Wall clock time and date at job start Tue Mar 31 2020 07:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36061 * 117.00187 * 2 1 4 4 C 1.37790 * 119.90488 * 359.97438 * 3 2 1 5 5 C 1.40253 * 119.87572 * 180.02562 * 4 3 2 6 6 C 1.46476 * 120.14835 * 179.97438 * 5 4 3 7 7 C 1.50697 * 119.99880 * 0.02562 * 6 5 4 8 8 O 1.21334 * 120.00074 * 180.02562 * 6 5 4 9 9 C 1.40569 * 119.70046 * 0.02562 * 5 4 3 10 10 O 1.35678 * 120.09337 * 180.02562 * 9 5 4 11 11 C 1.42896 * 117.00244 * 179.97438 * 10 9 5 12 12 C 1.38394 * 119.81797 * 359.97438 * 9 5 4 13 13 C 1.38648 * 120.11698 * 0.25673 * 12 9 5 14 14 O 1.35736 * 119.84666 * 179.72142 * 13 12 9 15 15 C 1.42908 * 117.00106 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47052 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47120 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99894 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00101 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00017 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47240 * 89.99614 * 21 19 17 23 23 H 1.48499 * 109.47328 * 209.99938 * 21 19 17 24 24 H 1.48508 * 109.47202 * 329.99615 * 21 19 17 25 25 H 1.09007 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46944 * 300.00226 * 1 2 3 27 27 H 1.08998 * 109.47055 * 60.00582 * 1 2 3 28 28 H 1.07998 * 120.06702 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.46937 * 90.00032 * 7 6 5 30 30 H 1.09001 * 109.47441 * 210.00200 * 7 6 5 31 31 H 1.09003 * 109.47450 * 330.00448 * 7 6 5 32 32 H 1.09001 * 109.47239 * 60.00028 * 11 10 9 33 33 H 1.09002 * 109.47151 * 180.02562 * 11 10 9 34 34 H 1.08996 * 109.47038 * 300.00537 * 11 10 9 35 35 H 1.08002 * 119.93873 * 179.97438 * 12 9 5 36 36 H 1.08990 * 109.47255 * 300.00226 * 15 14 13 37 37 H 1.09001 * 109.46619 * 60.00659 * 15 14 13 38 38 H 1.08998 * 109.47631 * 300.00981 * 16 15 14 39 39 H 1.09006 * 109.47078 * 60.00752 * 16 15 14 40 40 H 0.97005 * 120.00007 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2944 2.3667 -0.0005 5 6 1.9318 3.6160 -0.0011 6 6 1.1379 4.8469 -0.0022 7 6 -0.3672 4.7728 -0.0022 8 8 1.6921 5.9263 -0.0032 9 6 3.3360 3.6815 -0.0016 10 8 3.9609 4.8858 -0.0016 11 6 5.3898 4.8753 -0.0016 12 6 4.0793 2.5141 -0.0011 13 6 3.4414 1.2831 -0.0054 14 8 4.1758 0.1416 -0.0105 15 6 5.5977 0.2850 -0.0118 16 6 6.2498 -1.0990 -0.0171 17 6 7.7492 -0.9479 -0.0178 18 1 8.1926 0.0369 -0.0144 19 6 8.5549 -2.0668 -0.0229 20 7 8.0149 -3.2659 -0.0276 21 14 10.4134 -1.8794 -0.0230 22 1 10.9066 -1.8355 1.3770 23 1 11.0272 -3.0332 -0.7282 24 1 10.7840 -0.6205 -0.7181 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.2159 2.3097 -0.0005 29 1 -0.7302 4.7558 1.0255 30 1 -0.7740 5.6433 -0.5169 31 1 -0.6864 3.8655 -0.5152 32 1 5.7494 4.3588 -0.8916 33 1 5.7607 5.9002 -0.0012 34 1 5.7493 4.3587 0.8883 35 1 5.1583 2.5621 -0.0019 36 1 5.9065 0.8360 -0.9000 37 1 5.9087 0.8293 0.8799 38 1 5.9408 -1.6498 0.8713 39 1 5.9388 -1.6438 -0.9086 40 1 8.5817 -4.0531 -0.0308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129066711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:35 Heat of formation + Delta-G solvation = -148.641928 kcal Electronic energy + Delta-G solvation = -23485.831752 eV Core-core repulsion = 19845.366959 eV Total energy + Delta-G solvation = -3640.464793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.03796 -40.41380 -39.75841 -39.41394 -36.90498 -35.48496 -32.90453 -32.07936 -30.61824 -30.06955 -28.74398 -27.50015 -26.98132 -24.55401 -23.64098 -22.28173 -21.08027 -20.00973 -18.58379 -18.54450 -18.11145 -17.40008 -17.37632 -16.69730 -16.58314 -16.37802 -16.34073 -15.71770 -15.67875 -15.63522 -15.42985 -14.47811 -14.28052 -14.23888 -13.82103 -13.41225 -13.26552 -12.97242 -12.89918 -12.73632 -12.70684 -12.52149 -12.47861 -12.45072 -12.33321 -11.74370 -11.65482 -11.44109 -11.23046 -10.63102 -10.62786 -9.86183 -8.68378 -8.27496 -6.41487 -0.40132 0.24044 1.40729 1.42718 1.43558 1.53651 2.10245 2.17281 2.40986 2.42953 2.59627 3.07200 3.16336 3.55903 3.76033 3.96976 4.11320 4.19315 4.23105 4.28297 4.28728 4.32105 4.38718 4.50504 4.51706 4.60377 4.67468 4.72857 4.74641 4.81938 4.88728 5.03435 5.26038 5.29441 5.34500 5.44059 5.66467 6.00942 6.11626 6.20469 6.58867 6.70252 6.73114 7.28794 8.85600 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.003752 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.744068 B = 7460.717346 C = 8922.096773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.335 6.335 3 C 0.036 3.964 4 C -0.071 4.071 5 C -0.232 4.232 6 C 0.396 3.604 7 C -0.191 4.191 8 O -0.494 6.494 9 C 0.180 3.820 10 O -0.303 6.303 11 C 0.011 3.989 12 C -0.289 4.289 13 C 0.161 3.839 14 O -0.318 6.318 15 C 0.078 3.922 16 C 0.030 3.970 17 C -0.546 4.546 18 H 0.072 0.928 19 C 0.003 3.997 20 N -0.930 5.930 21 Si 0.975 3.025 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.258 1.258 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.193 0.807 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.062 0.938 35 H 0.152 0.848 36 H 0.065 0.935 37 H 0.065 0.935 38 H -0.001 1.001 39 H -0.001 1.001 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.093 14.318 0.148 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.250 6.250 3 C -0.009 4.009 4 C -0.089 4.089 5 C -0.234 4.234 6 C 0.277 3.723 7 C -0.247 4.247 8 O -0.373 6.373 9 C 0.132 3.868 10 O -0.214 6.214 11 C -0.083 4.083 12 C -0.308 4.308 13 C 0.113 3.887 14 O -0.231 6.231 15 C 0.004 3.996 16 C -0.007 4.007 17 C -0.584 4.584 18 H 0.090 0.910 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.799 3.201 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.182 1.182 25 H 0.129 0.871 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.210 0.790 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.169 0.831 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.814 14.497 0.138 22.201 hybrid contribution 1.462 -0.540 0.008 1.558 sum -15.352 13.957 0.146 20.748 Atomic orbital electron populations 1.23461 0.76166 1.05725 1.02934 1.86234 1.23657 1.25361 1.89749 1.18189 0.88555 0.86570 1.07556 1.21419 1.01577 0.87713 0.98213 1.19905 0.90311 0.96344 1.16871 1.22619 0.93261 0.86155 0.70237 1.22255 0.89948 1.06219 1.06305 1.90570 1.76155 1.32001 1.38550 1.19143 0.91865 0.84101 0.91661 1.86251 1.22659 1.25676 1.86844 1.23433 0.76860 1.05828 1.02213 1.21221 1.01676 0.90571 1.17365 1.18881 0.89623 0.85878 0.94342 1.86191 1.21112 1.29128 1.86682 1.23034 0.75140 1.00553 1.00866 1.18947 0.94749 0.90872 0.96158 1.21383 0.91010 0.93735 1.52281 0.90959 1.26026 1.04802 0.94636 0.94132 1.70121 1.37704 0.98605 1.50491 0.85298 0.77939 0.78270 0.78642 1.19575 1.20748 1.18238 0.87100 0.90632 0.90641 0.79006 0.86541 0.88918 0.87260 0.91936 0.85751 0.91916 0.83062 0.91719 0.91707 0.98248 0.98237 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -9.76 10.27 -80.17 -0.82 -10.59 16 3 C 0.04 1.08 6.69 22.50 0.15 1.23 16 4 C -0.07 -1.52 8.33 22.65 0.19 -1.33 16 5 C -0.23 -5.98 5.88 -20.07 -0.12 -6.10 16 6 C 0.40 9.24 7.20 27.83 0.20 9.44 16 7 C -0.19 -2.17 9.75 71.24 0.69 -1.47 16 8 O -0.49 -15.59 15.89 17.83 0.28 -15.31 16 9 C 0.18 5.45 6.70 22.88 0.15 5.60 16 10 O -0.30 -9.07 8.55 -68.93 -0.59 -9.66 16 11 C 0.01 0.24 9.81 113.37 1.11 1.36 16 12 C -0.29 -9.20 8.00 22.40 0.18 -9.02 16 13 C 0.16 5.70 6.71 22.71 0.15 5.85 16 14 O -0.32 -13.60 9.90 -76.53 -0.76 -14.35 16 15 C 0.08 3.37 4.67 71.98 0.34 3.70 16 16 C 0.03 1.62 5.34 29.85 0.16 1.78 16 17 C -0.55 -30.39 9.11 25.60 0.23 -30.16 16 18 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 19 C 0.00 0.16 5.46 84.66 0.46 0.62 16 20 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 21 Si 0.98 42.98 29.54 68.60 2.03 45.00 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.08 0.79 7.65 -2.39 -0.02 0.77 16 27 H 0.08 0.79 7.65 -2.39 -0.02 0.77 16 28 H 0.19 2.17 4.55 -2.91 -0.01 2.15 16 29 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.64 6.45 -2.39 -0.02 0.62 16 32 H 0.06 1.33 7.66 -2.39 -0.02 1.31 16 33 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.33 7.66 -2.39 -0.02 1.31 16 35 H 0.15 4.58 4.48 -2.91 -0.01 4.57 16 36 H 0.06 2.59 7.65 -2.39 -0.02 2.57 16 37 H 0.06 2.59 7.65 -2.39 -0.02 2.58 16 38 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 40 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -77.07 338.53 6.50 -70.57 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.06 Total: 7.53 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 5.02 Total: -17.23 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.28 Total: -55.97 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -1.89 Total: -49.91 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -77.07 6.50 -70.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129066711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.075 kcal (2) G-P(sol) polarization free energy of solvation -77.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds