Wall clock time and date at job start Tue Mar 31 2020 07:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31153 * 1 3 3 Cl 1.73602 * 120.00054 * 2 1 4 4 C 1.50697 * 120.00197 * 179.97438 * 2 1 3 5 5 N 1.46901 * 109.46943 * 114.99963 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47066 * 180.02562 * 6 5 4 8 8 C 1.38284 * 119.92731 * 269.72721 * 7 6 5 9 9 C 1.38107 * 120.07495 * 179.72775 * 8 7 6 10 10 C 1.38905 * 119.92196 * 0.54269 * 9 8 7 11 11 N 1.39682 * 120.07290 * 179.74950 * 10 9 8 12 12 C 1.46495 * 119.99815 * 179.97438 * 11 10 9 13 13 C 1.46503 * 119.99949 * 359.97438 * 11 10 9 14 14 C 1.50696 * 109.46934 * 89.99878 * 13 11 10 15 15 H 1.08001 * 120.00501 * 359.97438 * 14 13 11 16 16 C 1.37884 * 119.99736 * 180.02562 * 14 13 11 17 17 N 1.31515 * 120.00102 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99824 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46922 * 90.00519 * 18 16 14 20 20 H 1.48500 * 109.46780 * 210.00123 * 18 16 14 21 21 H 1.48492 * 109.47061 * 330.00447 * 18 16 14 22 22 C 1.38908 * 119.85666 * 359.73022 * 10 9 8 23 23 C 1.38113 * 119.92265 * 359.97438 * 22 10 9 24 24 H 1.07996 * 120.00330 * 180.02562 * 1 2 3 25 25 H 1.08009 * 120.00066 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46763 * 355.00405 * 4 2 1 27 27 H 1.08995 * 109.47483 * 235.00062 * 4 2 1 28 28 H 1.00901 * 111.00067 * 303.95401 * 5 4 2 29 29 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 30 30 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 31 31 H 1.08001 * 119.96155 * 359.97438 * 8 7 6 32 32 H 1.08001 * 120.03692 * 180.27771 * 9 8 7 33 33 H 1.09006 * 109.47190 * 90.00390 * 12 11 10 34 34 H 1.09005 * 109.47273 * 210.00039 * 12 11 10 35 35 H 1.08999 * 109.47518 * 330.00267 * 12 11 10 36 36 H 1.08992 * 109.47000 * 209.99766 * 13 11 10 37 37 H 1.08998 * 109.46696 * 330.00052 * 13 11 10 38 38 H 0.96995 * 120.00351 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.04104 * 179.97438 * 22 10 9 40 40 H 1.07994 * 119.96170 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.8168 -1.4370 -1.2546 6 6 3.5650 -2.7007 -1.2898 7 6 4.3223 -2.8001 -2.5889 8 6 3.7305 -3.3933 -3.6889 9 6 4.4197 -3.4810 -4.8825 10 6 5.7129 -2.9824 -4.9741 11 7 6.4148 -3.0741 -6.1783 12 6 7.7784 -2.5473 -6.2732 13 6 5.7872 -3.6971 -7.3463 14 6 5.0564 -2.6476 -8.1434 15 1 5.0588 -1.6194 -7.8129 16 6 4.3838 -3.0001 -9.2943 17 7 3.7456 -2.0844 -9.9897 18 14 4.3791 -4.7786 -9.8656 19 1 3.2196 -5.4876 -9.2674 20 1 4.2758 -4.8225 -11.3464 21 1 5.6381 -5.4394 -9.4374 22 6 6.3066 -2.3921 -3.8656 23 6 5.6095 -2.3023 -2.6767 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5401 0.9354 -0.0004 26 1 1.3601 -2.1316 0.0905 27 1 2.7572 -1.3247 0.8424 28 1 2.2047 -1.3571 -2.0528 29 1 4.2674 -2.7304 -0.4569 30 1 2.8701 -3.5366 -1.2091 31 1 2.7267 -3.7850 -3.6156 32 1 3.9552 -3.9404 -5.7425 33 1 8.4896 -3.3303 -6.0098 34 1 7.9683 -2.2120 -7.2928 35 1 7.8922 -1.7076 -5.5875 36 1 6.5545 -4.1573 -7.9688 37 1 5.0816 -4.4594 -7.0162 38 1 3.2727 -2.3323 -10.7995 39 1 7.3121 -2.0039 -3.9334 40 1 6.0706 -1.8439 -1.8145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267040576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:09 Heat of formation + Delta-G solvation = 29.504682 kcal Electronic energy + Delta-G solvation = -20407.414625 eV Core-core repulsion = 17247.676764 eV Total energy + Delta-G solvation = -3159.737861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47625 -38.37749 -37.53319 -36.44198 -34.75319 -33.75019 -31.97280 -31.16971 -30.03930 -27.70643 -26.21100 -24.70536 -23.45078 -22.83789 -21.14268 -20.74978 -19.08109 -18.24000 -17.49155 -16.80657 -16.28442 -15.95454 -15.86787 -15.46690 -15.33062 -15.07139 -14.82377 -14.50635 -14.33848 -14.23851 -13.61313 -13.37047 -13.20273 -13.17136 -12.96282 -12.72330 -12.58502 -12.43346 -12.40042 -12.07425 -11.96331 -11.75378 -11.57809 -11.44112 -10.82513 -10.43662 -10.07434 -9.66377 -9.30759 -8.33429 -7.91073 -6.39053 0.71120 0.79306 1.02419 1.34227 1.35215 1.45192 1.46043 2.30467 2.54521 3.00197 3.03303 3.54505 3.80455 4.05867 4.12116 4.23671 4.39641 4.42148 4.53132 4.62496 4.64173 4.70009 4.74561 4.76932 4.82514 4.82671 4.90236 5.06114 5.09883 5.20913 5.31100 5.33823 5.45520 5.60616 5.65398 5.91918 6.07506 6.10869 6.24416 6.41920 6.59947 6.70002 6.87349 7.26529 8.84095 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.003176 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.507303 B = 8814.565197 C = 9370.835175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.084 4.084 3 Cl -0.101 7.101 4 C 0.098 3.902 5 N -0.693 5.693 6 C 0.122 3.878 7 C -0.159 4.159 8 C -0.067 4.067 9 C -0.217 4.217 10 C 0.211 3.789 11 N -0.629 5.629 12 C 0.097 3.903 13 C 0.232 3.768 14 C -0.537 4.537 15 H 0.023 0.977 16 C 0.012 3.988 17 N -0.946 5.946 18 Si 0.947 3.053 19 H -0.264 1.264 20 H -0.280 1.280 21 H -0.243 1.243 22 C -0.219 4.219 23 C -0.050 4.050 24 H 0.143 0.857 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.341 0.659 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.268 0.732 39 H 0.130 0.870 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 -2.321 22.178 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 Cl -0.073 7.073 4 C -0.031 4.031 5 N -0.324 5.324 6 C -0.006 4.006 7 C -0.161 4.161 8 C -0.087 4.087 9 C -0.240 4.240 10 C 0.107 3.893 11 N -0.337 5.337 12 C -0.046 4.046 13 C 0.110 3.890 14 C -0.576 4.576 15 H 0.041 0.959 16 C -0.186 4.186 17 N -0.586 5.586 18 Si 0.770 3.230 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.167 1.167 22 C -0.242 4.242 23 C -0.069 4.069 24 H 0.160 0.840 25 H 0.133 0.867 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.159 0.841 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.146 0.854 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.148 0.852 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.559 -1.826 22.070 22.200 hybrid contribution -0.912 -0.556 -1.331 1.706 sum -2.471 -2.382 20.740 21.022 Atomic orbital electron populations 1.24318 0.93409 1.04897 0.97546 1.23450 0.93971 0.87814 1.05785 1.98377 1.78794 1.33202 1.96913 1.21120 0.96545 0.91638 0.93766 1.60496 1.31449 1.36375 1.04096 1.20641 0.96037 0.89600 0.94295 1.19540 0.95741 1.04925 0.95911 1.20876 0.98922 0.97336 0.91523 1.20793 0.95153 1.08871 0.99188 1.18219 0.91559 0.93333 0.86220 1.46703 1.14913 1.63463 1.08657 1.21628 0.82041 0.98848 1.02086 1.19329 0.93220 0.92569 0.83916 1.21673 1.32355 0.95121 1.08470 0.95862 1.25885 0.94085 1.02486 0.96156 1.70070 1.34944 1.36116 1.17479 0.85717 0.80344 0.79175 0.77772 1.18909 1.20579 1.16673 1.20821 1.02113 1.08277 0.92944 1.20890 0.93781 0.95710 0.96542 0.83978 0.86652 0.91236 0.89152 0.84080 0.89447 0.93539 0.85441 0.88084 0.91946 0.92623 0.90946 0.94687 0.95206 0.92309 0.85234 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 14.04 67.63 0.95 -1.15 16 2 C -0.08 -1.41 6.01 25.49 0.15 -1.25 16 3 Cl -0.10 -2.16 28.99 -2.72 -0.08 -2.24 16 4 C 0.10 1.50 6.00 85.56 0.51 2.01 16 5 N -0.69 -14.19 6.48 -521.98 -3.38 -17.57 16 6 C 0.12 2.43 5.81 85.55 0.50 2.93 16 7 C -0.16 -4.35 5.39 -19.84 -0.11 -4.45 16 8 C -0.07 -2.14 9.69 22.25 0.22 -1.93 16 9 C -0.22 -8.65 9.21 22.40 0.21 -8.45 16 10 C 0.21 8.42 6.55 38.21 0.25 8.67 16 11 N -0.63 -26.61 2.99 -726.57 -2.17 -28.78 16 12 C 0.10 3.30 10.19 127.77 1.30 4.60 16 13 C 0.23 11.06 3.98 85.63 0.34 11.40 16 14 C -0.54 -31.14 9.94 25.60 0.25 -30.88 16 15 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 16 C 0.01 0.69 5.47 84.66 0.46 1.15 16 17 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 18 Si 0.95 42.89 27.47 68.60 1.88 44.77 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 22 C -0.22 -7.26 9.21 22.40 0.21 -7.06 16 23 C -0.05 -1.43 9.69 22.25 0.22 -1.22 16 24 H 0.14 1.20 7.84 -2.91 -0.02 1.17 16 25 H 0.12 1.42 8.06 -2.91 -0.02 1.39 16 26 H 0.07 0.79 7.80 -2.39 -0.02 0.78 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.34 7.61 8.71 -89.69 -0.78 6.83 16 29 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 30 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 31 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.10 4.46 6.14 -2.91 -0.02 4.44 16 33 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.05 2.00 8.07 -2.38 -0.02 1.98 16 35 H 0.07 2.20 6.20 -2.39 -0.01 2.19 16 36 H 0.04 1.61 7.13 -2.39 -0.02 1.59 16 37 H 0.03 1.40 5.62 -2.39 -0.01 1.39 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.13 3.80 6.14 -2.91 -0.02 3.78 16 40 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -68.69 348.48 2.21 -66.48 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.20 Total: 21.84 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 5.46 Total: -25.63 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -5.26 Total: -105.22 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.08 Total: -2.24 kcal Total: -68.69 2.21 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267040576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.981 kcal (2) G-P(sol) polarization free energy of solvation -68.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds