Wall clock time and date at job start Tue Mar 31 2020 07:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.44466 * 1 3 3 C 1.44504 * 117.21356 * 2 1 4 4 C 1.51690 * 113.52851 * 70.23348 * 3 2 1 5 5 C 1.51649 * 113.92585 * 66.39017 * 4 3 2 6 6 N 1.45763 * 112.37048 * 291.48678 * 5 4 3 7 7 C 1.44337 * 116.87009 * 300.28908 * 6 5 4 8 8 C 1.53003 * 109.47634 * 213.49154 * 7 6 5 9 9 C 1.50694 * 109.47010 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00506 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99629 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99993 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47159 * 90.00261 * 13 11 9 15 15 H 1.48496 * 109.47442 * 210.00051 * 13 11 9 16 16 H 1.48503 * 109.47305 * 330.00377 * 13 11 9 17 17 C 1.39995 * 112.64691 * 79.46433 * 6 5 4 18 18 C 1.40349 * 115.48297 * 114.62658 * 17 6 5 19 19 C 1.38014 * 119.80373 * 179.12198 * 18 17 6 20 20 Cl 1.73614 * 120.11324 * 180.19711 * 19 18 17 21 21 C 1.38350 * 120.01471 * 0.14537 * 19 18 17 22 22 C 1.37963 * 120.20453 * 0.61060 * 21 19 18 23 23 C 1.37710 * 124.26637 * 295.93114 * 17 6 5 24 24 H 1.08995 * 109.47134 * 66.84998 * 1 2 3 25 25 H 1.09003 * 109.47353 * 186.84985 * 1 2 3 26 26 H 1.09001 * 109.47601 * 306.85043 * 1 2 3 27 27 H 1.09802 * 109.67348 * 309.01928 * 3 2 1 28 28 H 1.09738 * 109.80479 * 191.68322 * 3 2 1 29 29 H 1.08547 * 109.77276 * 302.26646 * 4 3 2 30 30 H 1.09838 * 107.74673 * 185.87397 * 4 3 2 31 31 H 1.09409 * 108.82118 * 170.19959 * 5 4 3 32 32 H 1.09422 * 108.79245 * 52.75056 * 5 4 3 33 33 H 1.09000 * 109.47342 * 333.49715 * 7 6 5 34 34 H 1.09007 * 109.46733 * 93.49166 * 7 6 5 35 35 H 1.09006 * 109.46901 * 300.00334 * 8 7 6 36 36 H 1.08998 * 109.47018 * 59.99997 * 8 7 6 37 37 H 0.96999 * 119.99878 * 180.02562 * 12 11 9 38 38 H 1.07799 * 119.25736 * 359.10577 * 18 17 6 39 39 H 1.08073 * 119.72718 * 180.58498 * 21 19 18 40 40 H 1.08043 * 120.32076 * 179.77673 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4447 0.0000 0.0000 3 6 2.1055 1.2851 0.0000 4 6 1.9641 2.0387 1.3088 5 6 2.6704 1.3792 2.4776 6 7 2.0408 0.1244 2.8698 7 6 0.6596 0.1890 3.2839 8 6 0.4034 -0.8571 4.3705 9 6 -1.0389 -0.7900 4.8023 10 1 -1.7059 -0.0727 4.3475 11 6 -1.5068 -1.6445 5.7780 12 7 -0.6944 -2.5177 6.3322 13 14 -3.2944 -1.5609 6.3137 14 1 -4.1066 -2.4763 5.4724 15 1 -3.4041 -1.9690 7.7373 16 1 -3.7936 -0.1711 6.1573 17 6 2.3977 -0.9416 2.0355 18 6 3.1443 -1.9617 2.6450 19 6 3.5282 -3.0643 1.9090 20 17 4.4476 -4.3334 2.6562 21 6 3.1797 -3.1604 0.5735 22 6 2.4591 -2.1506 -0.0301 23 6 2.0849 -1.0165 0.6965 24 1 -0.3633 0.4040 -0.9449 25 1 -0.3634 -1.0203 0.1226 26 1 -0.3634 0.6163 0.8223 27 1 1.6957 1.9115 -0.8033 28 1 3.1747 1.1534 -0.2091 29 1 0.9129 2.1819 1.5384 30 1 2.4046 3.0354 1.1706 31 1 2.6661 2.0686 3.3272 32 1 3.7119 1.1915 2.1997 33 1 0.4444 1.1823 3.6778 34 1 0.0142 -0.0102 2.4283 35 1 0.6185 -1.8505 3.9765 36 1 1.0488 -0.6580 5.2260 37 1 -1.0237 -3.1191 7.0183 38 1 3.4099 -1.8703 3.6858 39 1 3.4746 -4.0302 0.0040 40 1 2.1890 -2.2221 -1.0738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128604608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:28 Heat of formation + Delta-G solvation = 16.160229 kcal Electronic energy + Delta-G solvation = -22231.144792 eV Core-core repulsion = 19070.828272 eV Total energy + Delta-G solvation = -3160.316520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.71457 -38.55788 -37.47943 -37.03597 -35.27861 -33.33325 -32.00523 -31.23034 -29.67435 -27.51377 -26.34985 -25.73413 -23.60930 -23.35636 -21.23808 -20.97827 -18.62571 -18.36939 -17.46081 -17.15902 -16.49191 -16.40731 -16.12244 -15.95123 -15.13811 -14.78383 -14.70190 -14.61170 -14.22002 -14.08337 -13.70092 -13.59627 -13.28399 -13.10843 -12.91747 -12.75070 -12.51550 -12.47619 -12.13157 -12.05957 -11.84484 -11.82577 -11.70445 -11.51053 -11.26603 -10.56839 -9.75978 -9.59806 -9.17374 -8.85216 -8.20240 -6.32483 0.14893 0.31792 1.17411 1.37850 1.39463 1.50332 2.37556 2.57921 2.66184 2.89415 3.12779 3.82467 3.92123 4.05730 4.12576 4.22514 4.28420 4.37054 4.41808 4.48997 4.55927 4.61898 4.71731 4.74661 4.86959 4.90517 4.97399 4.99513 5.07530 5.11510 5.24932 5.28403 5.44419 5.52095 5.59081 5.68816 5.79935 6.15775 6.32858 6.44500 6.49665 6.76112 6.86394 7.36750 8.91519 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.006189 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.806271 B = 4522.996166 C = 5993.745835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.581 5.581 3 C 0.104 3.896 4 C -0.186 4.186 5 C 0.089 3.911 6 N -0.578 5.578 7 C 0.124 3.876 8 C 0.043 3.957 9 C -0.543 4.543 10 H 0.059 0.941 11 C 0.003 3.997 12 N -0.929 5.929 13 Si 0.964 3.036 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.261 1.261 17 C 0.104 3.896 18 C -0.101 4.101 19 C -0.042 4.042 20 Cl -0.076 7.076 21 C -0.109 4.109 22 C -0.089 4.089 23 C 0.107 3.893 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.017 0.983 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.029 0.971 35 H -0.017 1.017 36 H -0.014 1.014 37 H 0.263 0.737 38 H 0.114 0.886 39 H 0.160 0.840 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.002 5.055 -16.227 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.302 5.302 3 C -0.022 4.022 4 C -0.227 4.227 5 C -0.036 4.036 6 N -0.299 5.299 7 C -0.001 4.001 8 C 0.006 3.994 9 C -0.581 4.581 10 H 0.077 0.923 11 C -0.195 4.195 12 N -0.569 5.569 13 Si 0.788 3.212 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.185 1.185 17 C 0.008 3.992 18 C -0.122 4.122 19 C -0.070 4.070 20 Cl -0.047 7.047 21 C -0.128 4.128 22 C -0.108 4.108 23 C 0.011 3.989 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.001 0.999 36 H 0.005 0.995 37 H 0.071 0.929 38 H 0.132 0.868 39 H 0.177 0.823 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.255 4.739 -15.996 18.614 hybrid contribution -1.129 -0.021 1.259 1.692 sum 7.126 4.718 -14.737 17.036 Atomic orbital electron populations 1.21540 0.82794 1.01332 1.01223 1.50965 1.05887 1.08546 1.64820 1.21167 0.99093 0.85744 0.96191 1.22399 1.01367 1.01920 0.97036 1.21506 0.97386 0.87729 0.96986 1.53624 1.20016 1.05734 1.50559 1.21167 0.83387 0.99070 0.96458 1.18896 0.94629 0.93104 0.92816 1.21561 0.96455 1.18929 1.21190 0.92254 1.25953 1.02480 0.94816 0.96282 1.70128 1.37285 1.21937 1.27540 0.85473 0.79320 0.78967 0.77451 1.19789 1.20748 1.18526 1.18946 0.97846 0.92215 0.90149 1.21519 0.98087 0.92903 0.99697 1.20879 1.00525 0.91054 0.94491 1.98346 1.72576 1.50848 1.82912 1.21147 0.99039 1.00541 0.92086 1.21586 0.96522 0.91829 1.00912 1.18459 0.97933 0.92943 0.89574 0.89126 0.92801 0.96419 0.88518 0.90769 0.93205 0.88580 0.90929 0.90762 0.92189 0.95261 0.99885 0.99537 0.92853 0.86833 0.82292 0.82296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.92 9.26 128.15 1.19 3.11 16 2 N -0.58 -14.64 3.45 -734.06 -2.53 -17.17 16 3 C 0.10 2.14 5.43 86.32 0.47 2.61 16 4 C -0.19 -4.20 5.29 29.72 0.16 -4.04 16 5 C 0.09 2.53 5.46 86.07 0.47 3.00 16 6 N -0.58 -21.32 3.43 -705.30 -2.42 -23.73 16 7 C 0.12 5.34 4.47 86.78 0.39 5.73 16 8 C 0.04 2.39 5.11 29.85 0.15 2.54 16 9 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 10 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 11 C 0.00 0.17 5.46 84.66 0.46 0.63 16 12 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16 13 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 17 C 0.10 3.69 4.18 38.23 0.16 3.85 16 18 C -0.10 -3.72 9.48 22.73 0.22 -3.51 16 19 C -0.04 -1.33 6.31 22.24 0.14 -1.19 16 20 Cl -0.08 -2.24 28.95 -2.72 -0.08 -2.32 16 21 C -0.11 -2.81 9.80 22.23 0.22 -2.59 16 22 C -0.09 -2.24 9.87 22.58 0.22 -2.01 16 23 C 0.11 3.18 4.78 38.28 0.18 3.36 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 1.51 7.93 -2.39 -0.02 1.49 16 26 H 0.02 0.51 5.38 -2.39 -0.01 0.50 16 27 H 0.10 1.55 8.21 -1.96 -0.02 1.54 16 28 H 0.07 1.46 8.16 -1.99 -0.02 1.44 16 29 H 0.05 1.29 6.67 -2.63 -0.02 1.27 16 30 H 0.10 1.63 8.21 -1.94 -0.02 1.62 16 31 H 0.07 2.03 8.18 -2.17 -0.02 2.01 16 32 H 0.07 1.95 8.00 -2.16 -0.02 1.94 16 33 H 0.06 2.52 7.92 -2.39 -0.02 2.50 16 34 H 0.03 1.25 5.00 -2.38 -0.01 1.24 16 35 H -0.02 -1.05 7.73 -2.38 -0.02 -1.07 16 36 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.11 4.65 8.04 -3.01 -0.02 4.62 16 39 H 0.16 3.11 8.06 -2.87 -0.02 3.09 16 40 H 0.16 3.12 8.06 -2.89 -0.02 3.09 16 Total: -1.00 -67.29 331.84 2.98 -64.31 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.04 Total: 9.54 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 4.66 Total: -19.76 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -4.66 Total: -98.63 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.08 Total: -2.32 kcal Total: -67.29 2.98 -64.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128604608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.468 kcal (2) G-P(sol) polarization free energy of solvation -67.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds