Wall clock time and date at job start Tue Mar 31 2020 07:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47177 * 2 1 4 4 N 1.46901 * 109.47098 * 119.99912 * 2 1 3 5 5 C 1.46895 * 111.00119 * 275.00178 * 4 2 1 6 6 C 1.52994 * 109.47270 * 179.97438 * 5 4 2 7 7 H 1.09009 * 109.47154 * 54.99975 * 6 5 4 8 8 C 1.47200 * 109.47451 * 295.00037 * 6 5 4 9 9 N 4.90935 * 82.27805 * 119.13685 * 2 1 3 10 10 C 1.52996 * 109.47347 * 174.99819 * 6 5 4 11 11 C 1.50702 * 109.47159 * 185.00014 * 10 6 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 6 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 6 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.50701 * 109.47018 * 240.00341 * 2 1 3 20 20 C 1.38419 * 120.02246 * 284.71936 * 19 2 1 21 21 F 1.35097 * 120.01481 * 0.02562 * 20 19 2 22 22 C 1.38480 * 119.97318 * 179.75102 * 20 19 2 23 23 C 1.38206 * 120.02302 * 0.53082 * 22 20 19 24 24 C 1.38213 * 120.04876 * 359.74505 * 23 22 20 25 25 C 1.38417 * 120.02448 * 105.00274 * 19 2 1 26 26 F 1.35094 * 120.01558 * 359.97438 * 25 19 2 27 27 H 1.08995 * 109.46764 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47003 * 299.99920 * 1 2 3 29 29 H 1.08998 * 109.46661 * 60.00225 * 1 2 3 30 30 H 1.00905 * 110.99468 * 38.95862 * 4 2 1 31 31 H 1.08998 * 109.47324 * 59.99878 * 5 4 2 32 32 H 1.09002 * 109.47421 * 300.00055 * 5 4 2 33 33 H 1.09004 * 109.47066 * 65.00217 * 10 6 5 34 34 H 1.08994 * 109.47405 * 305.00047 * 10 6 5 35 35 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 36 36 H 1.07994 * 119.98541 * 180.27537 * 22 20 19 37 37 H 1.08003 * 119.97338 * 179.77025 * 23 22 20 38 38 H 1.08005 * 119.98030 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5744 7 1 3.5507 -1.0020 3.3397 8 6 1.6208 -1.5689 3.9552 9 7 0.8704 -2.3687 4.2492 10 6 2.7789 0.4456 4.7359 11 6 3.3988 -0.2740 5.9059 12 1 3.6380 -1.3244 5.8288 13 6 3.6662 0.4100 7.0729 14 7 4.2121 -0.2168 8.0921 15 14 3.2529 2.2268 7.2062 16 1 1.8699 2.3831 7.7239 17 1 4.2066 2.8844 8.1355 18 1 3.3539 2.8571 5.8655 19 6 2.0324 -0.7103 -1.2305 20 6 1.9761 -2.0914 -1.3044 21 9 1.4703 -2.8033 -0.2736 22 6 2.4332 -2.7428 -2.4377 23 6 2.9555 -2.0151 -3.4903 24 6 3.0174 -0.6364 -3.4151 25 6 2.5557 0.0174 -2.2852 26 9 2.6160 1.3650 -2.2123 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.4496 -1.4980 1.4100 31 1 1.0871 0.6163 2.5525 32 1 2.7588 1.0462 2.1183 33 1 1.8092 0.8479 5.0291 34 1 3.4313 1.2611 4.4240 35 1 4.3999 0.2643 8.9131 36 1 2.3853 -3.8200 -2.4974 37 1 3.3152 -2.5242 -4.3722 38 1 3.4262 -0.0689 -4.2381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264895006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:12 Heat of formation + Delta-G solvation = -47.015532 kcal Electronic energy + Delta-G solvation = -22964.316966 eV Core-core repulsion = 19249.464259 eV Total energy + Delta-G solvation = -3714.852707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.23223 -49.12904 -39.31908 -37.75746 -35.92426 -33.91797 -32.47825 -30.90996 -30.53402 -29.10376 -26.68777 -24.26266 -23.28690 -22.56280 -21.66483 -20.96633 -18.35980 -17.54400 -16.91873 -16.87616 -16.38121 -16.13568 -15.78355 -15.46237 -15.29544 -14.88386 -14.63027 -14.27735 -14.17520 -13.40570 -13.18069 -13.05864 -12.90243 -12.76544 -12.46444 -12.31160 -12.27092 -12.14460 -11.94395 -11.69042 -11.44588 -11.17159 -11.06023 -10.88188 -10.31152 -9.99383 -9.79800 -9.32933 -9.13369 -8.99297 -8.61110 -8.46382 -6.09941 -4.10558 0.70967 0.73834 3.08162 3.27300 3.34937 3.35364 3.53765 3.58557 3.66593 3.98088 4.17102 4.30511 4.38796 4.52540 4.55306 4.70647 4.84555 4.96015 5.04336 5.24613 5.32579 5.40273 5.46926 5.52810 5.60384 5.65893 5.74219 5.76472 5.86748 5.93650 6.00872 6.18211 6.35280 6.49984 6.92764 6.95474 7.12660 7.33258 7.64053 8.34737 8.43335 8.93736 9.49767 11.03197 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.003616 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.859341 B = 7741.382388 C = 8277.503060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 H 0.099 0.901 4 N -0.686 5.686 5 C 0.065 3.935 6 C 0.017 3.983 7 H 0.117 0.883 8 C 0.237 3.763 9 N -0.466 5.466 10 C -0.004 4.004 11 C -0.528 4.528 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.262 1.262 19 C -0.136 4.136 20 C 0.149 3.851 21 F -0.123 7.123 22 C -0.167 4.167 23 C -0.067 4.067 24 C -0.166 4.166 25 C 0.132 3.868 26 F -0.130 7.130 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.348 0.652 31 H 0.038 0.962 32 H 0.093 0.907 33 H 0.019 0.981 34 H 0.039 0.961 35 H 0.264 0.736 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 1.240 -26.364 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.012 3.988 3 H 0.117 0.883 4 N -0.319 5.319 5 C -0.065 4.065 6 C -0.005 4.005 7 H 0.134 0.866 8 C -0.080 4.080 9 N -0.143 5.143 10 C -0.043 4.043 11 C -0.566 4.566 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.705 3.295 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.187 1.187 19 C -0.138 4.138 20 C 0.129 3.871 21 F -0.101 7.101 22 C -0.186 4.186 23 C -0.085 4.085 24 C -0.185 4.185 25 C 0.112 3.888 26 F -0.108 7.108 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.131 0.153 -25.824 26.153 hybrid contribution -0.812 1.366 0.655 1.719 sum -4.943 1.519 -25.169 25.694 Atomic orbital electron populations 1.22487 0.95693 1.02822 1.02895 1.20314 0.93163 0.97920 0.87446 0.88298 1.60665 1.57575 1.10132 1.03490 1.22155 1.00467 0.95304 0.88559 1.19064 0.94534 0.91610 0.95267 0.86555 1.29126 0.93420 0.93501 0.91957 1.81022 1.11960 1.11526 1.09774 1.19633 0.97602 0.94473 0.92555 1.21032 1.41158 0.98101 0.96269 0.90771 1.24993 0.94357 0.98224 0.95548 1.69906 1.42881 1.36677 1.04039 0.86814 0.78464 0.85705 0.78537 1.20319 1.21235 1.18677 1.19885 1.04058 0.92806 0.97076 1.17149 0.96683 0.88153 0.85113 1.91502 1.84247 1.77698 1.56676 1.21230 1.02644 1.01508 0.93180 1.20807 0.96732 0.92767 0.98219 1.21158 1.03962 0.95450 0.97971 1.17154 0.99795 0.77139 0.94667 1.91515 1.94120 1.28756 1.96443 0.92049 0.91421 0.91759 0.83113 0.94392 0.88909 0.96254 0.94245 0.92568 0.84113 0.84100 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.10 37.16 0.34 -1.56 16 2 C 0.12 1.41 2.60 -68.86 -0.18 1.23 16 3 H 0.10 1.11 6.93 -51.93 -0.36 0.75 16 4 N -0.69 -9.29 5.66 -107.95 -0.61 -9.90 16 5 C 0.06 0.92 4.92 -3.83 -0.02 0.90 16 6 C 0.02 0.31 2.42 -93.41 -0.23 0.08 16 7 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 8 C 0.24 4.84 12.97 -20.78 -0.27 4.57 16 9 N -0.47 -10.35 18.53 42.13 0.78 -9.57 16 10 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 11 C -0.53 -14.34 9.15 -34.44 -0.32 -14.66 16 12 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 15 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 19 C -0.14 -1.50 4.96 -104.49 -0.52 -2.02 16 20 C 0.15 1.63 6.99 -39.43 -0.28 1.35 16 21 F -0.12 -1.57 14.34 2.25 0.03 -1.53 16 22 C -0.17 -1.39 10.03 -39.50 -0.40 -1.79 16 23 C -0.07 -0.45 10.04 -39.60 -0.40 -0.85 16 24 C -0.17 -1.27 10.02 -39.50 -0.40 -1.67 16 25 C 0.13 1.32 7.24 -39.43 -0.29 1.03 16 26 F -0.13 -1.38 16.27 2.25 0.04 -1.34 16 27 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 28 H 0.07 0.71 7.45 -51.93 -0.39 0.33 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.35 5.06 5.77 -39.29 -0.23 4.84 16 31 H 0.04 0.52 7.43 -51.93 -0.39 0.13 16 32 H 0.09 1.19 8.06 -51.93 -0.42 0.78 16 33 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 34 H 0.04 0.80 7.19 -51.93 -0.37 0.43 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 38 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -31.52 331.08 -6.44 -37.96 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.64 Total: 1.40 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -3.13 Total: -11.63 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.94 Total: -45.94 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.07 Total: -2.87 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.52 -6.44 -37.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264895006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.057 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds