Wall clock time and date at job start Tue Mar 31 2020 07:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.44466 * 1 3 3 C 1.44504 * 117.21356 * 2 1 4 4 C 1.51690 * 113.52851 * 70.23348 * 3 2 1 5 5 C 1.51649 * 113.92585 * 66.39017 * 4 3 2 6 6 N 1.45763 * 112.37048 * 291.48678 * 5 4 3 7 7 C 1.44337 * 116.87009 * 300.28908 * 6 5 4 8 8 C 1.53003 * 109.47634 * 213.49154 * 7 6 5 9 9 C 1.50694 * 109.47010 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00506 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99629 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99993 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47159 * 90.00261 * 13 11 9 15 15 H 1.48496 * 109.47442 * 210.00051 * 13 11 9 16 16 H 1.48503 * 109.47305 * 330.00377 * 13 11 9 17 17 C 1.39995 * 112.64691 * 79.46433 * 6 5 4 18 18 C 1.40349 * 115.48297 * 114.62658 * 17 6 5 19 19 C 1.38014 * 119.80373 * 179.12198 * 18 17 6 20 20 Cl 1.73614 * 120.11324 * 180.19711 * 19 18 17 21 21 C 1.38350 * 120.01471 * 0.14537 * 19 18 17 22 22 C 1.37963 * 120.20453 * 0.61060 * 21 19 18 23 23 C 1.37710 * 124.26637 * 295.93114 * 17 6 5 24 24 H 1.08995 * 109.47134 * 66.84998 * 1 2 3 25 25 H 1.09003 * 109.47353 * 186.84985 * 1 2 3 26 26 H 1.09001 * 109.47601 * 306.85043 * 1 2 3 27 27 H 1.09802 * 109.67348 * 309.01928 * 3 2 1 28 28 H 1.09738 * 109.80479 * 191.68322 * 3 2 1 29 29 H 1.08547 * 109.77276 * 302.26646 * 4 3 2 30 30 H 1.09838 * 107.74673 * 185.87397 * 4 3 2 31 31 H 1.09409 * 108.82118 * 170.19959 * 5 4 3 32 32 H 1.09422 * 108.79245 * 52.75056 * 5 4 3 33 33 H 1.09000 * 109.47342 * 333.49715 * 7 6 5 34 34 H 1.09007 * 109.46733 * 93.49166 * 7 6 5 35 35 H 1.09006 * 109.46901 * 300.00334 * 8 7 6 36 36 H 1.08998 * 109.47018 * 59.99997 * 8 7 6 37 37 H 0.96999 * 119.99878 * 180.02562 * 12 11 9 38 38 H 1.07799 * 119.25736 * 359.10577 * 18 17 6 39 39 H 1.08073 * 119.72718 * 180.58498 * 21 19 18 40 40 H 1.08043 * 120.32076 * 179.77673 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4447 0.0000 0.0000 3 6 2.1055 1.2851 0.0000 4 6 1.9641 2.0387 1.3088 5 6 2.6704 1.3792 2.4776 6 7 2.0408 0.1244 2.8698 7 6 0.6596 0.1890 3.2839 8 6 0.4034 -0.8571 4.3705 9 6 -1.0389 -0.7900 4.8023 10 1 -1.7059 -0.0727 4.3475 11 6 -1.5068 -1.6445 5.7780 12 7 -0.6944 -2.5177 6.3322 13 14 -3.2944 -1.5609 6.3137 14 1 -4.1066 -2.4763 5.4724 15 1 -3.4041 -1.9690 7.7373 16 1 -3.7936 -0.1711 6.1573 17 6 2.3977 -0.9416 2.0355 18 6 3.1443 -1.9617 2.6450 19 6 3.5282 -3.0643 1.9090 20 17 4.4476 -4.3334 2.6562 21 6 3.1797 -3.1604 0.5735 22 6 2.4591 -2.1506 -0.0301 23 6 2.0849 -1.0165 0.6965 24 1 -0.3633 0.4040 -0.9449 25 1 -0.3634 -1.0203 0.1226 26 1 -0.3634 0.6163 0.8223 27 1 1.6957 1.9115 -0.8033 28 1 3.1747 1.1534 -0.2091 29 1 0.9129 2.1819 1.5384 30 1 2.4046 3.0354 1.1706 31 1 2.6661 2.0686 3.3272 32 1 3.7119 1.1915 2.1997 33 1 0.4444 1.1823 3.6778 34 1 0.0142 -0.0102 2.4283 35 1 0.6185 -1.8505 3.9765 36 1 1.0488 -0.6580 5.2260 37 1 -1.0237 -3.1191 7.0183 38 1 3.4099 -1.8703 3.6858 39 1 3.4746 -4.0302 0.0040 40 1 2.1890 -2.2221 -1.0738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128604608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:28 Heat of formation + Delta-G solvation = 32.460449 kcal Electronic energy + Delta-G solvation = -22230.437962 eV Core-core repulsion = 19070.828272 eV Total energy + Delta-G solvation = -3159.609689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51470 -37.37344 -36.16289 -35.86647 -33.25794 -32.04082 -30.37620 -29.95773 -28.31556 -26.17016 -24.90871 -24.31945 -22.40679 -21.55324 -20.16165 -19.59019 -17.18488 -16.63207 -16.06043 -15.93894 -15.20392 -14.96612 -14.62730 -14.43569 -13.81390 -13.58977 -13.49395 -13.31428 -12.82880 -12.64109 -12.26550 -12.08181 -11.96339 -11.65241 -11.46737 -11.35275 -10.95833 -10.92236 -10.88183 -10.77924 -10.58399 -10.55094 -9.89947 -9.57324 -9.13710 -8.53396 -8.43609 -8.31980 -7.94147 -7.56689 -5.98454 -4.01440 1.35712 1.53598 2.38750 3.31464 3.37888 3.40291 3.72150 3.79709 4.15645 4.48864 4.81327 5.01614 5.17678 5.20631 5.28598 5.37284 5.39527 5.51918 5.57181 5.63632 5.70260 5.77124 5.84500 5.91396 6.03980 6.12027 6.15643 6.24598 6.27678 6.47166 6.47388 6.74345 6.78714 6.96974 7.35218 7.58763 7.62597 7.80222 7.84557 8.03144 8.14530 8.44081 9.05751 9.62050 11.12627 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.006189 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.806271 B = 4522.996166 C = 5993.745835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.585 5.585 3 C 0.108 3.892 4 C -0.193 4.193 5 C 0.093 3.907 6 N -0.563 5.563 7 C 0.100 3.900 8 C 0.030 3.970 9 C -0.523 4.523 10 H 0.052 0.948 11 C 0.060 3.940 12 N -0.889 5.889 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.126 3.874 18 C -0.076 4.076 19 C -0.035 4.035 20 Cl -0.079 7.079 21 C -0.118 4.118 22 C -0.096 4.096 23 C 0.111 3.889 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.016 0.984 36 H 0.022 0.978 37 H 0.260 0.740 38 H 0.141 0.859 39 H 0.129 0.871 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.773 4.193 -13.814 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.305 5.305 3 C -0.018 4.018 4 C -0.234 4.234 5 C -0.034 4.034 6 N -0.284 5.284 7 C -0.024 4.024 8 C -0.008 4.008 9 C -0.562 4.562 10 H 0.070 0.930 11 C -0.141 4.141 12 N -0.528 5.528 13 Si 0.718 3.282 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C 0.030 3.970 18 C -0.096 4.096 19 C -0.062 4.062 20 Cl -0.050 7.050 21 C -0.137 4.137 22 C -0.116 4.116 23 C 0.015 3.985 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.009 3.853 -13.564 16.733 hybrid contribution -1.456 0.277 0.508 1.566 sum 7.553 4.130 -13.056 15.639 Atomic orbital electron populations 1.21544 0.82761 1.02442 1.00412 1.50731 1.05973 1.07994 1.65846 1.21006 0.98529 0.86394 0.95900 1.22502 1.02514 1.00627 0.97780 1.21397 0.96956 0.89192 0.95863 1.53909 1.21787 1.03772 1.48981 1.21680 0.81222 1.01240 0.98222 1.19117 0.95973 0.93143 0.92555 1.21133 0.95397 1.18730 1.20911 0.93004 1.24975 0.97444 0.95399 0.96322 1.69974 1.34863 1.21058 1.26922 0.86638 0.85452 0.78264 0.77890 1.20706 1.21175 1.19948 1.18808 0.96743 0.92315 0.89160 1.21595 0.96220 0.91321 1.00509 1.20748 1.00315 0.91487 0.93646 1.98351 1.72698 1.51250 1.82718 1.20807 1.00162 0.99712 0.93017 1.21264 0.97696 0.92892 0.99797 1.18261 0.98178 0.91791 0.90273 0.92137 0.91301 0.94548 0.91122 0.91512 0.91718 0.91484 0.90790 0.91680 0.92298 0.95352 0.96556 0.96010 0.93001 0.84167 0.85265 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 9.26 58.76 0.54 1.54 16 2 N -0.58 -8.02 3.45 -183.37 -0.63 -8.65 16 3 C 0.11 1.28 5.43 -5.77 -0.03 1.25 16 4 C -0.19 -2.37 5.29 -28.08 -0.15 -2.52 16 5 C 0.09 1.33 5.46 -5.12 -0.03 1.30 16 6 N -0.56 -10.09 3.43 -174.28 -0.60 -10.68 16 7 C 0.10 2.09 4.47 -5.19 -0.02 2.06 16 8 C 0.03 0.78 5.11 -27.88 -0.14 0.64 16 9 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 10 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 13 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.13 2.18 4.18 -83.53 -0.35 1.83 16 18 C -0.08 -1.33 9.48 -38.87 -0.37 -1.70 16 19 C -0.03 -0.54 6.31 -39.62 -0.25 -0.79 16 20 Cl -0.08 -1.16 28.95 -51.86 -1.50 -2.66 16 21 C -0.12 -1.62 9.80 -39.64 -0.39 -2.00 16 22 C -0.10 -1.33 9.87 -39.10 -0.39 -1.71 16 23 C 0.11 1.71 4.78 -84.29 -0.40 1.31 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 26 H 0.04 0.55 5.38 -51.93 -0.28 0.27 16 27 H 0.07 0.72 8.21 -51.47 -0.42 0.30 16 28 H 0.07 0.77 8.16 -51.51 -0.42 0.35 16 29 H 0.06 0.89 6.67 -52.18 -0.35 0.54 16 30 H 0.07 0.68 8.21 -51.45 -0.42 0.25 16 31 H 0.07 1.03 8.18 -51.70 -0.42 0.61 16 32 H 0.06 0.88 8.00 -51.69 -0.41 0.46 16 33 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 34 H 0.03 0.59 5.00 -51.93 -0.26 0.33 16 35 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.14 2.60 8.04 -52.60 -0.42 2.18 16 39 H 0.13 1.46 8.06 -52.45 -0.42 1.04 16 40 H 0.13 1.53 8.06 -52.46 -0.42 1.11 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -30.04 331.84 -10.27 -40.31 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.87 Total: -1.58 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.39 Total: -12.26 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.49 Total: -45.51 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.04 -10.27 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128604608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.768 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds