Wall clock time and date at job start Tue Mar 31 2020 07:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.35995 * 117.00081 * 179.97438 * 3 2 1 5 5 C 1.38558 * 120.07405 * 359.96402 * 4 3 2 6 6 C 1.38247 * 119.99917 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.14468 * 359.97438 * 6 5 4 8 8 C 1.38241 * 120.14765 * 0.02562 * 7 6 5 9 9 C 1.38563 * 119.99765 * 359.97368 * 8 7 6 10 10 O 1.35999 * 120.07024 * 180.02562 * 9 8 7 11 11 C 1.42897 * 116.99765 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.46980 * 179.97438 * 11 10 9 13 13 O 1.20831 * 119.99990 * 0.02562 * 12 11 10 14 14 O 1.34226 * 120.00092 * 179.97438 * 12 11 10 15 15 C 1.45207 * 117.00061 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47178 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.46935 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99965 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99906 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00217 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47206 * 90.00333 * 21 19 17 23 23 H 1.48501 * 109.47108 * 210.00259 * 21 19 17 24 24 H 1.48500 * 109.46817 * 330.00067 * 21 19 17 25 25 H 1.09001 * 109.47024 * 59.99715 * 1 2 3 26 26 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46921 * 299.99907 * 1 2 3 28 28 H 1.09003 * 109.46921 * 240.00093 * 2 1 3 29 29 H 1.09001 * 109.47024 * 120.00285 * 2 1 3 30 30 H 1.07995 * 120.00001 * 0.03822 * 5 4 3 31 31 H 1.07998 * 119.92703 * 180.27362 * 6 5 4 32 32 H 1.08004 * 119.92416 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.99988 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47596 * 299.99815 * 11 10 9 35 35 H 1.09004 * 109.47087 * 60.00573 * 11 10 9 36 36 H 1.08998 * 109.46998 * 300.00167 * 15 14 12 37 37 H 1.08997 * 109.47194 * 59.99904 * 15 14 12 38 38 H 1.08998 * 109.47025 * 299.99823 * 16 15 14 39 39 H 1.09002 * 109.46760 * 59.99997 * 16 15 14 40 40 H 0.97000 * 120.00319 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 0.0005 5 6 4.2000 0.4275 0.0018 6 6 5.5703 0.6104 0.0029 7 6 6.1004 1.8873 0.0022 8 6 5.2625 2.9868 0.0009 9 6 3.8881 2.8105 -0.0002 10 8 3.0625 3.8912 -0.0020 11 6 3.6804 5.1796 -0.0020 12 6 2.6165 6.2470 -0.0047 13 8 1.4488 5.9361 -0.0060 14 8 2.9659 7.5429 -0.0047 15 6 1.8883 8.5163 -0.0069 16 6 2.4768 9.9286 -0.0072 17 6 1.3585 10.9387 -0.0100 18 1 0.3308 10.6066 -0.0110 19 6 1.6472 12.2869 -0.0102 20 7 2.8986 12.6913 -0.0085 21 14 0.2610 13.5390 -0.0144 22 1 -0.1097 13.8718 1.3844 23 1 0.7081 14.7701 -0.7143 24 1 -0.9173 12.9705 -0.7169 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7885 -0.5709 0.0018 31 1 6.2282 -0.2461 -0.0006 32 1 7.1715 2.0260 0.0035 33 1 5.6791 3.9832 -0.0001 34 1 4.2996 5.2857 0.8886 35 1 4.3019 5.2845 -0.8914 36 1 1.2757 8.3781 -0.8977 37 1 1.2729 8.3789 0.8822 38 1 3.0897 10.0671 0.8835 39 1 3.0920 10.0657 -0.8965 40 1 3.1018 13.6398 -0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194453647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:33 Heat of formation + Delta-G solvation = -141.544029 kcal Electronic energy + Delta-G solvation = -22404.114222 eV Core-core repulsion = 18763.957217 eV Total energy + Delta-G solvation = -3640.157005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86501 -39.96771 -38.65661 -37.14780 -36.01791 -33.37692 -32.21357 -30.75233 -30.50685 -29.80965 -28.31668 -25.04151 -24.29697 -22.56557 -22.16352 -21.10637 -20.47840 -19.06470 -17.69959 -17.24834 -16.82352 -16.63508 -16.28977 -16.04766 -15.56954 -15.29535 -15.12296 -14.92473 -14.51958 -13.81525 -13.67606 -13.14350 -13.09121 -12.84652 -12.51141 -12.37283 -12.27897 -12.19729 -11.57726 -11.37539 -11.27530 -11.18973 -11.07200 -11.00969 -10.77640 -10.69910 -10.20694 -9.68849 -9.64845 -9.31896 -9.03569 -8.45846 -8.06090 -6.11976 -4.16420 0.99847 1.17707 2.30875 2.46081 2.94638 3.28270 3.34163 3.38078 3.46070 3.61776 4.37619 4.48642 4.60126 4.63904 4.65764 4.79412 4.87318 4.92473 4.93725 5.06739 5.09416 5.12582 5.24770 5.29885 5.43805 5.53589 5.79925 5.90399 5.98659 6.05058 6.06257 6.21044 6.38694 6.59728 6.81507 6.89846 7.34868 7.53393 7.59354 7.84718 8.12865 8.22479 8.89033 9.48145 10.99534 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.002485 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.890451 B =11264.434737 C =12317.971952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.301 6.301 4 C 0.106 3.894 5 C -0.176 4.176 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.174 4.174 9 C 0.103 3.897 10 O -0.282 6.282 11 C 0.066 3.934 12 C 0.457 3.543 13 O -0.492 6.492 14 O -0.354 6.354 15 C 0.077 3.923 16 C 0.025 3.975 17 C -0.527 4.527 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -27.323 0.024 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.215 6.215 4 C 0.060 3.940 5 C -0.194 4.194 6 C -0.137 4.137 7 C -0.135 4.135 8 C -0.192 4.192 9 C 0.057 3.943 10 O -0.196 6.196 11 C -0.011 4.011 12 C 0.298 3.702 13 O -0.379 6.379 14 O -0.271 6.271 15 C 0.005 3.995 16 C -0.012 4.012 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.020 -27.048 0.017 27.510 hybrid contribution -0.467 0.610 0.008 0.768 sum 4.553 -26.438 0.026 26.827 Atomic orbital electron populations 1.21768 0.92598 1.02628 1.04006 1.22794 0.96193 0.82109 1.01027 1.86262 1.17857 1.28747 1.88627 1.18228 0.83401 0.90966 1.01397 1.21063 0.94101 0.97305 1.06971 1.20864 0.94170 0.97400 1.01238 1.20873 0.99792 0.91809 1.01020 1.21185 0.91002 1.00855 1.06205 1.18286 0.89032 0.85040 1.01930 1.86209 1.32929 1.11523 1.88913 1.21953 0.93527 0.80446 1.05132 1.22698 0.89078 0.84193 0.74244 1.90690 1.20240 1.83119 1.43889 1.86479 1.42931 1.14754 1.82906 1.23736 0.87141 0.87412 1.01258 1.19188 0.97314 0.85768 0.98966 1.20975 0.92606 0.90662 1.52254 0.92194 1.24983 0.95820 0.98522 0.94821 1.69971 1.17506 1.15625 1.49755 0.86457 0.81963 0.80547 0.78264 1.20457 1.21036 1.19698 0.91320 0.90472 0.91316 0.92186 0.92183 0.84841 0.85595 0.85380 0.84308 0.87792 0.87803 0.92056 0.92056 0.95261 0.95250 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.46 5.46 37.16 0.20 0.66 16 3 O -0.30 -3.96 9.92 -34.23 -0.34 -4.30 16 4 C 0.11 1.30 6.70 -39.12 -0.26 1.04 16 5 C -0.18 -1.62 9.04 -39.46 -0.36 -1.97 16 6 C -0.12 -0.96 10.04 -39.57 -0.40 -1.35 16 7 C -0.12 -0.98 10.04 -39.57 -0.40 -1.38 16 8 C -0.17 -1.74 9.04 -39.46 -0.36 -2.09 16 9 C 0.10 1.33 6.70 -39.12 -0.26 1.07 16 10 O -0.28 -4.35 9.45 -47.38 -0.45 -4.80 16 11 C 0.07 0.87 5.33 36.01 0.19 1.06 16 12 C 0.46 8.27 8.03 36.01 0.29 8.56 16 13 O -0.49 -10.60 16.25 -25.48 -0.41 -11.02 16 14 O -0.35 -7.01 10.22 -39.25 -0.40 -7.42 16 15 C 0.08 1.72 5.41 37.16 0.20 1.92 16 16 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 17 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 18 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 21 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.41 7.67 -51.93 -0.40 0.02 16 29 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 30 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 31 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 34 H 0.10 1.08 7.66 -51.93 -0.40 0.68 16 35 H 0.10 1.08 7.66 -51.93 -0.40 0.68 16 36 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 37 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -34.10 348.37 -7.56 -41.66 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -5.60 Total: -3.95 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.33 Total: -6.28 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -1.60 Total: -27.53 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.10 -7.56 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194453647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.879 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds