Wall clock time and date at job start Tue Mar 31 2020 07:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47340 * 2 1 4 4 N 1.46904 * 109.47162 * 119.99839 * 2 1 3 5 5 C 1.46896 * 111.00016 * 274.99941 * 4 2 1 6 6 C 1.53002 * 109.47181 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.47070 * 305.00230 * 6 5 4 8 8 C 1.47201 * 109.46938 * 65.00082 * 6 5 4 9 9 N 4.90938 * 135.91301 * 112.22786 * 2 1 3 10 10 C 1.53000 * 109.47233 * 184.99855 * 6 5 4 11 11 C 1.50698 * 109.46984 * 175.00062 * 10 6 5 12 12 H 1.08008 * 120.00253 * 0.02562 * 11 10 6 13 13 C 1.37881 * 120.00032 * 180.02562 * 11 10 6 14 14 N 1.31517 * 119.99980 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99806 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46754 * 90.00399 * 15 13 11 17 17 H 1.48503 * 109.46996 * 209.99720 * 15 13 11 18 18 H 1.48501 * 109.47356 * 330.00401 * 15 13 11 19 19 C 1.50696 * 109.47548 * 240.00010 * 2 1 3 20 20 C 1.38418 * 120.02254 * 284.72972 * 19 2 1 21 21 F 1.35102 * 120.01469 * 359.97438 * 20 19 2 22 22 C 1.38474 * 119.97200 * 179.74414 * 20 19 2 23 23 C 1.38202 * 120.02755 * 0.52576 * 22 20 19 24 24 C 1.38205 * 120.05098 * 359.74444 * 23 22 20 25 25 C 1.38415 * 120.02752 * 104.99551 * 19 2 1 26 26 F 1.35102 * 120.01458 * 0.02562 * 25 19 2 27 27 H 1.08998 * 109.47082 * 59.99705 * 1 2 3 28 28 H 1.08997 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46757 * 300.00342 * 1 2 3 30 30 H 1.00903 * 111.00052 * 151.04487 * 4 2 1 31 31 H 1.09008 * 109.47165 * 59.99956 * 5 4 2 32 32 H 1.08997 * 109.47437 * 299.99850 * 5 4 2 33 33 H 1.08990 * 109.47170 * 295.00238 * 10 6 5 34 34 H 1.09001 * 109.46952 * 55.00315 * 10 6 5 35 35 H 0.97004 * 119.99775 * 180.02562 * 14 13 11 36 36 H 1.08002 * 119.98638 * 180.26949 * 22 20 19 37 37 H 1.08007 * 119.97752 * 179.72468 * 23 22 20 38 38 H 1.07999 * 119.99421 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5951 -0.5331 3.5745 7 1 1.9691 -1.4080 3.7501 8 6 3.9839 -0.9621 3.3420 9 7 5.0563 -1.2921 3.1619 10 6 2.5428 0.3851 4.7972 11 6 2.9306 -0.3941 6.0275 12 1 3.1890 -1.4396 5.9454 13 6 2.9557 0.2277 7.2579 14 7 3.2946 -0.4522 8.3314 15 14 2.5095 2.0360 7.3997 16 1 1.0501 2.1684 7.6399 17 1 3.2545 2.6423 8.5323 18 1 2.8692 2.7350 6.1398 19 6 2.0324 -0.7104 -1.2304 20 6 1.9760 -2.0914 -1.3043 21 9 1.4710 -2.8033 -0.2731 22 6 2.4331 -2.7428 -2.4376 23 6 2.9554 -2.0152 -3.4901 24 6 3.0174 -0.6366 -3.4152 25 6 2.5557 0.0173 -2.2852 26 9 2.6168 1.3649 -2.2120 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 2.9173 -1.1205 1.0288 31 1 1.0870 0.6164 2.5525 32 1 2.7589 1.0462 2.1182 33 1 3.2364 1.2143 4.6587 34 1 1.5314 0.7735 4.9170 35 1 3.3118 -0.0149 9.1971 36 1 2.3852 -3.8201 -2.4973 37 1 3.3158 -2.5244 -4.3718 38 1 3.4254 -0.0690 -4.2384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264894999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:09 Heat of formation + Delta-G solvation = -45.693867 kcal Electronic energy + Delta-G solvation = -22973.512926 eV Core-core repulsion = 19258.717531 eV Total energy + Delta-G solvation = -3714.795395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.30711 -48.99045 -39.39902 -37.68593 -35.87422 -33.90524 -32.48228 -30.87248 -30.57372 -29.21342 -26.78862 -24.26549 -23.28354 -22.52809 -21.58723 -20.71983 -18.37569 -17.55491 -17.04362 -16.83857 -16.47690 -16.24702 -15.78456 -15.49241 -15.29966 -14.86513 -14.57719 -14.29760 -13.96065 -13.40306 -13.28254 -12.98525 -12.84698 -12.67012 -12.39980 -12.28915 -12.21205 -12.13062 -11.94548 -11.76490 -11.38712 -11.22078 -10.92022 -10.82142 -10.41835 -9.95099 -9.78056 -9.32630 -9.19765 -9.03527 -8.61011 -8.47129 -6.09816 -4.10399 0.62113 0.67247 3.02267 3.26489 3.35258 3.36155 3.52584 3.56987 3.61607 3.95740 4.12767 4.17112 4.38980 4.46164 4.53191 4.70394 4.80531 5.09638 5.13714 5.24737 5.41052 5.41631 5.53655 5.57923 5.59805 5.64395 5.72213 5.81337 5.82643 5.98223 6.17439 6.19666 6.36565 6.45323 6.92794 6.94990 7.14212 7.28976 7.64304 8.34106 8.43339 8.93872 9.49958 11.03310 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.024241 B = 0.003562 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.775950 B = 7858.615324 C = 8191.553664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.125 3.875 3 H 0.062 0.938 4 N -0.678 5.678 5 C 0.064 3.936 6 C 0.018 3.982 7 H 0.118 0.882 8 C 0.238 3.762 9 N -0.468 5.468 10 C -0.004 4.004 11 C -0.528 4.528 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.878 3.122 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.167 4.167 20 C 0.154 3.846 21 F -0.109 7.109 22 C -0.170 4.170 23 C -0.062 4.062 24 C -0.170 4.170 25 C 0.134 3.866 26 F -0.129 7.129 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.341 0.659 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 0.320 -25.708 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 H 0.080 0.920 4 N -0.310 5.310 5 C -0.065 4.065 6 C -0.004 4.004 7 H 0.136 0.864 8 C -0.079 4.079 9 N -0.145 5.145 10 C -0.043 4.043 11 C -0.565 4.565 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.705 3.295 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.169 4.169 20 C 0.133 3.867 21 F -0.087 7.087 22 C -0.189 4.189 23 C -0.080 4.080 24 C -0.189 4.189 25 C 0.114 3.886 26 F -0.108 7.108 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.159 0.841 31 H 0.112 0.888 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.189 -0.383 -25.552 26.076 hybrid contribution 0.205 1.666 0.360 1.717 sum -4.984 1.283 -25.192 25.712 Atomic orbital electron populations 1.21783 0.92776 1.03030 1.01750 1.20342 0.96811 0.95590 0.85693 0.92008 1.60717 1.33605 1.33050 1.03598 1.22188 1.01842 0.93411 0.89098 1.19061 0.84200 1.01346 0.95803 0.86448 1.29182 0.95022 0.92267 0.91426 1.81063 1.12486 1.10213 1.10727 1.19628 0.97986 0.94896 0.91767 1.21031 1.46942 0.98469 0.90099 0.90768 1.24994 0.94446 0.97977 0.95714 1.69910 1.47979 1.36661 0.98960 0.86815 0.78886 0.85727 0.78114 1.19966 1.21339 1.18915 1.20094 1.05447 0.93230 0.98116 1.17199 0.95888 0.88106 0.85463 1.91630 1.83807 1.77219 1.56006 1.21298 1.02778 1.01651 0.93218 1.20852 0.96224 0.92736 0.98219 1.21171 1.04179 0.95506 0.97995 1.17238 0.99479 0.77166 0.94711 1.91525 1.94059 1.28768 1.96431 0.92707 0.91460 0.91385 0.84086 0.88787 0.94540 0.95855 0.94663 0.92572 0.83920 0.84000 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.35 37.16 0.35 -1.06 16 2 C 0.13 1.46 2.61 -68.87 -0.18 1.28 16 3 H 0.06 0.73 6.93 -51.93 -0.36 0.37 16 4 N -0.68 -9.09 5.01 -107.95 -0.54 -9.63 16 5 C 0.06 0.92 4.92 -3.83 -0.02 0.90 16 6 C 0.02 0.32 2.42 -93.40 -0.23 0.09 16 7 H 0.12 2.08 8.14 -51.93 -0.42 1.65 16 8 C 0.24 4.86 12.98 -20.74 -0.27 4.60 16 9 N -0.47 -10.41 18.54 42.17 0.78 -9.63 16 10 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 11 C -0.53 -14.33 9.15 -34.44 -0.32 -14.65 16 12 H 0.07 2.22 7.84 -52.48 -0.41 1.81 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 15 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 19 C -0.17 -1.84 4.68 -104.49 -0.49 -2.33 16 20 C 0.15 1.65 6.79 -39.43 -0.27 1.39 16 21 F -0.11 -1.37 15.28 2.25 0.03 -1.33 16 22 C -0.17 -1.40 10.02 -39.51 -0.40 -1.80 16 23 C -0.06 -0.42 10.04 -39.61 -0.40 -0.82 16 24 C -0.17 -1.32 10.03 -39.50 -0.40 -1.72 16 25 C 0.13 1.37 7.25 -39.43 -0.29 1.08 16 26 F -0.13 -1.43 16.27 2.25 0.04 -1.39 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 29 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 30 H 0.34 4.94 7.12 -39.29 -0.28 4.66 16 31 H 0.09 1.19 7.44 -51.92 -0.39 0.81 16 32 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 33 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 34 H 0.04 0.70 7.57 -51.93 -0.39 0.31 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -31.53 332.52 -6.35 -37.88 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.69 Total: 0.77 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.09 Total: -11.31 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 1.01 Total: -45.74 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.07 Total: -2.73 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.53 -6.35 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264894999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.815 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds