Wall clock time and date at job start Tue Mar 31 2020 07:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46900 * 110.99469 * 2 1 4 4 C 1.50696 * 109.47094 * 293.94651 * 3 2 1 5 5 H 1.07999 * 119.99997 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99963 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00159 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 120.00219 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46787 * 60.00202 * 8 6 4 10 10 H 1.48496 * 109.46987 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46917 * 300.00770 * 8 6 4 12 12 C 1.46898 * 110.99641 * 123.94925 * 2 1 3 13 13 H 1.09002 * 109.40248 * 186.22050 * 12 2 1 14 14 C 1.53374 * 109.31053 * 66.54483 * 12 2 1 15 15 C 1.53345 * 108.27540 * 191.12186 * 14 12 2 16 16 C 1.52924 * 108.80962 * 67.41013 * 15 14 12 17 17 N 1.45751 * 110.48679 * 309.16273 * 16 15 14 18 18 C 1.46504 * 117.94589 * 199.07406 * 17 16 15 19 19 C 1.52999 * 109.47035 * 90.00418 * 18 17 16 20 20 F 1.39901 * 109.47170 * 59.99972 * 19 18 17 21 21 F 1.39899 * 109.46882 * 180.02562 * 19 18 17 22 22 F 1.39905 * 109.46858 * 299.99851 * 19 18 17 23 23 C 1.33358 * 124.10607 * 19.10338 * 17 16 15 24 24 O 1.21277 * 118.24270 * 177.77486 * 23 17 16 25 25 H 1.08991 * 109.47417 * 296.04651 * 1 2 3 26 26 H 1.09002 * 109.46813 * 56.04944 * 1 2 3 27 27 H 1.09004 * 109.46702 * 176.04696 * 1 2 3 28 28 H 1.09003 * 109.47524 * 53.95540 * 3 2 1 29 29 H 1.09007 * 109.46554 * 173.95018 * 3 2 1 30 30 H 0.96995 * 120.00089 * 179.97438 * 7 6 4 31 31 H 1.08993 * 109.91371 * 71.33227 * 14 12 2 32 32 H 1.08998 * 109.58066 * 310.70882 * 14 12 2 33 33 H 1.09002 * 109.60400 * 307.57080 * 15 14 12 34 34 H 1.08997 * 109.60192 * 187.24937 * 15 14 12 35 35 H 1.09000 * 109.29553 * 69.47820 * 16 15 14 36 36 H 1.08998 * 109.29870 * 188.85112 * 16 15 14 37 37 H 1.08998 * 109.47017 * 210.00463 * 18 17 16 38 38 H 1.09005 * 109.47018 * 329.99995 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0741 1.5113 -2.0485 6 6 2.0276 3.3491 -1.5290 7 7 2.7135 4.0013 -0.6158 8 14 1.5828 4.1868 -3.1383 9 1 0.1055 4.2242 -3.2849 10 1 2.1160 5.5727 -3.1387 11 1 2.1735 3.4291 -4.2706 12 6 1.9954 -0.7659 1.1377 13 1 3.0794 -0.6578 1.1765 14 6 1.6393 -2.2471 0.9601 15 6 1.9458 -2.9762 2.2739 16 6 0.9750 -2.4849 3.3485 17 7 0.9641 -1.0283 3.3987 18 6 0.4455 -0.3869 4.6095 19 6 1.5891 -0.1733 5.6032 20 9 2.5643 0.6450 5.0231 21 9 1.0938 0.4386 6.7596 22 9 2.1548 -1.4090 5.9357 23 6 1.3960 -0.2428 2.4113 24 8 1.3000 0.9582 2.5497 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 1.5611 1.9274 0.8309 29 1 3.0798 1.3444 0.1083 30 1 2.9887 4.9171 -0.7781 31 1 2.2334 -2.6778 0.1542 32 1 0.5790 -2.3424 0.7264 33 1 2.9696 -2.7623 2.5806 34 1 1.8230 -4.0500 2.1335 35 1 -0.0280 -2.8451 3.1197 36 1 1.2826 -2.8765 4.3181 37 1 0.0048 0.5757 4.3504 38 1 -0.3143 -1.0245 5.0615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156651007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:25 Heat of formation + Delta-G solvation = -173.414495 kcal Electronic energy + Delta-G solvation = -25596.570466 eV Core-core repulsion = 21445.467464 eV Total energy + Delta-G solvation = -4151.103002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.06290 -47.64143 -47.47374 -40.68572 -36.65576 -36.32969 -33.43401 -32.18421 -29.23600 -28.88109 -27.02859 -25.49651 -23.94518 -23.05357 -21.93571 -20.66763 -18.90276 -18.48345 -18.17537 -17.74284 -16.53731 -16.36050 -16.18422 -15.27966 -14.78861 -14.50646 -14.50341 -14.19311 -14.10289 -13.99680 -13.96333 -13.68806 -13.66187 -13.43642 -13.17197 -12.60091 -12.39798 -12.13922 -11.97213 -11.70215 -11.33867 -11.25825 -11.02421 -10.98811 -10.72423 -10.50778 -10.28589 -9.79682 -9.63749 -9.11442 -8.92426 -8.34413 -7.20021 -5.90360 -3.92100 2.50562 2.77139 3.03284 3.38784 3.42733 3.45190 3.80201 3.98373 4.23619 4.45671 4.61931 4.63674 4.70547 4.88928 4.98423 5.08257 5.30206 5.31894 5.44056 5.51055 5.53095 5.77042 5.81158 6.05488 6.06164 6.23012 6.29762 6.35094 6.72714 7.24473 7.37838 7.69995 7.83613 8.06373 8.22180 8.41283 8.60638 9.15392 9.69696 11.19907 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.004873 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.246624 B = 5744.640844 C = 6618.553473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.509 5.509 3 C 0.178 3.822 4 C -0.510 4.510 5 H 0.060 0.940 6 C 0.056 3.944 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.076 3.924 13 H 0.108 0.892 14 C -0.115 4.115 15 C -0.134 4.134 16 C 0.111 3.889 17 N -0.610 5.610 18 C 0.066 3.934 19 C 0.434 3.566 20 F -0.170 7.170 21 F -0.186 7.186 22 F -0.188 7.188 23 C 0.486 3.514 24 O -0.506 6.506 25 H 0.018 0.982 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.024 0.976 30 H 0.260 0.740 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 -16.118 11.828 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.232 5.232 3 C 0.054 3.946 4 C -0.549 4.549 5 H 0.078 0.922 6 C -0.146 4.146 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.037 4.037 13 H 0.126 0.874 14 C -0.153 4.153 15 C -0.172 4.172 16 C -0.012 4.012 17 N -0.346 5.346 18 C -0.061 4.061 19 C 0.378 3.622 20 F -0.151 7.151 21 F -0.167 7.167 22 F -0.170 7.170 23 C 0.273 3.727 24 O -0.378 6.378 25 H 0.037 0.963 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.148 0.852 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.408 -15.481 11.424 19.739 hybrid contribution -0.242 0.953 0.252 1.015 sum -4.649 -14.529 11.676 19.210 Atomic orbital electron populations 1.22363 0.88890 0.99444 1.01421 1.62676 1.07313 1.19515 1.33696 1.20094 0.95316 0.81231 0.97972 1.21118 1.35058 0.97049 1.01641 0.92218 1.24968 0.95485 0.97314 0.96792 1.69981 1.38133 1.11344 1.33848 0.86603 0.78599 0.78415 0.83982 1.20400 1.21414 1.20267 1.21995 1.00985 0.94685 0.86011 0.87450 1.21821 1.02931 0.93482 0.97086 1.21873 0.99693 1.00786 0.94874 1.21533 1.00340 0.78704 1.00589 1.47732 1.64703 1.07233 1.14951 1.22527 0.92819 1.04858 0.85857 1.21357 0.85500 0.73954 0.81406 1.93275 1.65144 1.72861 1.83824 1.93171 1.87509 1.83647 1.52391 1.93140 1.87027 1.43496 1.93307 1.22313 0.77661 0.87327 0.85352 1.90807 1.53394 1.14831 1.78808 0.96345 0.90240 0.93540 0.94683 0.95768 0.92996 0.89814 0.90881 0.90842 0.89561 0.91516 0.90489 0.85233 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 8.76 60.07 0.53 1.06 16 2 N -0.51 -10.96 4.70 -237.80 -1.12 -12.07 16 3 C 0.18 4.85 4.16 -4.98 -0.02 4.82 16 4 C -0.51 -14.75 8.46 -34.44 -0.29 -15.04 16 5 H 0.06 1.68 7.12 -52.49 -0.37 1.31 16 6 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 7 N -0.89 -27.79 13.29 55.43 0.74 -27.06 16 8 Si 0.90 22.22 29.54 -169.99 -5.02 17.19 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.08 1.33 2.48 -68.93 -0.17 1.16 16 13 H 0.11 1.95 7.92 -51.93 -0.41 1.54 16 14 C -0.12 -1.41 5.48 -26.36 -0.14 -1.55 16 15 C -0.13 -1.22 6.01 -26.59 -0.16 -1.37 16 16 C 0.11 1.01 6.18 -4.48 -0.03 0.98 16 17 N -0.61 -7.97 2.75 -174.96 -0.48 -8.45 16 18 C 0.07 0.77 5.32 -4.04 -0.02 0.75 16 19 C 0.43 5.67 3.29 37.16 0.12 5.79 16 20 F -0.17 -2.90 16.08 2.25 0.04 -2.86 16 21 F -0.19 -2.36 17.32 2.25 0.04 -2.32 16 22 F -0.19 -2.27 15.89 2.25 0.04 -2.24 16 23 C 0.49 8.59 5.28 -11.87 -0.06 8.53 16 24 O -0.51 -11.35 11.62 5.56 0.06 -11.29 16 25 H 0.02 0.38 6.44 -51.93 -0.33 0.04 16 26 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 27 H 0.05 0.74 6.28 -51.93 -0.33 0.41 16 28 H 0.04 1.06 5.73 -51.93 -0.30 0.77 16 29 H 0.02 0.71 7.93 -51.92 -0.41 0.30 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.88 6.14 -51.93 -0.32 0.56 16 33 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.60 6.88 -51.93 -0.36 0.24 16 37 H 0.13 1.72 7.13 -51.93 -0.37 1.35 16 38 H 0.12 0.88 8.02 -51.93 -0.42 0.46 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -34.27 310.59 -6.17 -40.44 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.79 Total: -2.69 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.35 Total: 6.66 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.86 Total: -47.58 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.06 Total: -11.29 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.11 Total: -7.42 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.27 -6.17 -40.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156651007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.974 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds