Wall clock time and date at job start Tue Mar 31 2020 07:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47340 * 2 1 4 4 N 1.46904 * 109.47162 * 119.99839 * 2 1 3 5 5 C 1.46896 * 111.00016 * 274.99941 * 4 2 1 6 6 C 1.53002 * 109.47181 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.47070 * 305.00230 * 6 5 4 8 8 C 1.47201 * 109.46938 * 65.00082 * 6 5 4 9 9 N 4.90938 * 135.91301 * 112.22786 * 2 1 3 10 10 C 1.53000 * 109.47233 * 184.99855 * 6 5 4 11 11 C 1.50698 * 109.46984 * 175.00062 * 10 6 5 12 12 H 1.08008 * 120.00253 * 0.02562 * 11 10 6 13 13 C 1.37881 * 120.00032 * 180.02562 * 11 10 6 14 14 N 1.31517 * 119.99980 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99806 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46754 * 90.00399 * 15 13 11 17 17 H 1.48503 * 109.46996 * 209.99720 * 15 13 11 18 18 H 1.48501 * 109.47356 * 330.00401 * 15 13 11 19 19 C 1.50696 * 109.47548 * 240.00010 * 2 1 3 20 20 C 1.38418 * 120.02254 * 284.72972 * 19 2 1 21 21 F 1.35102 * 120.01469 * 359.97438 * 20 19 2 22 22 C 1.38474 * 119.97200 * 179.74414 * 20 19 2 23 23 C 1.38202 * 120.02755 * 0.52576 * 22 20 19 24 24 C 1.38205 * 120.05098 * 359.74444 * 23 22 20 25 25 C 1.38415 * 120.02752 * 104.99551 * 19 2 1 26 26 F 1.35102 * 120.01458 * 0.02562 * 25 19 2 27 27 H 1.08998 * 109.47082 * 59.99705 * 1 2 3 28 28 H 1.08997 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46757 * 300.00342 * 1 2 3 30 30 H 1.00903 * 111.00052 * 151.04487 * 4 2 1 31 31 H 1.09008 * 109.47165 * 59.99956 * 5 4 2 32 32 H 1.08997 * 109.47437 * 299.99850 * 5 4 2 33 33 H 1.08990 * 109.47170 * 295.00238 * 10 6 5 34 34 H 1.09001 * 109.46952 * 55.00315 * 10 6 5 35 35 H 0.97004 * 119.99775 * 180.02562 * 14 13 11 36 36 H 1.08002 * 119.98638 * 180.26949 * 22 20 19 37 37 H 1.08007 * 119.97752 * 179.72468 * 23 22 20 38 38 H 1.07999 * 119.99421 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5951 -0.5331 3.5745 7 1 1.9691 -1.4080 3.7501 8 6 3.9839 -0.9621 3.3420 9 7 5.0563 -1.2921 3.1619 10 6 2.5428 0.3851 4.7972 11 6 2.9306 -0.3941 6.0275 12 1 3.1890 -1.4396 5.9454 13 6 2.9557 0.2277 7.2579 14 7 3.2946 -0.4522 8.3314 15 14 2.5095 2.0360 7.3997 16 1 1.0501 2.1684 7.6399 17 1 3.2545 2.6423 8.5323 18 1 2.8692 2.7350 6.1398 19 6 2.0324 -0.7104 -1.2304 20 6 1.9760 -2.0914 -1.3043 21 9 1.4710 -2.8033 -0.2731 22 6 2.4331 -2.7428 -2.4376 23 6 2.9554 -2.0152 -3.4901 24 6 3.0174 -0.6366 -3.4152 25 6 2.5557 0.0173 -2.2852 26 9 2.6168 1.3649 -2.2120 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 2.9173 -1.1205 1.0288 31 1 1.0870 0.6164 2.5525 32 1 2.7589 1.0462 2.1182 33 1 3.2364 1.2143 4.6587 34 1 1.5314 0.7735 4.9170 35 1 3.3118 -0.0149 9.1971 36 1 2.3852 -3.8201 -2.4973 37 1 3.3158 -2.5244 -4.3718 38 1 3.4254 -0.0690 -4.2384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264894999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:09 Heat of formation + Delta-G solvation = -64.559808 kcal Electronic energy + Delta-G solvation = -22974.331014 eV Core-core repulsion = 19258.717531 eV Total energy + Delta-G solvation = -3715.613484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.06790 -49.82247 -40.14545 -38.94049 -37.15131 -35.60805 -34.18633 -32.12432 -31.23727 -30.12066 -28.38541 -25.25457 -24.11737 -23.52472 -23.34804 -21.61829 -19.14359 -18.93777 -18.46322 -18.16822 -17.52286 -17.04749 -16.54880 -16.50426 -16.26316 -16.10871 -15.57331 -15.35129 -15.23405 -14.82799 -14.71739 -14.37793 -14.11319 -13.70397 -13.68399 -13.59482 -13.21792 -13.04692 -12.90171 -12.85139 -12.76684 -12.53243 -12.41478 -12.14105 -11.80864 -11.67994 -11.52026 -11.30653 -10.73566 -9.91016 -9.72313 -9.50616 -8.25332 -6.31129 -0.04687 0.00001 1.42218 1.44867 1.55192 1.88543 1.90390 2.37481 2.40488 2.90046 3.00202 3.09881 3.19101 3.37899 3.46239 3.79917 3.88970 4.04025 4.22435 4.28352 4.31411 4.42859 4.55167 4.74043 4.78717 4.83269 4.86084 4.94131 4.99654 5.05100 5.09281 5.21398 5.21826 5.34992 5.44062 5.62006 5.78900 5.95385 6.17305 6.25387 6.70262 6.78115 7.33223 8.91700 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.024241 B = 0.003562 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.775950 B = 7858.615324 C = 8191.553664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.125 3.875 3 H 0.060 0.940 4 N -0.681 5.681 5 C 0.075 3.925 6 C 0.025 3.975 7 H 0.120 0.880 8 C 0.247 3.753 9 N -0.505 5.505 10 C -0.001 4.001 11 C -0.532 4.532 12 H 0.028 0.972 13 C 0.003 3.997 14 N -0.954 5.954 15 Si 0.950 3.050 16 H -0.256 1.256 17 H -0.295 1.295 18 H -0.238 1.238 19 C -0.181 4.181 20 C 0.128 3.872 21 F -0.127 7.127 22 C -0.169 4.169 23 C -0.051 4.051 24 C -0.163 4.163 25 C 0.115 3.885 26 F -0.139 7.139 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.332 0.668 31 H 0.118 0.882 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.065 0.935 35 H 0.265 0.735 36 H 0.161 0.839 37 H 0.180 0.820 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 1.907 -28.381 29.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.016 3.984 3 H 0.078 0.922 4 N -0.312 5.312 5 C -0.055 4.055 6 C 0.003 3.997 7 H 0.137 0.863 8 C -0.069 4.069 9 N -0.183 5.183 10 C -0.040 4.040 11 C -0.570 4.570 12 H 0.046 0.954 13 C -0.194 4.194 14 N -0.595 5.595 15 Si 0.773 3.227 16 H -0.180 1.180 17 H -0.221 1.221 18 H -0.162 1.162 19 C -0.184 4.184 20 C 0.108 3.892 21 F -0.105 7.105 22 C -0.187 4.187 23 C -0.069 4.069 24 C -0.182 4.182 25 C 0.095 3.905 26 F -0.117 7.117 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.178 0.822 37 H 0.198 0.802 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.225 1.202 -28.263 28.965 hybrid contribution 0.568 1.037 1.118 1.627 sum -5.657 2.239 -27.145 27.819 Atomic orbital electron populations 1.21746 0.91879 1.02658 1.02538 1.20372 0.97462 0.95292 0.85317 0.92215 1.60718 1.33042 1.33138 1.04266 1.22096 1.02915 0.92820 0.87668 1.19099 0.82862 1.01233 0.96512 0.86262 1.29757 0.95438 0.91361 0.90324 1.81052 1.13726 1.11373 1.12103 1.19574 0.99291 0.94722 0.90430 1.21390 1.45942 0.97081 0.92578 0.95374 1.26050 0.94514 1.03623 0.95195 1.70094 1.50385 1.39198 0.99783 0.85667 0.79346 0.78926 0.78800 1.18026 1.22132 1.16156 1.20084 1.06493 0.93505 0.98268 1.17499 0.97392 0.88229 0.86092 1.91579 1.84363 1.77549 1.57002 1.21620 1.01760 1.02766 0.92592 1.21302 0.94537 0.92313 0.98719 1.21540 1.02802 0.96194 0.97623 1.17488 1.00579 0.76899 0.95567 1.91497 1.94264 1.29424 1.96550 0.91580 0.92360 0.90901 0.85064 0.86410 0.94112 0.95522 0.91725 0.92627 0.82170 0.80232 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.35 71.98 0.67 -1.86 16 2 C 0.12 2.78 2.61 44.17 0.12 2.89 16 3 H 0.06 1.35 6.93 -2.38 -0.02 1.33 16 4 N -0.68 -17.66 5.01 -495.44 -2.48 -20.14 16 5 C 0.07 1.98 4.92 86.30 0.42 2.41 16 6 C 0.02 0.87 2.42 -12.60 -0.03 0.84 16 7 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 8 C 0.25 10.18 12.98 89.44 1.16 11.34 16 9 N -0.51 -22.86 18.54 20.01 0.37 -22.49 16 10 C 0.00 -0.05 3.49 29.85 0.10 0.06 16 11 C -0.53 -29.25 9.15 25.60 0.23 -29.01 16 12 H 0.03 1.75 7.84 -2.91 -0.02 1.73 16 13 C 0.00 0.16 5.47 84.66 0.46 0.62 16 14 N -0.95 -59.71 13.96 21.45 0.30 -59.42 16 15 Si 0.95 41.99 27.47 68.60 1.88 43.87 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 17 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 18 H -0.24 -9.47 6.54 99.48 0.65 -8.81 16 19 C -0.18 -3.85 4.68 -19.78 -0.09 -3.94 16 20 C 0.13 2.66 6.79 22.37 0.15 2.81 16 21 F -0.13 -3.19 15.28 44.97 0.69 -2.51 16 22 C -0.17 -2.43 10.02 22.32 0.22 -2.21 16 23 C -0.05 -0.52 10.04 22.25 0.22 -0.29 16 24 C -0.16 -2.09 10.03 22.32 0.22 -1.86 16 25 C 0.11 2.17 7.25 22.37 0.16 2.33 16 26 F -0.14 -2.91 16.27 44.97 0.73 -2.18 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.23 7.68 -2.39 -0.02 1.21 16 29 H 0.07 1.31 7.45 -2.39 -0.02 1.29 16 30 H 0.33 9.58 7.12 -89.69 -0.64 8.95 16 31 H 0.12 2.59 7.44 -2.38 -0.02 2.58 16 32 H 0.04 1.06 8.05 -2.39 -0.02 1.04 16 33 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 34 H 0.06 2.35 7.57 -2.39 -0.02 2.33 16 35 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 38 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -71.05 332.52 5.93 -65.12 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.40 Total: 13.61 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 4.04 Total: -15.88 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -1.81 Total: -102.04 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 1.42 Total: -4.68 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.88 Total: 43.87 kcal Total: -71.05 5.93 -65.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264894999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.564 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds