 9.69 22.25 0.22 -1.85 16 12 C -0.24 -11.20 9.17 22.39 0.21 -11.00 16 13 C 0.12 6.02 6.65 22.58 0.15 6.17 16 14 O -0.23 -14.39 9.76 -22.72 -0.22 -14.61 16 15 C -0.41 -24.80 9.49 67.92 0.64 -24.16 16 16 H 0.10 5.55 5.20 -2.91 -0.02 5.53 16 17 C -0.02 -1.41 5.49 84.84 0.47 -0.95 16 18 N -0.92 -57.52 13.67 21.62 0.30 -57.23 16 19 Si 1.02 43.86 29.55 68.60 2.03 45.89 16 20 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 C -0.21 -9.12 9.99 22.39 0.22 -8.90 16 24 C -0.05 -1.81 9.69 22.25 0.22 -1.59 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.69 8.14 -2.38 -0.02 0.68 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 33 H 0.09 1.61 8.13 -2.39 -0.02 1.59 16 34 H 0.14 2.14 8.08 -2.39 -0.02 2.12 16 35 H 0.14 2.25 8.08 -2.39 -0.02 2.23 16 36 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 37 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 39 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 40 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -80.20 350.90 6.35 -73.85 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 1.03 Total: 20.73 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 4.87 Total: -32.38 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.30 Total: -57.23 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -1.87 Total: -50.86 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -80.20 6.35 -73.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111674343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.961 kcal (2) G-P(sol) polarization free energy of solvation -80.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds