Wall clock time and date at job start Tue Mar 31 2020 07:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.35995 * 117.00081 * 179.97438 * 3 2 1 5 5 C 1.38558 * 120.07405 * 359.96402 * 4 3 2 6 6 C 1.38247 * 119.99917 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.14468 * 359.97438 * 6 5 4 8 8 C 1.38241 * 120.14765 * 0.02562 * 7 6 5 9 9 C 1.38563 * 119.99765 * 359.97368 * 8 7 6 10 10 O 1.35999 * 120.07024 * 180.02562 * 9 8 7 11 11 C 1.42897 * 116.99765 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.46980 * 179.97438 * 11 10 9 13 13 O 1.20831 * 119.99990 * 0.02562 * 12 11 10 14 14 O 1.34226 * 120.00092 * 179.97438 * 12 11 10 15 15 C 1.45207 * 117.00061 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47178 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.46935 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99965 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99906 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00217 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47206 * 90.00333 * 21 19 17 23 23 H 1.48501 * 109.47108 * 210.00259 * 21 19 17 24 24 H 1.48500 * 109.46817 * 330.00067 * 21 19 17 25 25 H 1.09001 * 109.47024 * 59.99715 * 1 2 3 26 26 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46921 * 299.99907 * 1 2 3 28 28 H 1.09003 * 109.46921 * 240.00093 * 2 1 3 29 29 H 1.09001 * 109.47024 * 120.00285 * 2 1 3 30 30 H 1.07995 * 120.00001 * 0.03822 * 5 4 3 31 31 H 1.07998 * 119.92703 * 180.27362 * 6 5 4 32 32 H 1.08004 * 119.92416 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.99988 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47596 * 299.99815 * 11 10 9 35 35 H 1.09004 * 109.47087 * 60.00573 * 11 10 9 36 36 H 1.08998 * 109.46998 * 300.00167 * 15 14 12 37 37 H 1.08997 * 109.47194 * 59.99904 * 15 14 12 38 38 H 1.08998 * 109.47025 * 299.99823 * 16 15 14 39 39 H 1.09002 * 109.46760 * 59.99997 * 16 15 14 40 40 H 0.97000 * 120.00319 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 0.0005 5 6 4.2000 0.4275 0.0018 6 6 5.5703 0.6104 0.0029 7 6 6.1004 1.8873 0.0022 8 6 5.2625 2.9868 0.0009 9 6 3.8881 2.8105 -0.0002 10 8 3.0625 3.8912 -0.0020 11 6 3.6804 5.1796 -0.0020 12 6 2.6165 6.2470 -0.0047 13 8 1.4488 5.9361 -0.0060 14 8 2.9659 7.5429 -0.0047 15 6 1.8883 8.5163 -0.0069 16 6 2.4768 9.9286 -0.0072 17 6 1.3585 10.9387 -0.0100 18 1 0.3308 10.6066 -0.0110 19 6 1.6472 12.2869 -0.0102 20 7 2.8986 12.6913 -0.0085 21 14 0.2610 13.5390 -0.0144 22 1 -0.1097 13.8718 1.3844 23 1 0.7081 14.7701 -0.7143 24 1 -0.9173 12.9705 -0.7169 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7885 -0.5709 0.0018 31 1 6.2282 -0.2461 -0.0006 32 1 7.1715 2.0260 0.0035 33 1 5.6791 3.9832 -0.0001 34 1 4.2996 5.2857 0.8886 35 1 4.3019 5.2845 -0.8914 36 1 1.2757 8.3781 -0.8977 37 1 1.2729 8.3789 0.8822 38 1 3.0897 10.0671 0.8835 39 1 3.0920 10.0657 -0.8965 40 1 3.1018 13.6398 -0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194453647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:32 Heat of formation + Delta-G solvation = -161.298978 kcal Electronic energy + Delta-G solvation = -22404.970861 eV Core-core repulsion = 18763.957217 eV Total energy + Delta-G solvation = -3641.013644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.85984 -41.27162 -39.61519 -38.03679 -37.54232 -35.47921 -32.89609 -32.49848 -31.35758 -30.81841 -29.35366 -26.97235 -25.06159 -23.49308 -23.24080 -22.68234 -21.80942 -19.94720 -18.95033 -18.45447 -18.13095 -18.09316 -17.63916 -17.17084 -16.77720 -16.50780 -16.42975 -15.75714 -15.66589 -15.07147 -14.82546 -14.39634 -14.22220 -14.18830 -13.69997 -13.39336 -13.23882 -13.05489 -13.01048 -12.81452 -12.63447 -12.60889 -12.33142 -12.15966 -11.94644 -11.84988 -11.65622 -11.55683 -11.54226 -11.36128 -10.62288 -9.73994 -8.85958 -8.28399 -6.41471 0.29952 0.44631 1.00811 1.07389 1.41472 1.42400 1.54177 2.27263 2.35560 2.52455 2.75953 3.06151 3.48711 3.84088 3.89125 3.97709 4.01745 4.04330 4.10052 4.18633 4.21299 4.21484 4.32430 4.42297 4.49629 4.64660 4.67766 4.85658 4.90752 5.16294 5.18344 5.24117 5.35131 5.44791 5.45944 5.54463 5.71284 5.74899 6.00536 6.05289 6.56757 6.62617 6.71912 7.28238 8.84156 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.002485 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.890451 B =11264.434737 C =12317.971952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.339 6.339 4 C 0.078 3.922 5 C -0.175 4.175 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.174 4.174 9 C 0.065 3.935 10 O -0.318 6.318 11 C 0.074 3.926 12 C 0.456 3.544 13 O -0.532 6.532 14 O -0.355 6.355 15 C 0.090 3.910 16 C 0.032 3.968 17 C -0.552 4.552 18 H 0.063 0.937 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.973 3.027 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.265 1.265 25 H 0.054 0.946 26 H 0.106 0.894 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -28.842 0.035 29.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.254 6.254 4 C 0.032 3.968 5 C -0.193 4.193 6 C -0.131 4.131 7 C -0.135 4.135 8 C -0.192 4.192 9 C 0.021 3.979 10 O -0.233 6.233 11 C -0.001 4.001 12 C 0.300 3.700 13 O -0.421 6.421 14 O -0.271 6.271 15 C 0.017 3.983 16 C -0.005 4.005 17 C -0.590 4.590 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.564 5.564 21 Si 0.796 3.204 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.189 1.189 25 H 0.073 0.927 26 H 0.125 0.875 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.156 -28.597 0.030 29.252 hybrid contribution -0.720 0.932 0.005 1.178 sum 5.436 -27.665 0.035 28.194 Atomic orbital electron populations 1.21817 0.92404 1.04113 1.02601 1.23060 0.96443 0.80793 1.02510 1.86211 1.18824 1.31270 1.89104 1.18654 0.83564 0.91815 1.02721 1.21385 0.94491 0.97450 1.05999 1.21326 0.94038 0.98539 0.99164 1.21297 1.01124 0.91437 0.99672 1.21475 0.89913 1.02496 1.05365 1.18695 0.90097 0.84497 1.04615 1.86131 1.34789 1.12454 1.89929 1.22087 0.91433 0.78534 1.08048 1.23724 0.89900 0.83990 0.72401 1.90670 1.22314 1.83335 1.45794 1.86461 1.41770 1.15664 1.83230 1.23259 0.87284 0.86539 1.01169 1.18991 0.96560 0.87955 0.97035 1.21365 0.93247 0.91710 1.52656 0.91841 1.25939 0.98526 1.00659 0.94034 1.70082 1.19657 1.16405 1.50287 0.85331 0.78641 0.77689 0.78694 1.19515 1.20255 1.18901 0.92705 0.87501 0.92696 0.90585 0.90580 0.82623 0.82392 0.82471 0.82521 0.84633 0.84645 0.92142 0.92115 0.97136 0.97130 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.05 0.76 5.46 71.98 0.39 1.16 16 3 O -0.34 -9.18 9.92 -79.63 -0.79 -9.97 16 4 C 0.08 1.90 6.70 22.57 0.15 2.05 16 5 C -0.17 -2.87 9.04 22.35 0.20 -2.66 16 6 C -0.11 -1.44 10.04 22.28 0.22 -1.21 16 7 C -0.12 -1.58 10.04 22.27 0.22 -1.36 16 8 C -0.17 -3.11 9.04 22.35 0.20 -2.91 16 9 C 0.07 1.67 6.70 22.57 0.15 1.82 16 10 O -0.32 -9.94 9.45 -67.11 -0.63 -10.58 16 11 C 0.07 1.90 5.33 71.24 0.38 2.28 16 12 C 0.46 16.68 8.03 71.24 0.57 17.26 16 13 O -0.53 -23.62 16.25 28.38 0.46 -23.16 16 14 O -0.35 -14.20 10.22 -51.38 -0.53 -14.73 16 15 C 0.09 4.14 5.41 71.98 0.39 4.53 16 16 C 0.03 1.71 5.35 29.85 0.16 1.87 16 17 C -0.55 -31.51 9.11 25.60 0.23 -31.27 16 18 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 21 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 0.96 7.67 -2.39 -0.02 0.94 16 29 H 0.08 0.96 7.66 -2.39 -0.02 0.94 16 30 H 0.16 1.69 6.30 -2.91 -0.02 1.67 16 31 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.16 2.05 6.30 -2.91 -0.02 2.03 16 34 H 0.14 2.56 7.66 -2.39 -0.02 2.55 16 35 H 0.14 2.56 7.66 -2.39 -0.02 2.54 16 36 H 0.06 2.76 8.13 -2.39 -0.02 2.74 16 37 H 0.06 2.77 8.13 -2.39 -0.02 2.75 16 38 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -76.42 348.37 6.34 -70.08 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.03 Total: 6.59 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 4.48 Total: -9.13 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.28 Total: -54.94 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -1.49 Total: -58.44 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -76.42 6.34 -70.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194453647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.221 kcal (2) G-P(sol) polarization free energy of solvation -76.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds