Wall clock time and date at job start Tue Mar 31 2020 07:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36061 * 117.00187 * 2 1 4 4 C 1.37790 * 119.90488 * 359.97438 * 3 2 1 5 5 C 1.40253 * 119.87572 * 180.02562 * 4 3 2 6 6 C 1.46476 * 120.14835 * 179.97438 * 5 4 3 7 7 C 1.50697 * 119.99880 * 0.02562 * 6 5 4 8 8 O 1.21334 * 120.00074 * 180.02562 * 6 5 4 9 9 C 1.40569 * 119.70046 * 0.02562 * 5 4 3 10 10 O 1.35678 * 120.09337 * 180.02562 * 9 5 4 11 11 C 1.42896 * 117.00244 * 179.97438 * 10 9 5 12 12 C 1.38394 * 119.81797 * 359.97438 * 9 5 4 13 13 C 1.38648 * 120.11698 * 0.25673 * 12 9 5 14 14 O 1.35736 * 119.84666 * 179.72142 * 13 12 9 15 15 C 1.42908 * 117.00106 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47052 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47120 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99894 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00101 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00017 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47240 * 89.99614 * 21 19 17 23 23 H 1.48499 * 109.47328 * 209.99938 * 21 19 17 24 24 H 1.48508 * 109.47202 * 329.99615 * 21 19 17 25 25 H 1.09007 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46944 * 300.00226 * 1 2 3 27 27 H 1.08998 * 109.47055 * 60.00582 * 1 2 3 28 28 H 1.07998 * 120.06702 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.46937 * 90.00032 * 7 6 5 30 30 H 1.09001 * 109.47441 * 210.00200 * 7 6 5 31 31 H 1.09003 * 109.47450 * 330.00448 * 7 6 5 32 32 H 1.09001 * 109.47239 * 60.00028 * 11 10 9 33 33 H 1.09002 * 109.47151 * 180.02562 * 11 10 9 34 34 H 1.08996 * 109.47038 * 300.00537 * 11 10 9 35 35 H 1.08002 * 119.93873 * 179.97438 * 12 9 5 36 36 H 1.08990 * 109.47255 * 300.00226 * 15 14 13 37 37 H 1.09001 * 109.46619 * 60.00659 * 15 14 13 38 38 H 1.08998 * 109.47631 * 300.00981 * 16 15 14 39 39 H 1.09006 * 109.47078 * 60.00752 * 16 15 14 40 40 H 0.97005 * 120.00007 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2944 2.3667 -0.0005 5 6 1.9318 3.6160 -0.0011 6 6 1.1379 4.8469 -0.0022 7 6 -0.3672 4.7728 -0.0022 8 8 1.6921 5.9263 -0.0032 9 6 3.3360 3.6815 -0.0016 10 8 3.9609 4.8858 -0.0016 11 6 5.3898 4.8753 -0.0016 12 6 4.0793 2.5141 -0.0011 13 6 3.4414 1.2831 -0.0054 14 8 4.1758 0.1416 -0.0105 15 6 5.5977 0.2850 -0.0118 16 6 6.2498 -1.0990 -0.0171 17 6 7.7492 -0.9479 -0.0178 18 1 8.1926 0.0369 -0.0144 19 6 8.5549 -2.0668 -0.0229 20 7 8.0149 -3.2659 -0.0276 21 14 10.4134 -1.8794 -0.0230 22 1 10.9066 -1.8355 1.3770 23 1 11.0272 -3.0332 -0.7282 24 1 10.7840 -0.6205 -0.7181 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.2159 2.3097 -0.0005 29 1 -0.7302 4.7558 1.0255 30 1 -0.7740 5.6433 -0.5169 31 1 -0.6864 3.8655 -0.5152 32 1 5.7494 4.3588 -0.8916 33 1 5.7607 5.9002 -0.0012 34 1 5.7493 4.3587 0.8883 35 1 5.1583 2.5621 -0.0019 36 1 5.9065 0.8360 -0.9000 37 1 5.9087 0.8293 0.8799 38 1 5.9408 -1.6498 0.8713 39 1 5.9388 -1.6438 -0.9086 40 1 8.5817 -4.0531 -0.0308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129066711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:36 Heat of formation + Delta-G solvation = -127.694329 kcal Electronic energy + Delta-G solvation = -23484.923396 eV Core-core repulsion = 19845.366959 eV Total energy + Delta-G solvation = -3639.556437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90283 -39.27340 -38.65241 -38.20204 -35.76213 -33.45606 -31.64761 -30.45595 -29.46495 -29.15077 -27.85050 -26.54520 -25.21758 -23.27488 -22.22367 -20.83069 -20.01406 -18.72551 -17.58050 -17.03266 -16.66833 -16.17745 -15.90521 -15.58272 -15.35198 -15.15107 -14.80879 -14.72458 -14.67462 -14.54337 -14.21058 -13.41044 -12.83133 -12.58408 -12.40556 -12.34707 -12.26001 -12.06792 -11.76614 -11.57937 -11.51839 -11.48127 -11.00142 -10.96317 -10.66926 -10.31351 -9.92025 -9.75314 -9.61247 -9.36664 -8.67647 -8.49589 -7.52801 -6.14980 -4.20379 0.71649 1.36029 2.48432 3.15942 3.24022 3.29742 3.32160 3.34693 3.52547 3.69916 4.09322 4.35433 4.60277 4.85617 4.92255 5.02528 5.09955 5.14966 5.16441 5.17483 5.21502 5.23627 5.26445 5.36031 5.43318 5.48013 5.62815 5.78793 5.88605 5.89345 5.98732 6.15840 6.40031 6.55428 7.17063 7.23486 7.48020 7.57191 7.66386 7.72767 7.92466 8.16617 8.84864 9.44245 10.96440 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.003752 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.744068 B = 7460.717346 C = 8922.096773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.301 6.301 3 C 0.044 3.956 4 C -0.097 4.097 5 C -0.230 4.230 6 C 0.397 3.603 7 C -0.198 4.198 8 O -0.453 6.453 9 C 0.200 3.800 10 O -0.285 6.285 11 C 0.019 3.981 12 C -0.292 4.292 13 C 0.200 3.800 14 O -0.291 6.291 15 C 0.060 3.940 16 C 0.026 3.974 17 C -0.529 4.529 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.888 5.888 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.147 0.853 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.151 0.849 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.732 12.646 0.113 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C -0.001 4.001 4 C -0.116 4.116 5 C -0.232 4.232 6 C 0.276 3.724 7 C -0.255 4.255 8 O -0.330 6.330 9 C 0.152 3.848 10 O -0.197 6.197 11 C -0.077 4.077 12 C -0.312 4.312 13 C 0.151 3.849 14 O -0.203 6.203 15 C -0.014 4.014 16 C -0.011 4.011 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.525 5.525 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.118 0.882 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.164 0.836 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.168 0.832 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.421 12.807 0.104 20.046 hybrid contribution 1.213 -0.065 0.016 1.215 sum -14.207 12.742 0.119 19.085 Atomic orbital electron populations 1.23050 0.79152 1.04023 1.00744 1.86268 1.20397 1.25142 1.89678 1.17999 0.89143 0.85371 1.07618 1.21043 0.99723 0.89715 1.01075 1.19388 0.90491 0.94886 1.18417 1.21918 0.90971 0.87500 0.72010 1.22213 0.94516 1.04386 1.04362 1.90578 1.74870 1.30828 1.36680 1.18870 0.90879 0.84233 0.90833 1.86266 1.20940 1.25687 1.86758 1.23197 0.78380 1.04198 1.01879 1.21225 1.01480 0.90735 1.17720 1.18507 0.88591 0.86462 0.91379 1.86282 1.21792 1.27083 1.85109 1.23504 0.74204 1.03836 0.99866 1.19130 0.94301 0.88508 0.99140 1.20938 0.90189 0.92942 1.52634 0.92374 1.24984 0.99177 0.95123 0.94819 1.69974 1.35574 0.97596 1.49399 0.86484 0.84799 0.77837 0.78246 1.20461 1.21002 1.19756 0.88211 0.92957 0.92972 0.83578 0.88845 0.89706 0.90033 0.92260 0.87973 0.92267 0.83171 0.92782 0.92788 0.95204 0.95192 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.51 10.27 -34.65 -0.36 -4.86 16 3 C 0.04 0.66 6.69 -39.22 -0.26 0.40 16 4 C -0.10 -1.17 8.33 -38.99 -0.32 -1.50 16 5 C -0.23 -3.17 5.88 -104.94 -0.62 -3.79 16 6 C 0.40 5.12 7.20 -30.99 -0.22 4.90 16 7 C -0.20 -1.57 9.75 36.00 0.35 -1.22 16 8 O -0.45 -7.42 15.89 -16.48 -0.26 -7.68 16 9 C 0.20 3.06 6.70 -38.65 -0.26 2.80 16 10 O -0.29 -4.31 8.55 -40.73 -0.35 -4.66 16 11 C 0.02 0.21 9.81 101.05 0.99 1.20 16 12 C -0.29 -4.60 8.00 -39.37 -0.32 -4.91 16 13 C 0.20 3.48 6.71 -38.91 -0.26 3.22 16 14 O -0.29 -5.95 9.90 -33.63 -0.33 -6.28 16 15 C 0.06 1.24 4.67 37.16 0.17 1.41 16 16 C 0.03 0.68 5.34 -27.89 -0.15 0.53 16 17 C -0.53 -14.42 9.11 -34.44 -0.31 -14.73 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 21 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 26 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 27 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 28 H 0.15 1.21 4.55 -52.49 -0.24 0.97 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.48 6.45 -51.93 -0.33 0.14 16 32 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.15 2.23 4.48 -52.49 -0.24 1.99 16 36 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 37 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -33.65 338.53 -6.07 -39.72 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -5.27 Total: -3.05 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.32 Total: -8.84 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.74 Total: -25.32 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.30 Total: -23.48 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.65 -6.07 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129066711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.976 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds