Wall clock time and date at job start Tue Mar 31 2020 07:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47136 * 2 1 4 4 C 1.42894 * 114.00276 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47501 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47306 * 179.97438 * 5 4 3 7 7 O 1.45193 * 109.47068 * 179.97438 * 6 5 4 8 8 C 1.34765 * 117.00108 * 180.02562 * 7 6 5 9 9 O 1.21514 * 119.99595 * 0.02562 * 8 7 6 10 10 C 1.47394 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.39734 * 120.20524 * 359.97438 * 10 8 7 12 12 C 1.37800 * 119.91551 * 180.02562 * 11 10 8 13 13 C 1.38597 * 120.32764 * 359.97438 * 12 11 10 14 14 C 1.38019 * 120.41522 * 0.02562 * 13 12 11 15 15 C 1.38827 * 120.07722 * 0.02562 * 14 13 12 16 16 O 1.35513 * 120.16168 * 180.02562 * 15 14 13 17 17 C 1.34810 * 117.00005 * 354.40002 * 16 15 14 18 18 H 1.07997 * 120.00078 * 5.06925 * 17 16 15 19 19 C 1.38703 * 119.99974 * 185.06721 * 17 16 15 20 20 N 1.31515 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99911 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47326 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46768 * 120.00251 * 21 19 17 24 24 H 1.48498 * 109.47231 * 239.99729 * 21 19 17 25 25 H 1.09002 * 109.47418 * 299.99925 * 1 2 3 26 26 H 1.08998 * 109.47322 * 60.00152 * 1 2 3 27 27 H 1.08998 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47418 * 240.00075 * 2 1 3 29 29 H 1.08998 * 109.47322 * 119.99848 * 2 1 3 30 30 H 1.09008 * 109.46982 * 59.99936 * 4 3 2 31 31 H 1.08997 * 109.47377 * 300.00469 * 4 3 2 32 32 H 1.09004 * 109.46607 * 60.00223 * 5 4 3 33 33 H 1.08992 * 109.46825 * 300.00399 * 5 4 3 34 34 H 1.09008 * 109.47011 * 60.00087 * 6 5 4 35 35 H 1.08997 * 109.47543 * 300.00500 * 6 5 4 36 36 H 1.07995 * 120.04182 * 359.97438 * 11 10 8 37 37 H 1.07996 * 119.83753 * 179.97438 * 12 11 10 38 38 H 1.08004 * 119.78289 * 179.74090 * 13 12 11 39 39 H 1.08006 * 119.95762 * 179.97438 * 14 13 12 40 40 H 0.96993 * 120.00448 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 6 5.3505 3.0593 0.0012 7 8 5.7249 4.4621 -0.0001 8 6 7.0428 4.7437 0.0002 9 8 7.8568 3.8415 0.0011 10 6 7.4968 6.1460 -0.0004 11 6 6.5645 7.1868 -0.0020 12 6 6.9955 8.4956 -0.0031 13 6 8.3507 8.7861 -0.0022 14 6 9.2834 7.7687 -0.0007 15 6 8.8680 6.4440 -0.0006 16 8 9.7823 5.4438 0.0014 17 6 11.0778 5.7985 -0.1139 18 1 11.3532 6.8427 -0.1201 19 6 12.0569 4.8223 -0.2247 20 7 11.7214 3.5507 -0.2177 21 14 13.8519 5.3138 -0.3853 22 1 13.9632 6.7945 -0.3676 23 1 14.6238 4.7462 0.7492 24 1 14.3957 4.7913 -1.6645 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8340 0.9765 -0.8892 31 1 3.8333 0.9767 0.8907 32 1 3.4222 3.4225 0.8895 33 1 3.4229 3.4214 -0.8905 34 1 5.7541 2.5751 -0.8882 35 1 5.7526 2.5763 0.8917 36 1 5.5074 6.9657 -0.0031 37 1 6.2739 9.2990 -0.0047 38 1 8.6789 9.8151 -0.0074 39 1 10.3376 8.0035 -0.0004 40 1 12.4060 2.8680 -0.2955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118153171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:55 Heat of formation + Delta-G solvation = -161.781466 kcal Electronic energy + Delta-G solvation = -22677.555526 eV Core-core repulsion = 19036.520960 eV Total energy + Delta-G solvation = -3641.034567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57154 -40.41801 -39.14459 -38.13956 -37.42766 -34.39110 -34.33655 -32.34449 -31.59150 -30.64121 -27.56032 -26.94854 -24.82582 -23.70530 -23.30221 -22.53743 -21.84370 -19.91690 -19.23239 -18.41761 -17.81787 -17.78018 -17.12499 -17.04798 -16.35561 -16.16244 -15.76393 -15.49425 -15.40101 -15.26707 -15.17269 -14.42372 -14.17100 -14.12301 -13.58111 -13.41878 -13.09590 -12.88792 -12.86140 -12.71207 -12.58115 -12.57019 -12.33076 -12.09451 -12.06763 -11.97779 -11.60479 -11.50962 -11.06915 -10.87387 -10.60647 -9.92879 -9.12351 -8.49138 -6.20124 -0.05274 0.68697 1.33397 1.43645 1.53258 1.58585 1.72596 2.13786 2.72517 2.81632 3.14395 3.36714 3.79076 3.88193 3.93123 4.08617 4.12178 4.14918 4.24079 4.27899 4.30686 4.43534 4.44665 4.49896 4.52102 4.62481 4.82959 4.91577 4.95538 5.02199 5.04105 5.06137 5.13097 5.26968 5.39909 5.47211 5.60171 5.66414 5.92954 6.12238 6.19414 6.89552 6.96813 7.71019 8.71362 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.003117 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.809446 B = 8982.106925 C =10528.637344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.407 6.407 4 C 0.068 3.932 5 C -0.102 4.102 6 C 0.067 3.933 7 O -0.352 6.352 8 C 0.499 3.501 9 O -0.530 6.530 10 C -0.238 4.238 11 C -0.012 4.012 12 C -0.204 4.204 13 C -0.027 4.027 14 C -0.256 4.256 15 C 0.157 3.843 16 O -0.188 6.188 17 C -0.427 4.427 18 H 0.112 0.888 19 C -0.021 4.021 20 N -0.904 5.904 21 Si 1.024 2.976 22 H -0.243 1.243 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.157 0.843 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.131 0.869 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.791 1.871 0.148 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.327 6.327 4 C -0.009 4.009 5 C -0.140 4.140 6 C -0.007 4.007 7 O -0.270 6.270 8 C 0.346 3.654 9 O -0.421 6.421 10 C -0.241 4.241 11 C -0.030 4.030 12 C -0.222 4.222 13 C -0.045 4.045 14 C -0.275 4.275 15 C 0.102 3.898 16 O -0.090 6.090 17 C -0.502 4.502 18 H 0.129 0.871 19 C -0.221 4.221 20 N -0.539 5.539 21 Si 0.842 3.158 22 H -0.166 1.166 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.174 0.826 37 H 0.183 0.817 38 H 0.179 0.821 39 H 0.149 0.851 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.621 1.245 0.155 16.668 hybrid contribution 1.333 -0.840 -0.040 1.576 sum -15.288 0.405 0.115 15.294 Atomic orbital electron populations 1.21766 0.92600 1.03456 1.02805 1.22710 0.96563 0.82639 1.00991 1.87819 1.20906 1.28325 1.95646 1.22249 0.81467 0.95676 1.01505 1.21251 0.90771 0.96705 1.05263 1.22897 0.96527 0.78931 1.02320 1.86450 1.25164 1.30286 1.85137 1.21418 0.80353 0.90473 0.73133 1.90987 1.55173 1.49051 1.46871 1.18481 0.91187 0.90447 1.23960 1.21403 0.98881 0.91469 0.91266 1.21230 0.96084 0.96203 1.08690 1.21542 0.92767 0.99281 0.90871 1.21295 1.01700 0.91226 1.13281 1.19982 0.89118 0.89546 0.91198 1.84147 1.16337 1.31482 1.77024 1.22139 0.79520 0.95488 1.53087 0.87063 1.26798 1.05607 0.94318 0.95338 1.70302 1.36139 1.01195 1.46304 0.84470 0.73113 0.79729 0.78445 1.16630 1.19398 1.19432 0.92173 0.92191 0.89085 0.92565 0.92545 0.92211 0.92164 0.89520 0.89552 0.91943 0.91852 0.82582 0.81651 0.82138 0.85094 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.41 -8.86 10.34 -148.98 -1.54 -10.40 16 4 C 0.07 1.41 5.94 71.98 0.43 1.84 16 5 C -0.10 -2.40 5.96 30.59 0.18 -2.22 16 6 C 0.07 2.12 5.48 71.98 0.39 2.51 16 7 O -0.35 -13.24 9.47 -56.76 -0.54 -13.77 16 8 C 0.50 23.80 7.89 70.23 0.55 24.36 16 9 O -0.53 -30.91 14.96 26.79 0.40 -30.51 16 10 C -0.24 -10.76 5.89 -20.00 -0.12 -10.88 16 11 C -0.01 -0.40 9.61 22.53 0.22 -0.19 16 12 C -0.20 -5.62 10.02 22.25 0.22 -5.40 16 13 C -0.03 -0.81 10.03 22.30 0.22 -0.59 16 14 C -0.26 -10.64 9.16 22.36 0.20 -10.43 16 15 C 0.16 8.02 6.66 22.92 0.15 8.17 16 16 O -0.19 -11.71 7.84 0.97 0.01 -11.70 16 17 C -0.43 -25.15 9.49 67.93 0.64 -24.50 16 18 H 0.11 5.82 5.21 -2.91 -0.02 5.81 16 19 C -0.02 -1.22 5.49 84.85 0.47 -0.75 16 20 N -0.90 -57.75 13.67 21.62 0.30 -57.45 16 21 Si 1.02 43.01 29.55 68.60 2.03 45.03 16 22 H -0.24 -9.17 7.11 99.48 0.71 -8.47 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.16 4.20 7.61 -2.91 -0.02 4.17 16 37 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 38 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.13 5.41 5.64 -2.91 -0.02 5.40 16 40 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -81.17 348.14 6.48 -74.69 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 1.04 Total: 22.10 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 4.79 Total: -17.99 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.30 Total: -57.45 kcal Atomic # 8 Polarization: -64.71 SS G_CDS: -1.67 Total: -66.38 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -81.17 6.48 -74.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118153171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.096 kcal (2) G-P(sol) polarization free energy of solvation -81.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds