Wall clock time and date at job start Tue Mar 31 2020 07:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31153 * 1 3 3 Cl 1.73602 * 120.00054 * 2 1 4 4 C 1.50697 * 120.00197 * 179.97438 * 2 1 3 5 5 N 1.46901 * 109.46943 * 114.99963 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47066 * 180.02562 * 6 5 4 8 8 C 1.38284 * 119.92731 * 269.72721 * 7 6 5 9 9 C 1.38107 * 120.07495 * 179.72775 * 8 7 6 10 10 C 1.38905 * 119.92196 * 0.54269 * 9 8 7 11 11 N 1.39682 * 120.07290 * 179.74950 * 10 9 8 12 12 C 1.46495 * 119.99815 * 179.97438 * 11 10 9 13 13 C 1.46503 * 119.99949 * 359.97438 * 11 10 9 14 14 C 1.50696 * 109.46934 * 89.99878 * 13 11 10 15 15 H 1.08001 * 120.00501 * 359.97438 * 14 13 11 16 16 C 1.37884 * 119.99736 * 180.02562 * 14 13 11 17 17 N 1.31515 * 120.00102 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99824 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46922 * 90.00519 * 18 16 14 20 20 H 1.48500 * 109.46780 * 210.00123 * 18 16 14 21 21 H 1.48492 * 109.47061 * 330.00447 * 18 16 14 22 22 C 1.38908 * 119.85666 * 359.73022 * 10 9 8 23 23 C 1.38113 * 119.92265 * 359.97438 * 22 10 9 24 24 H 1.07996 * 120.00330 * 180.02562 * 1 2 3 25 25 H 1.08009 * 120.00066 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46763 * 355.00405 * 4 2 1 27 27 H 1.08995 * 109.47483 * 235.00062 * 4 2 1 28 28 H 1.00901 * 111.00067 * 303.95401 * 5 4 2 29 29 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 30 30 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 31 31 H 1.08001 * 119.96155 * 359.97438 * 8 7 6 32 32 H 1.08001 * 120.03692 * 180.27771 * 9 8 7 33 33 H 1.09006 * 109.47190 * 90.00390 * 12 11 10 34 34 H 1.09005 * 109.47273 * 210.00039 * 12 11 10 35 35 H 1.08999 * 109.47518 * 330.00267 * 12 11 10 36 36 H 1.08992 * 109.47000 * 209.99766 * 13 11 10 37 37 H 1.08998 * 109.46696 * 330.00052 * 13 11 10 38 38 H 0.96995 * 120.00351 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.04104 * 179.97438 * 22 10 9 40 40 H 1.07994 * 119.96170 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.8168 -1.4370 -1.2546 6 6 3.5650 -2.7007 -1.2898 7 6 4.3223 -2.8001 -2.5889 8 6 3.7305 -3.3933 -3.6889 9 6 4.4197 -3.4810 -4.8825 10 6 5.7129 -2.9824 -4.9741 11 7 6.4148 -3.0741 -6.1783 12 6 7.7784 -2.5473 -6.2732 13 6 5.7872 -3.6971 -7.3463 14 6 5.0564 -2.6476 -8.1434 15 1 5.0588 -1.6194 -7.8129 16 6 4.3838 -3.0001 -9.2943 17 7 3.7456 -2.0844 -9.9897 18 14 4.3791 -4.7786 -9.8656 19 1 3.2196 -5.4876 -9.2674 20 1 4.2758 -4.8225 -11.3464 21 1 5.6381 -5.4394 -9.4374 22 6 6.3066 -2.3921 -3.8656 23 6 5.6095 -2.3023 -2.6767 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5401 0.9354 -0.0004 26 1 1.3601 -2.1316 0.0905 27 1 2.7572 -1.3247 0.8424 28 1 2.2047 -1.3571 -2.0528 29 1 4.2674 -2.7304 -0.4569 30 1 2.8701 -3.5366 -1.2091 31 1 2.7267 -3.7850 -3.6156 32 1 3.9552 -3.9404 -5.7425 33 1 8.4896 -3.3303 -6.0098 34 1 7.9683 -2.2120 -7.2928 35 1 7.8922 -1.7076 -5.5875 36 1 6.5545 -4.1573 -7.9688 37 1 5.0816 -4.4594 -7.0162 38 1 3.2727 -2.3323 -10.7995 39 1 7.3121 -2.0039 -3.9334 40 1 6.0706 -1.8439 -1.8145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267040576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:10 Heat of formation + Delta-G solvation = 47.741149 kcal Electronic energy + Delta-G solvation = -20406.623832 eV Core-core repulsion = 17247.676764 eV Total energy + Delta-G solvation = -3158.947068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.13972 -37.49641 -36.43652 -35.34771 -33.07225 -32.51321 -30.55112 -29.91914 -28.33805 -26.60286 -24.87475 -23.42695 -22.10777 -21.36639 -20.26339 -19.54736 -17.02016 -16.92988 -16.43605 -15.37976 -15.05969 -14.97211 -14.56067 -14.37735 -14.19324 -13.68552 -13.41419 -13.10028 -12.93908 -12.79314 -12.47156 -12.23283 -11.93158 -11.80580 -11.70345 -11.61365 -11.45605 -11.01120 -10.92320 -10.69434 -10.61592 -10.26081 -10.07265 -9.60142 -9.40567 -8.92529 -8.66863 -8.48471 -8.31395 -6.42851 -6.15217 -4.15348 1.61250 2.05774 2.14641 2.17798 3.20347 3.28404 3.29033 4.02989 4.13527 4.31211 4.46652 4.64012 5.02545 5.14936 5.17975 5.28299 5.30916 5.34946 5.53924 5.57645 5.70110 5.77622 5.82315 5.94409 5.98994 6.00993 6.22498 6.30276 6.36632 6.54021 6.72431 6.73901 6.85460 7.03230 7.05815 7.18777 7.34091 7.50887 7.53125 8.03596 8.32883 8.50516 8.92793 9.44449 10.97807 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.003176 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.507303 B = 8814.565197 C = 9370.835175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.061 4.061 3 Cl -0.076 7.076 4 C 0.093 3.907 5 N -0.679 5.679 6 C 0.117 3.883 7 C -0.172 4.172 8 C -0.066 4.066 9 C -0.188 4.188 10 C 0.242 3.758 11 N -0.611 5.611 12 C 0.098 3.902 13 C 0.221 3.779 14 C -0.535 4.535 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.894 5.894 18 Si 0.872 3.128 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.265 1.265 22 C -0.219 4.219 23 C -0.049 4.049 24 H 0.120 0.880 25 H 0.112 0.888 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.347 0.653 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.115 0.885 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 -0.599 19.877 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.088 4.088 3 Cl -0.048 7.048 4 C -0.036 4.036 5 N -0.310 5.310 6 C -0.011 4.011 7 C -0.175 4.175 8 C -0.085 4.085 9 C -0.211 4.211 10 C 0.136 3.864 11 N -0.317 5.317 12 C -0.046 4.046 13 C 0.099 3.901 14 C -0.574 4.574 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.532 5.532 18 Si 0.699 3.301 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.242 4.242 23 C -0.068 4.068 24 H 0.138 0.862 25 H 0.130 0.870 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.166 0.834 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.447 -0.112 19.712 19.765 hybrid contribution -0.847 -1.219 -0.774 1.674 sum -2.294 -1.330 18.938 19.122 Atomic orbital electron populations 1.24049 0.93917 1.03673 1.00356 1.23313 0.93497 0.88560 1.03398 1.98384 1.78175 1.31584 1.96655 1.21103 0.96208 0.91268 0.95028 1.60545 1.30743 1.36531 1.03228 1.20657 0.95645 0.88806 0.96002 1.19145 0.95838 1.07406 0.95073 1.20647 0.98222 0.97524 0.92157 1.20777 0.94455 1.07205 0.98617 1.17926 0.91085 0.91683 0.85731 1.46724 1.13678 1.62246 1.09023 1.21500 0.83084 0.97562 1.02426 1.19654 0.93386 0.93812 0.83210 1.21488 1.31764 0.96364 1.07746 0.90527 1.24904 0.94775 0.97151 0.96189 1.69901 1.33444 1.33254 1.16627 0.86913 0.79147 0.85658 0.78395 1.19931 1.20946 1.19020 1.20582 1.01314 1.09072 0.93200 1.20514 0.93559 0.96336 0.96389 0.86181 0.86955 0.93350 0.89518 0.83436 0.90915 0.95143 0.87382 0.85454 0.94527 0.91261 0.92323 0.95446 0.95529 0.92503 0.86735 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 14.04 28.97 0.41 -1.00 16 2 C -0.06 -0.58 6.01 -36.07 -0.22 -0.79 16 3 Cl -0.08 -0.85 28.99 -51.86 -1.50 -2.35 16 4 C 0.09 0.85 6.00 -4.98 -0.03 0.82 16 5 N -0.68 -7.84 6.48 -116.34 -0.75 -8.60 16 6 C 0.12 1.36 5.81 -4.97 -0.03 1.33 16 7 C -0.17 -2.55 5.39 -104.59 -0.56 -3.12 16 8 C -0.07 -1.08 9.69 -39.61 -0.38 -1.47 16 9 C -0.19 -3.68 9.21 -39.38 -0.36 -4.04 16 10 C 0.24 4.80 6.55 -83.79 -0.55 4.25 16 11 N -0.61 -12.74 2.99 -181.00 -0.54 -13.28 16 12 C 0.10 1.68 10.19 59.84 0.61 2.29 16 13 C 0.22 5.17 3.98 -5.19 -0.02 5.15 16 14 C -0.54 -14.85 9.94 -34.44 -0.34 -15.19 16 15 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 17 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 18 Si 0.87 20.60 27.47 -169.99 -4.67 15.93 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 22 C -0.22 -3.76 9.21 -39.38 -0.36 -4.12 16 23 C -0.05 -0.75 9.69 -39.61 -0.38 -1.14 16 24 H 0.12 0.73 7.84 -52.49 -0.41 0.32 16 25 H 0.11 0.81 8.06 -52.48 -0.42 0.39 16 26 H 0.05 0.37 7.80 -51.93 -0.40 -0.03 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.35 4.23 8.71 -39.29 -0.34 3.88 16 29 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 30 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.13 2.68 6.14 -52.49 -0.32 2.36 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 35 H 0.06 0.91 6.20 -51.93 -0.32 0.59 16 36 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 37 H 0.03 0.62 5.62 -51.93 -0.29 0.33 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.11 1.78 6.14 -52.49 -0.32 1.46 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -30.22 348.48 -9.52 -39.74 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.75 Total: 4.53 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.33 Total: -15.07 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.52 Total: -48.03 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.22 -9.52 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267040576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.476 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds