Wall clock time and date at job start Tue Mar 31 2020 07:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47136 * 2 1 4 4 C 1.42894 * 114.00276 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47501 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47306 * 179.97438 * 5 4 3 7 7 O 1.45193 * 109.47068 * 179.97438 * 6 5 4 8 8 C 1.34765 * 117.00108 * 180.02562 * 7 6 5 9 9 O 1.21514 * 119.99595 * 0.02562 * 8 7 6 10 10 C 1.47394 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.39734 * 120.20524 * 359.97438 * 10 8 7 12 12 C 1.37800 * 119.91551 * 180.02562 * 11 10 8 13 13 C 1.38597 * 120.32764 * 359.97438 * 12 11 10 14 14 C 1.38019 * 120.41522 * 0.02562 * 13 12 11 15 15 C 1.38827 * 120.07722 * 0.02562 * 14 13 12 16 16 O 1.35513 * 120.16168 * 180.02562 * 15 14 13 17 17 C 1.34810 * 117.00005 * 354.40002 * 16 15 14 18 18 H 1.07997 * 120.00078 * 5.06925 * 17 16 15 19 19 C 1.38703 * 119.99974 * 185.06721 * 17 16 15 20 20 N 1.31515 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99911 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47326 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46768 * 120.00251 * 21 19 17 24 24 H 1.48498 * 109.47231 * 239.99729 * 21 19 17 25 25 H 1.09002 * 109.47418 * 299.99925 * 1 2 3 26 26 H 1.08998 * 109.47322 * 60.00152 * 1 2 3 27 27 H 1.08998 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47418 * 240.00075 * 2 1 3 29 29 H 1.08998 * 109.47322 * 119.99848 * 2 1 3 30 30 H 1.09008 * 109.46982 * 59.99936 * 4 3 2 31 31 H 1.08997 * 109.47377 * 300.00469 * 4 3 2 32 32 H 1.09004 * 109.46607 * 60.00223 * 5 4 3 33 33 H 1.08992 * 109.46825 * 300.00399 * 5 4 3 34 34 H 1.09008 * 109.47011 * 60.00087 * 6 5 4 35 35 H 1.08997 * 109.47543 * 300.00500 * 6 5 4 36 36 H 1.07995 * 120.04182 * 359.97438 * 11 10 8 37 37 H 1.07996 * 119.83753 * 179.97438 * 12 11 10 38 38 H 1.08004 * 119.78289 * 179.74090 * 13 12 11 39 39 H 1.08006 * 119.95762 * 179.97438 * 14 13 12 40 40 H 0.96993 * 120.00448 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 6 5.3505 3.0593 0.0012 7 8 5.7249 4.4621 -0.0001 8 6 7.0428 4.7437 0.0002 9 8 7.8568 3.8415 0.0011 10 6 7.4968 6.1460 -0.0004 11 6 6.5645 7.1868 -0.0020 12 6 6.9955 8.4956 -0.0031 13 6 8.3507 8.7861 -0.0022 14 6 9.2834 7.7687 -0.0007 15 6 8.8680 6.4440 -0.0006 16 8 9.7823 5.4438 0.0014 17 6 11.0778 5.7985 -0.1139 18 1 11.3532 6.8427 -0.1201 19 6 12.0569 4.8223 -0.2247 20 7 11.7214 3.5507 -0.2177 21 14 13.8519 5.3138 -0.3853 22 1 13.9632 6.7945 -0.3676 23 1 14.6238 4.7462 0.7492 24 1 14.3957 4.7913 -1.6645 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8340 0.9765 -0.8892 31 1 3.8333 0.9767 0.8907 32 1 3.4222 3.4225 0.8895 33 1 3.4229 3.4214 -0.8905 34 1 5.7541 2.5751 -0.8882 35 1 5.7526 2.5763 0.8917 36 1 5.5074 6.9657 -0.0031 37 1 6.2739 9.2990 -0.0047 38 1 8.6789 9.8151 -0.0074 39 1 10.3376 8.0035 -0.0004 40 1 12.4060 2.8680 -0.2955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118153171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:55 Heat of formation + Delta-G solvation = -141.108647 kcal Electronic energy + Delta-G solvation = -22676.659085 eV Core-core repulsion = 19036.520960 eV Total energy + Delta-G solvation = -3640.138126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.84353 -38.73326 -38.25100 -36.43709 -35.73131 -33.28250 -32.42583 -31.09254 -30.47516 -28.98398 -25.95412 -25.38984 -23.30375 -23.03051 -21.70308 -21.36844 -20.19666 -18.08630 -17.50714 -17.02104 -16.71316 -16.46009 -15.82482 -15.58139 -14.68239 -14.62114 -14.42453 -14.31180 -13.99437 -13.72321 -13.61184 -12.93755 -12.91871 -12.69032 -12.40799 -11.94066 -11.90419 -11.77691 -11.56117 -11.39782 -11.16069 -11.11955 -11.06909 -10.94923 -10.77897 -10.48545 -10.03933 -9.81286 -9.76346 -9.26384 -8.95227 -8.33748 -7.39473 -6.52807 -4.12529 1.59229 2.29528 2.97749 3.07784 3.08727 3.14559 3.45092 3.71405 3.87399 4.54003 4.75238 4.84205 4.84355 4.99863 5.02328 5.06869 5.12134 5.15210 5.26329 5.35771 5.46509 5.52146 5.56388 5.61829 5.62548 5.76744 5.82411 5.98230 6.01465 6.11744 6.15746 6.56166 6.63933 6.88085 6.97117 6.99785 7.10034 7.21769 7.29306 7.64537 7.85923 8.71161 8.87599 9.56825 10.61084 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.003117 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.809446 B = 8982.106925 C =10528.637344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.389 6.389 4 C 0.066 3.934 5 C -0.117 4.117 6 C 0.073 3.927 7 O -0.365 6.365 8 C 0.498 3.502 9 O -0.477 6.477 10 C -0.216 4.216 11 C -0.015 4.015 12 C -0.234 4.234 13 C -0.043 4.043 14 C -0.239 4.239 15 C 0.191 3.809 16 O -0.126 6.126 17 C -0.403 4.403 18 H 0.097 0.903 19 C 0.044 3.956 20 N -0.832 5.832 21 Si 0.943 3.057 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.749 -1.192 0.200 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.010 4.010 5 C -0.154 4.154 6 C -0.002 4.002 7 O -0.284 6.284 8 C 0.343 3.657 9 O -0.363 6.363 10 C -0.219 4.219 11 C -0.034 4.034 12 C -0.253 4.253 13 C -0.062 4.062 14 C -0.258 4.258 15 C 0.132 3.868 16 O -0.024 6.024 17 C -0.478 4.478 18 H 0.114 0.886 19 C -0.164 4.164 20 N -0.464 5.464 21 Si 0.767 3.233 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.199 1.199 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.497 -1.883 0.203 14.620 hybrid contribution 1.147 -0.109 -0.070 1.154 sum -13.350 -1.992 0.133 13.499 Atomic orbital electron populations 1.21744 0.93745 1.02185 1.03181 1.22464 0.95572 0.83784 1.00193 1.87856 1.21045 1.26477 1.95492 1.22301 0.81222 0.96754 1.00765 1.21364 0.93865 0.95364 1.04813 1.22618 0.94094 0.80764 1.02697 1.86480 1.27695 1.28252 1.86020 1.21097 0.79634 0.90385 0.74535 1.91001 1.53520 1.47458 1.44351 1.18023 0.90985 0.89486 1.23398 1.20973 0.98129 0.91719 0.92557 1.20550 0.95428 0.95761 1.13608 1.20974 0.93023 0.98045 0.94161 1.21111 1.00660 0.91720 1.12315 1.19236 0.88476 0.88373 0.90757 1.84145 1.15555 1.29436 1.73238 1.21585 0.79094 0.94515 1.52614 0.88570 1.25424 1.00321 0.94610 0.96023 1.70123 1.34437 0.99557 1.42247 0.85621 0.80152 0.79065 0.78432 1.18869 1.19955 1.19942 0.91823 0.91827 0.91145 0.93341 0.93344 0.92855 0.92855 0.90040 0.90025 0.91386 0.91396 0.85706 0.86945 0.86942 0.84809 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.39 -4.48 10.34 -35.23 -0.36 -4.84 16 4 C 0.07 0.72 5.94 37.16 0.22 0.94 16 5 C -0.12 -1.42 5.96 -26.73 -0.16 -1.58 16 6 C 0.07 1.13 5.48 37.16 0.20 1.33 16 7 O -0.37 -6.85 9.47 -40.67 -0.39 -7.24 16 8 C 0.50 11.46 7.89 34.46 0.27 11.73 16 9 O -0.48 -12.95 14.96 -26.59 -0.40 -13.35 16 10 C -0.22 -4.86 5.89 -104.83 -0.62 -5.48 16 11 C -0.02 -0.28 9.61 -39.18 -0.38 -0.66 16 12 C -0.23 -3.93 10.02 -39.61 -0.40 -4.33 16 13 C -0.04 -0.76 10.03 -39.53 -0.40 -1.16 16 14 C -0.24 -5.08 9.16 -39.44 -0.36 -5.44 16 15 C 0.19 4.74 6.66 -38.58 -0.26 4.48 16 16 O -0.13 -3.67 7.84 -21.03 -0.16 -3.83 16 17 C -0.40 -11.21 9.49 30.90 0.29 -10.92 16 18 H 0.10 2.42 5.21 -52.49 -0.27 2.15 16 19 C 0.04 1.21 5.49 -17.52 -0.10 1.12 16 20 N -0.83 -24.69 13.67 55.48 0.76 -23.93 16 21 Si 0.94 20.17 29.55 -169.99 -5.02 15.14 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.13 1.97 7.61 -52.49 -0.40 1.57 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 39 H 0.13 2.77 5.64 -52.48 -0.30 2.48 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -33.38 348.14 -6.97 -40.36 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.60 Total: 2.36 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.04 Total: -9.92 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.76 Total: -23.93 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -1.31 Total: -29.26 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.38 -6.97 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118153171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.752 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds