Wall clock time and date at job start Tue Mar 31 2020 07:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47177 * 2 1 4 4 N 1.46901 * 109.47098 * 119.99912 * 2 1 3 5 5 C 1.46895 * 111.00119 * 275.00178 * 4 2 1 6 6 C 1.52994 * 109.47270 * 179.97438 * 5 4 2 7 7 H 1.09009 * 109.47154 * 54.99975 * 6 5 4 8 8 C 1.47200 * 109.47451 * 295.00037 * 6 5 4 9 9 N 4.90935 * 82.27805 * 119.13685 * 2 1 3 10 10 C 1.52996 * 109.47347 * 174.99819 * 6 5 4 11 11 C 1.50702 * 109.47159 * 185.00014 * 10 6 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 6 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 6 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.50701 * 109.47018 * 240.00341 * 2 1 3 20 20 C 1.38419 * 120.02246 * 284.71936 * 19 2 1 21 21 F 1.35097 * 120.01481 * 0.02562 * 20 19 2 22 22 C 1.38480 * 119.97318 * 179.75102 * 20 19 2 23 23 C 1.38206 * 120.02302 * 0.53082 * 22 20 19 24 24 C 1.38213 * 120.04876 * 359.74505 * 23 22 20 25 25 C 1.38417 * 120.02448 * 105.00274 * 19 2 1 26 26 F 1.35094 * 120.01558 * 359.97438 * 25 19 2 27 27 H 1.08995 * 109.46764 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47003 * 299.99920 * 1 2 3 29 29 H 1.08998 * 109.46661 * 60.00225 * 1 2 3 30 30 H 1.00905 * 110.99468 * 38.95862 * 4 2 1 31 31 H 1.08998 * 109.47324 * 59.99878 * 5 4 2 32 32 H 1.09002 * 109.47421 * 300.00055 * 5 4 2 33 33 H 1.09004 * 109.47066 * 65.00217 * 10 6 5 34 34 H 1.08994 * 109.47405 * 305.00047 * 10 6 5 35 35 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 36 36 H 1.07994 * 119.98541 * 180.27537 * 22 20 19 37 37 H 1.08003 * 119.97338 * 179.77025 * 23 22 20 38 38 H 1.08005 * 119.98030 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5744 7 1 3.5507 -1.0020 3.3397 8 6 1.6208 -1.5689 3.9552 9 7 0.8704 -2.3687 4.2492 10 6 2.7789 0.4456 4.7359 11 6 3.3988 -0.2740 5.9059 12 1 3.6380 -1.3244 5.8288 13 6 3.6662 0.4100 7.0729 14 7 4.2121 -0.2168 8.0921 15 14 3.2529 2.2268 7.2062 16 1 1.8699 2.3831 7.7239 17 1 4.2066 2.8844 8.1355 18 1 3.3539 2.8571 5.8655 19 6 2.0324 -0.7103 -1.2305 20 6 1.9761 -2.0914 -1.3044 21 9 1.4703 -2.8033 -0.2736 22 6 2.4332 -2.7428 -2.4377 23 6 2.9555 -2.0151 -3.4903 24 6 3.0174 -0.6364 -3.4151 25 6 2.5557 0.0174 -2.2852 26 9 2.6160 1.3650 -2.2123 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.4496 -1.4980 1.4100 31 1 1.0871 0.6163 2.5525 32 1 2.7588 1.0462 2.1183 33 1 1.8092 0.8479 5.0291 34 1 3.4313 1.2611 4.4240 35 1 4.3999 0.2643 8.9131 36 1 2.3853 -3.8200 -2.4974 37 1 3.3152 -2.5242 -4.3722 38 1 3.4262 -0.0689 -4.2381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264895006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:12 Heat of formation + Delta-G solvation = -66.075527 kcal Electronic energy + Delta-G solvation = -22965.143469 eV Core-core repulsion = 19249.464259 eV Total energy + Delta-G solvation = -3715.679210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.96661 -49.96171 -40.06343 -38.98013 -37.21573 -35.62232 -34.18669 -32.13066 -31.18142 -30.07477 -28.26807 -25.18846 -24.20177 -23.51340 -23.37405 -21.90005 -19.11433 -18.95055 -18.41274 -18.16779 -17.27588 -16.93137 -16.63362 -16.48961 -16.25368 -16.05655 -15.68096 -15.41621 -15.11953 -14.92978 -14.72217 -14.36799 -14.09714 -13.86689 -13.64643 -13.59657 -13.30237 -13.18791 -13.00429 -12.83899 -12.65107 -12.55838 -12.45939 -11.97666 -11.90664 -11.72377 -11.52547 -11.33458 -10.74383 -9.84895 -9.67109 -9.46886 -8.25358 -6.31251 0.04980 0.07371 1.42889 1.44076 1.55423 1.89897 1.91992 2.40492 2.43411 2.96643 3.04589 3.09988 3.19528 3.49760 3.54004 3.79797 3.93959 4.03268 4.19678 4.24392 4.30721 4.33460 4.51001 4.62007 4.72243 4.83612 4.87143 4.93257 4.95669 5.06854 5.13249 5.15677 5.23286 5.27742 5.43174 5.61874 5.83664 5.96076 6.21466 6.25560 6.71031 6.78211 7.33030 8.91678 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.003616 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.859341 B = 7741.382388 C = 8277.503060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.122 3.878 3 H 0.104 0.896 4 N -0.692 5.692 5 C 0.075 3.925 6 C 0.024 3.976 7 H 0.117 0.883 8 C 0.247 3.753 9 N -0.503 5.503 10 C -0.001 4.001 11 C -0.532 4.532 12 H 0.027 0.973 13 C 0.003 3.997 14 N -0.954 5.954 15 Si 0.949 3.051 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.223 1.223 19 C -0.152 4.152 20 C 0.120 3.880 21 F -0.142 7.142 22 C -0.167 4.167 23 C -0.056 4.056 24 C -0.159 4.159 25 C 0.117 3.883 26 F -0.137 7.137 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.340 0.660 31 H 0.047 0.953 32 H 0.115 0.885 33 H 0.027 0.973 34 H 0.066 0.934 35 H 0.265 0.735 36 H 0.157 0.843 37 H 0.179 0.821 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.684 3.293 -29.433 29.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.012 3.988 3 H 0.122 0.878 4 N -0.324 5.324 5 C -0.055 4.055 6 C 0.002 3.998 7 H 0.135 0.865 8 C -0.070 4.070 9 N -0.181 5.181 10 C -0.040 4.040 11 C -0.570 4.570 12 H 0.046 0.954 13 C -0.194 4.194 14 N -0.595 5.595 15 Si 0.772 3.228 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.145 1.145 19 C -0.154 4.154 20 C 0.100 3.900 21 F -0.120 7.120 22 C -0.185 4.185 23 C -0.073 4.073 24 C -0.177 4.177 25 C 0.097 3.903 26 F -0.115 7.115 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.160 0.840 31 H 0.065 0.935 32 H 0.133 0.867 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.174 0.826 37 H 0.196 0.804 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.113 2.208 -28.937 29.311 hybrid contribution -0.769 0.590 1.533 1.814 sum -4.882 2.798 -27.403 27.975 Atomic orbital electron populations 1.22427 0.95193 1.02292 1.03439 1.20346 0.93630 0.97951 0.86846 0.87810 1.60652 1.57908 1.09975 1.03880 1.22069 1.01297 0.95113 0.87034 1.19106 0.94202 0.90602 0.95916 0.86540 1.29695 0.93028 0.93295 0.90935 1.81013 1.13448 1.12646 1.10981 1.19580 0.97739 0.95220 0.91457 1.21396 1.40640 0.96527 0.98464 0.95442 1.26055 0.94286 1.04020 0.95039 1.70090 1.45228 1.39145 1.05017 0.85685 0.77811 0.78965 0.80374 1.20183 1.21476 1.14495 1.19884 1.05180 0.93004 0.97325 1.17499 0.98318 0.88424 0.85758 1.91452 1.84809 1.78069 1.57697 1.21542 1.01792 1.02552 0.92649 1.21253 0.95012 0.92440 0.98627 1.21533 1.02507 0.96046 0.97645 1.17369 1.00654 0.76945 0.95361 1.91494 1.94275 1.29211 1.96538 0.93107 0.91521 0.90475 0.84044 0.93499 0.86673 0.95479 0.91591 0.92627 0.82576 0.80371 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 9.10 71.98 0.66 -2.86 16 2 C 0.12 2.67 2.60 44.17 0.11 2.78 16 3 H 0.10 2.13 6.93 -2.39 -0.02 2.11 16 4 N -0.69 -18.10 5.66 -495.46 -2.81 -20.90 16 5 C 0.07 1.96 4.92 86.30 0.42 2.39 16 6 C 0.02 0.83 2.42 -12.60 -0.03 0.80 16 7 H 0.12 4.12 8.14 -2.38 -0.02 4.10 16 8 C 0.25 10.17 12.97 89.45 1.16 11.33 16 9 N -0.50 -22.85 18.53 20.00 0.37 -22.48 16 10 C 0.00 -0.04 3.49 29.85 0.10 0.06 16 11 C -0.53 -29.29 9.15 25.60 0.23 -29.06 16 12 H 0.03 1.71 7.84 -2.91 -0.02 1.69 16 13 C 0.00 0.15 5.47 84.66 0.46 0.61 16 14 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 15 Si 0.95 41.89 27.47 68.60 1.88 43.78 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.22 -8.36 6.54 99.48 0.65 -7.71 16 19 C -0.15 -3.17 4.96 -19.78 -0.10 -3.27 16 20 C 0.12 2.53 6.99 22.37 0.16 2.69 16 21 F -0.14 -3.68 14.34 44.97 0.64 -3.03 16 22 C -0.17 -2.45 10.03 22.32 0.22 -2.22 16 23 C -0.06 -0.55 10.04 22.26 0.22 -0.32 16 24 C -0.16 -1.91 10.02 22.32 0.22 -1.69 16 25 C 0.12 2.09 7.24 22.37 0.16 2.25 16 26 F -0.14 -2.63 16.27 44.97 0.73 -1.90 16 27 H 0.05 1.12 7.67 -2.39 -0.02 1.10 16 28 H 0.07 1.32 7.45 -2.39 -0.02 1.31 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.34 9.90 5.77 -89.69 -0.52 9.39 16 31 H 0.05 1.17 7.43 -2.39 -0.02 1.15 16 32 H 0.12 2.56 8.06 -2.39 -0.02 2.54 16 33 H 0.03 1.09 7.57 -2.38 -0.02 1.07 16 34 H 0.07 2.43 7.19 -2.39 -0.02 2.41 16 35 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 38 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -71.25 331.08 5.66 -65.59 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.52 Total: 14.94 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 4.02 Total: -16.49 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -2.14 Total: -102.88 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.38 Total: -4.93 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.78 kcal Total: -71.25 5.66 -65.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264895006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.488 kcal (2) G-P(sol) polarization free energy of solvation -71.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds