Wall clock time and date at job start Tue Mar 31 2020 07:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.46929 * 2 1 4 4 C 1.46897 * 111.00169 * 71.28548 * 3 2 1 5 5 C 1.50701 * 109.46836 * 285.04811 * 4 3 2 6 6 H 1.07999 * 120.00606 * 357.82115 * 5 4 3 7 7 C 1.37883 * 119.99927 * 177.82083 * 5 4 3 8 8 N 1.31511 * 120.00233 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99735 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46922 * 89.99830 * 9 7 5 11 11 H 1.48500 * 109.46964 * 209.99977 * 9 7 5 12 12 H 1.48494 * 109.46969 * 330.00153 * 9 7 5 13 13 C 1.46894 * 110.99888 * 195.24076 * 3 2 1 14 14 C 1.50704 * 109.47527 * 66.04511 * 13 3 2 15 15 C 1.34472 * 126.42539 * 270.04176 * 14 13 3 16 16 C 1.50703 * 125.82417 * 0.02562 * 15 14 13 17 17 N 1.33830 * 108.34992 * 179.97438 * 15 14 13 18 18 C 1.32314 * 109.09530 * 359.97438 * 17 15 14 19 19 S 1.76242 * 142.33138 * 180.02562 * 18 17 15 20 20 C 1.75774 * 90.64376 * 179.97438 * 19 18 17 21 21 C 1.50701 * 124.86639 * 179.97438 * 20 19 18 22 22 N 1.27494 * 110.26621 * 359.76482 * 20 19 18 23 23 N 1.35157 * 108.84814 * 359.97438 * 18 17 15 24 24 H 1.09005 * 109.46761 * 171.10323 * 1 2 3 25 25 H 1.08996 * 109.47331 * 291.09946 * 1 2 3 26 26 H 1.08999 * 109.47128 * 51.10795 * 1 2 3 27 27 H 1.08998 * 109.46960 * 240.00124 * 2 1 3 28 28 H 1.08999 * 109.47277 * 119.99707 * 2 1 3 29 29 H 1.08999 * 109.47159 * 45.04496 * 4 3 2 30 30 H 1.09000 * 109.47491 * 165.04779 * 4 3 2 31 31 H 0.96995 * 120.00375 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47601 * 306.04244 * 13 3 2 33 33 H 1.09006 * 109.47138 * 186.04439 * 13 3 2 34 34 H 1.08999 * 109.46841 * 269.99777 * 16 15 14 35 35 H 1.09005 * 109.47052 * 29.99319 * 16 15 14 36 36 H 1.08994 * 109.47079 * 149.99491 * 16 15 14 37 37 H 1.09000 * 109.47164 * 0.02562 * 21 20 19 38 38 H 1.08999 * 109.47014 * 120.02745 * 21 20 19 39 39 H 1.09001 * 109.46835 * 240.02269 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7803 2.0281 1.2989 5 6 0.3184 2.3705 1.4280 6 1 -0.3583 2.1662 0.6114 7 6 -0.1553 2.9447 2.5886 8 7 -1.4310 3.2440 2.7011 9 14 1.0150 3.2974 4.0013 10 1 1.5773 4.6634 3.8489 11 1 0.2795 3.2054 5.2881 12 1 2.1185 2.3038 3.9897 13 6 3.4426 1.4403 -0.3605 14 6 3.6160 0.9987 -1.7909 15 6 3.8307 -0.2581 -2.2181 16 6 3.9401 -1.4804 -1.3435 17 7 3.9294 -0.2384 -3.5526 18 6 3.7812 1.0052 -3.9793 19 16 3.7502 1.9827 -5.4455 20 6 3.4667 3.4342 -4.4956 21 6 3.3089 4.8201 -5.0661 22 7 3.4095 3.1459 -3.2550 23 7 3.5822 1.8118 -2.9133 24 1 -0.3633 -1.0154 -0.1589 25 1 -0.3634 0.3699 0.9587 26 1 -0.3633 0.6452 -0.7999 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0658 1.3463 2.1000 30 1 2.3744 2.9393 1.3683 31 1 -1.7643 3.6476 3.5177 32 1 4.0095 0.7793 0.2950 33 1 3.8063 2.4619 -0.2490 34 1 4.9806 -1.6285 -1.0546 35 1 3.3309 -1.3436 -0.4500 36 1 3.5879 -2.3532 -1.8932 37 1 3.3974 4.7783 -6.1517 38 1 2.3293 5.2147 -4.7963 39 1 4.0858 5.4696 -4.6629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271048080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:46 Heat of formation + Delta-G solvation = 138.072428 kcal Electronic energy + Delta-G solvation = -21740.718527 eV Core-core repulsion = 18620.024974 eV Total energy + Delta-G solvation = -3120.693553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.50565 -38.23757 -37.08476 -32.99988 -32.68566 -31.46682 -30.36782 -29.37817 -27.98585 -26.48438 -24.56663 -23.38438 -22.16504 -20.59566 -20.16609 -19.83195 -18.50900 -16.81658 -16.51885 -16.07847 -15.07674 -14.85585 -14.58895 -14.18831 -13.96771 -13.81741 -13.39189 -13.17614 -13.08930 -13.06933 -12.55237 -12.42032 -12.17981 -11.94008 -11.80827 -11.47957 -11.11891 -10.96910 -10.75626 -10.60869 -10.52479 -10.30416 -10.08700 -9.99279 -9.71259 -9.06755 -9.05063 -8.52150 -7.92818 -7.42036 -6.04191 -3.99469 0.41844 0.77696 1.12547 1.80477 1.99090 2.76738 3.26952 3.34760 3.35801 3.91759 4.41382 4.43671 4.74170 4.79385 4.90283 5.04736 5.14738 5.25741 5.32270 5.41496 5.51101 5.66263 5.77129 5.87594 5.92399 5.93842 6.05259 6.22776 6.36699 6.54812 6.56921 6.73352 6.84643 7.02150 7.31396 7.43490 7.61145 7.66452 7.86351 8.00894 8.65846 9.06644 9.56621 11.07875 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.004777 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.319143 B = 5859.473140 C = 6713.444790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 N -0.523 5.523 4 C 0.162 3.838 5 C -0.505 4.505 6 H 0.093 0.907 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.870 3.130 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.122 3.878 14 C 0.060 3.940 15 C 0.033 3.967 16 C -0.076 4.076 17 N -0.434 5.434 18 C 0.095 3.905 19 S 0.150 5.850 20 C 0.089 3.911 21 C -0.071 4.071 22 N -0.226 5.226 23 N -0.296 5.296 24 H 0.031 0.969 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.025 0.975 29 H -0.005 1.005 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.404 -1.702 -14.694 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 N -0.247 5.247 4 C 0.036 3.964 5 C -0.543 4.543 6 H 0.111 0.889 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.697 3.303 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.008 4.008 14 C -0.056 4.056 15 C -0.099 4.099 16 C -0.134 4.134 17 N -0.159 5.159 18 C -0.272 4.272 19 S 0.385 5.615 20 C -0.210 4.210 21 C -0.132 4.132 22 N -0.038 5.038 23 N -0.072 5.072 24 H 0.050 0.950 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.012 0.988 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.121 -1.819 -15.689 19.909 hybrid contribution 0.781 0.390 2.525 2.672 sum 12.902 -1.428 -13.164 18.488 Atomic orbital electron populations 1.22067 0.94320 0.98730 1.05372 1.22226 0.97486 0.88759 0.98765 1.62025 1.11859 1.16898 1.33968 1.20270 0.98813 0.93275 0.84034 1.21229 0.91767 1.39253 1.02100 0.88939 1.24893 0.94891 0.95440 0.98128 1.69879 1.13146 1.43366 1.27519 0.86950 0.81630 0.79145 0.82563 1.20296 1.21221 1.19301 1.20509 0.92289 1.01436 0.86531 1.21160 1.08828 0.87553 0.88094 1.20538 1.05983 0.93565 0.89854 1.20393 1.02789 0.92601 0.97587 1.70399 1.20210 1.14710 1.10569 1.26333 1.14664 0.93141 0.93088 1.85145 1.80973 0.95035 1.00353 1.28455 0.99013 1.02339 0.91239 1.20570 1.05766 0.85844 1.00984 1.73750 1.18081 0.95344 1.16643 1.47566 1.50310 1.01611 1.07757 0.94996 0.88595 0.92949 0.91873 0.95679 0.98780 0.96120 0.92706 0.92676 0.89896 0.90907 0.89677 0.90384 0.88716 0.87813 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.52 37.16 0.32 -2.77 16 2 C 0.06 1.08 4.27 -3.82 -0.02 1.06 16 3 N -0.52 -11.22 4.48 -237.52 -1.06 -12.29 16 4 C 0.16 3.90 3.83 -4.98 -0.02 3.88 16 5 C -0.51 -14.05 7.50 -34.44 -0.26 -14.31 16 6 H 0.09 2.79 5.92 -52.49 -0.31 2.48 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 9 Si 0.87 21.24 27.51 -169.99 -4.68 16.57 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.29 6.48 56.52 0.37 -5.93 16 13 C 0.12 2.23 5.17 -4.98 -0.03 2.21 16 14 C 0.06 1.08 6.20 -80.84 -0.50 0.58 16 15 C 0.03 0.56 6.16 -83.05 -0.51 0.05 16 16 C -0.08 -0.99 9.34 36.01 0.34 -0.65 16 17 N -0.43 -7.69 11.32 -9.76 -0.11 -7.81 16 18 C 0.10 1.60 9.00 -88.74 -0.80 0.80 16 19 S 0.15 1.75 23.35 -107.50 -2.51 -0.76 16 20 C 0.09 1.03 7.58 -14.08 -0.11 0.92 16 21 C -0.07 -0.44 10.49 36.01 0.38 -0.06 16 22 N -0.23 -3.67 11.97 32.89 0.39 -3.27 16 23 N -0.30 -5.33 4.42 -8.73 -0.04 -5.37 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.10 2.30 5.63 -51.93 -0.29 2.01 16 26 H 0.05 1.17 7.77 -51.93 -0.40 0.77 16 27 H 0.06 1.14 4.23 -51.93 -0.22 0.92 16 28 H 0.03 0.47 7.61 -51.93 -0.40 0.07 16 29 H -0.01 -0.13 6.71 -51.93 -0.35 -0.48 16 30 H 0.02 0.50 7.29 -51.93 -0.38 0.12 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 33 H 0.08 1.55 7.83 -51.93 -0.41 1.14 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.11 4.91 -51.93 -0.26 0.85 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -34.21 324.05 -8.77 -42.99 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.12 Total: -2.03 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.30 Total: -6.47 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.05 Total: -55.17 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.68 Total: 16.57 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.51 Total: -0.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.21 -8.77 -42.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271048080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.060 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds