Wall clock time and date at job start Tue Mar 31 2020 07:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46900 * 110.99469 * 2 1 4 4 C 1.50696 * 109.47094 * 293.94651 * 3 2 1 5 5 H 1.07999 * 119.99997 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99963 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00159 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 120.00219 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46787 * 60.00202 * 8 6 4 10 10 H 1.48496 * 109.46987 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46917 * 300.00770 * 8 6 4 12 12 C 1.46898 * 110.99641 * 123.94925 * 2 1 3 13 13 H 1.09002 * 109.40248 * 186.22050 * 12 2 1 14 14 C 1.53374 * 109.31053 * 66.54483 * 12 2 1 15 15 C 1.53345 * 108.27540 * 191.12186 * 14 12 2 16 16 C 1.52924 * 108.80962 * 67.41013 * 15 14 12 17 17 N 1.45751 * 110.48679 * 309.16273 * 16 15 14 18 18 C 1.46504 * 117.94589 * 199.07406 * 17 16 15 19 19 C 1.52999 * 109.47035 * 90.00418 * 18 17 16 20 20 F 1.39901 * 109.47170 * 59.99972 * 19 18 17 21 21 F 1.39899 * 109.46882 * 180.02562 * 19 18 17 22 22 F 1.39905 * 109.46858 * 299.99851 * 19 18 17 23 23 C 1.33358 * 124.10607 * 19.10338 * 17 16 15 24 24 O 1.21277 * 118.24270 * 177.77486 * 23 17 16 25 25 H 1.08991 * 109.47417 * 296.04651 * 1 2 3 26 26 H 1.09002 * 109.46813 * 56.04944 * 1 2 3 27 27 H 1.09004 * 109.46702 * 176.04696 * 1 2 3 28 28 H 1.09003 * 109.47524 * 53.95540 * 3 2 1 29 29 H 1.09007 * 109.46554 * 173.95018 * 3 2 1 30 30 H 0.96995 * 120.00089 * 179.97438 * 7 6 4 31 31 H 1.08993 * 109.91371 * 71.33227 * 14 12 2 32 32 H 1.08998 * 109.58066 * 310.70882 * 14 12 2 33 33 H 1.09002 * 109.60400 * 307.57080 * 15 14 12 34 34 H 1.08997 * 109.60192 * 187.24937 * 15 14 12 35 35 H 1.09000 * 109.29553 * 69.47820 * 16 15 14 36 36 H 1.08998 * 109.29870 * 188.85112 * 16 15 14 37 37 H 1.08998 * 109.47017 * 210.00463 * 18 17 16 38 38 H 1.09005 * 109.47018 * 329.99995 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0741 1.5113 -2.0485 6 6 2.0276 3.3491 -1.5290 7 7 2.7135 4.0013 -0.6158 8 14 1.5828 4.1868 -3.1383 9 1 0.1055 4.2242 -3.2849 10 1 2.1160 5.5727 -3.1387 11 1 2.1735 3.4291 -4.2706 12 6 1.9954 -0.7659 1.1377 13 1 3.0794 -0.6578 1.1765 14 6 1.6393 -2.2471 0.9601 15 6 1.9458 -2.9762 2.2739 16 6 0.9750 -2.4849 3.3485 17 7 0.9641 -1.0283 3.3987 18 6 0.4455 -0.3869 4.6095 19 6 1.5891 -0.1733 5.6032 20 9 2.5643 0.6450 5.0231 21 9 1.0938 0.4386 6.7596 22 9 2.1548 -1.4090 5.9357 23 6 1.3960 -0.2428 2.4113 24 8 1.3000 0.9582 2.5497 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 1.5611 1.9274 0.8309 29 1 3.0798 1.3444 0.1083 30 1 2.9887 4.9171 -0.7781 31 1 2.2334 -2.6778 0.1542 32 1 0.5790 -2.3424 0.7264 33 1 2.9696 -2.7623 2.5806 34 1 1.8230 -4.0500 2.1335 35 1 -0.0280 -2.8451 3.1197 36 1 1.2826 -2.8765 4.3181 37 1 0.0048 0.5757 4.3504 38 1 -0.3143 -1.0245 5.0615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156651007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:24 Heat of formation + Delta-G solvation = -198.628035 kcal Electronic energy + Delta-G solvation = -25597.663807 eV Core-core repulsion = 21445.467464 eV Total energy + Delta-G solvation = -4152.196343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.14897 -48.67536 -48.64531 -41.97691 -38.10203 -37.61115 -35.07563 -33.93582 -30.47100 -30.06850 -28.91747 -27.05685 -25.13010 -24.50784 -23.01285 -22.42750 -19.97698 -19.58700 -19.28314 -18.85061 -18.47343 -17.71576 -17.49675 -16.90888 -16.45007 -15.72958 -15.63636 -15.52345 -15.34782 -15.19494 -15.07622 -14.88412 -14.79991 -14.73155 -14.35420 -13.98690 -13.92436 -13.51852 -13.27306 -13.20022 -12.85648 -12.72332 -12.60262 -12.41127 -12.23661 -12.12829 -11.91850 -11.60217 -11.18271 -10.99933 -10.59574 -10.00486 -8.97856 -8.15858 -6.27429 1.31541 1.39302 1.44198 1.51894 1.66410 1.87895 2.41133 2.78140 2.97529 3.14615 3.17728 3.23880 3.56559 3.81601 3.86528 4.06680 4.08952 4.29732 4.33583 4.45833 4.55491 4.65304 4.72867 4.86240 5.04018 5.08255 5.15175 5.26775 5.28869 5.39503 5.52575 5.65624 6.03624 6.20051 6.24343 6.54658 6.86890 7.10492 7.40701 8.94894 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.004873 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.246624 B = 5744.640844 C = 6618.553473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.515 5.515 3 C 0.198 3.802 4 C -0.525 4.525 5 H 0.066 0.934 6 C -0.005 4.005 7 N -0.938 5.938 8 Si 0.974 3.026 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.264 1.264 12 C 0.067 3.933 13 H 0.086 0.914 14 C -0.104 4.104 15 C -0.128 4.128 16 C 0.100 3.900 17 N -0.600 5.600 18 C 0.068 3.932 19 C 0.433 3.567 20 F -0.200 7.200 21 F -0.183 7.183 22 F -0.178 7.178 23 C 0.486 3.514 24 O -0.566 6.566 25 H 0.003 0.997 26 H 0.058 0.942 27 H 0.093 0.907 28 H -0.002 1.002 29 H -0.015 1.015 30 H 0.262 0.738 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 -19.197 11.644 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.237 5.237 3 C 0.072 3.928 4 C -0.563 4.563 5 H 0.084 0.916 6 C -0.202 4.202 7 N -0.578 5.578 8 Si 0.797 3.203 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.189 1.189 12 C -0.046 4.046 13 H 0.104 0.896 14 C -0.141 4.141 15 C -0.166 4.166 16 C -0.020 4.020 17 N -0.334 5.334 18 C -0.058 4.058 19 C 0.378 3.622 20 F -0.182 7.182 21 F -0.165 7.165 22 F -0.160 7.160 23 C 0.274 3.726 24 O -0.444 6.444 25 H 0.021 0.979 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.016 0.984 29 H 0.003 0.997 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.108 -18.651 11.270 22.631 hybrid contribution 0.307 1.803 0.446 1.883 sum -5.801 -16.848 11.716 21.325 Atomic orbital electron populations 1.22319 0.87478 1.01759 0.99655 1.62521 1.08481 1.16147 1.36578 1.19581 0.92719 0.84327 0.96141 1.21509 1.34875 0.97651 1.02305 0.91619 1.26016 0.95154 0.98143 1.00902 1.70159 1.39519 1.11721 1.36407 0.85382 0.78824 0.77065 0.78979 1.19122 1.21085 1.18870 1.22145 0.99751 0.97566 0.85093 0.89561 1.21803 1.03575 0.89253 0.99506 1.21915 0.99223 1.02724 0.92697 1.21990 1.02403 0.75641 1.01994 1.47666 1.62817 1.08901 1.14050 1.22739 0.92957 1.05157 0.84989 1.21574 0.85208 0.73748 0.81718 1.93224 1.66569 1.73970 1.84426 1.93174 1.87337 1.83708 1.52235 1.93152 1.86981 1.42614 1.93251 1.22124 0.77452 0.86755 0.86316 1.90793 1.55970 1.17468 1.80143 0.97868 0.92344 0.88860 0.98394 0.99711 0.92965 0.89098 0.89784 0.91735 0.85315 0.88203 0.88155 0.87343 0.81185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 8.76 127.69 1.12 2.52 16 2 N -0.51 -22.79 4.70 -906.25 -4.26 -27.05 16 3 C 0.20 11.49 4.16 85.56 0.36 11.85 16 4 C -0.53 -31.49 8.46 25.60 0.22 -31.27 16 5 H 0.07 3.76 7.12 -2.91 -0.02 3.74 16 6 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 7 N -0.94 -60.94 13.29 21.45 0.28 -60.66 16 8 Si 0.97 46.38 29.54 68.60 2.03 48.41 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.07 2.37 2.48 44.13 0.11 2.48 16 13 H 0.09 3.35 7.92 -2.39 -0.02 3.33 16 14 C -0.10 -2.25 5.48 30.84 0.17 -2.08 16 15 C -0.13 -1.78 6.01 30.68 0.18 -1.60 16 16 C 0.10 1.36 6.18 86.50 0.53 1.90 16 17 N -0.60 -14.60 2.75 -826.63 -2.27 -16.87 16 18 C 0.07 1.46 5.32 86.38 0.46 1.92 16 19 C 0.43 10.96 3.29 71.98 0.24 11.20 16 20 F -0.20 -7.13 16.08 44.97 0.72 -6.41 16 21 F -0.18 -4.49 17.32 44.97 0.78 -3.71 16 22 F -0.18 -3.91 15.89 44.97 0.71 -3.19 16 23 C 0.49 17.50 5.28 87.71 0.46 17.96 16 24 O -0.57 -27.13 11.62 -3.02 -0.04 -27.16 16 25 H 0.00 0.12 6.44 -2.39 -0.02 0.10 16 26 H 0.06 2.50 6.76 -2.39 -0.02 2.48 16 27 H 0.09 2.73 6.28 -2.38 -0.01 2.71 16 28 H 0.00 -0.11 5.73 -2.39 -0.01 -0.12 16 29 H -0.02 -0.98 7.93 -2.38 -0.02 -1.00 16 30 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 1.66 6.14 -2.39 -0.01 1.64 16 33 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 34 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 1.01 6.88 -2.39 -0.02 0.99 16 37 H 0.11 2.91 7.13 -2.39 -0.02 2.89 16 38 H 0.17 1.82 8.02 -2.38 -0.02 1.80 16 Total: -1.00 -81.85 310.59 3.36 -78.49 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 1.09 Total: 3.10 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 4.31 Total: 15.04 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -6.24 Total: -104.58 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.16 kcal Atomic # 9 Polarization: -15.52 SS G_CDS: 2.22 Total: -13.30 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -81.85 3.36 -78.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156651007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.136 kcal (2) G-P(sol) polarization free energy of solvation -81.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds