Wall clock time and date at job start Tue Mar 31 2020 07:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.46929 * 2 1 4 4 C 1.46897 * 111.00169 * 71.28548 * 3 2 1 5 5 C 1.50701 * 109.46836 * 285.04811 * 4 3 2 6 6 H 1.07999 * 120.00606 * 357.82115 * 5 4 3 7 7 C 1.37883 * 119.99927 * 177.82083 * 5 4 3 8 8 N 1.31511 * 120.00233 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99735 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46922 * 89.99830 * 9 7 5 11 11 H 1.48500 * 109.46964 * 209.99977 * 9 7 5 12 12 H 1.48494 * 109.46969 * 330.00153 * 9 7 5 13 13 C 1.46894 * 110.99888 * 195.24076 * 3 2 1 14 14 C 1.50704 * 109.47527 * 66.04511 * 13 3 2 15 15 C 1.34472 * 126.42539 * 270.04176 * 14 13 3 16 16 C 1.50703 * 125.82417 * 0.02562 * 15 14 13 17 17 N 1.33830 * 108.34992 * 179.97438 * 15 14 13 18 18 C 1.32314 * 109.09530 * 359.97438 * 17 15 14 19 19 S 1.76242 * 142.33138 * 180.02562 * 18 17 15 20 20 C 1.75774 * 90.64376 * 179.97438 * 19 18 17 21 21 C 1.50701 * 124.86639 * 179.97438 * 20 19 18 22 22 N 1.27494 * 110.26621 * 359.76482 * 20 19 18 23 23 N 1.35157 * 108.84814 * 359.97438 * 18 17 15 24 24 H 1.09005 * 109.46761 * 171.10323 * 1 2 3 25 25 H 1.08996 * 109.47331 * 291.09946 * 1 2 3 26 26 H 1.08999 * 109.47128 * 51.10795 * 1 2 3 27 27 H 1.08998 * 109.46960 * 240.00124 * 2 1 3 28 28 H 1.08999 * 109.47277 * 119.99707 * 2 1 3 29 29 H 1.08999 * 109.47159 * 45.04496 * 4 3 2 30 30 H 1.09000 * 109.47491 * 165.04779 * 4 3 2 31 31 H 0.96995 * 120.00375 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47601 * 306.04244 * 13 3 2 33 33 H 1.09006 * 109.47138 * 186.04439 * 13 3 2 34 34 H 1.08999 * 109.46841 * 269.99777 * 16 15 14 35 35 H 1.09005 * 109.47052 * 29.99319 * 16 15 14 36 36 H 1.08994 * 109.47079 * 149.99491 * 16 15 14 37 37 H 1.09000 * 109.47164 * 0.02562 * 21 20 19 38 38 H 1.08999 * 109.47014 * 120.02745 * 21 20 19 39 39 H 1.09001 * 109.46835 * 240.02269 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7803 2.0281 1.2989 5 6 0.3184 2.3705 1.4280 6 1 -0.3583 2.1662 0.6114 7 6 -0.1553 2.9447 2.5886 8 7 -1.4310 3.2440 2.7011 9 14 1.0150 3.2974 4.0013 10 1 1.5773 4.6634 3.8489 11 1 0.2795 3.2054 5.2881 12 1 2.1185 2.3038 3.9897 13 6 3.4426 1.4403 -0.3605 14 6 3.6160 0.9987 -1.7909 15 6 3.8307 -0.2581 -2.2181 16 6 3.9401 -1.4804 -1.3435 17 7 3.9294 -0.2384 -3.5526 18 6 3.7812 1.0052 -3.9793 19 16 3.7502 1.9827 -5.4455 20 6 3.4667 3.4342 -4.4956 21 6 3.3089 4.8201 -5.0661 22 7 3.4095 3.1459 -3.2550 23 7 3.5822 1.8118 -2.9133 24 1 -0.3633 -1.0154 -0.1589 25 1 -0.3634 0.3699 0.9587 26 1 -0.3633 0.6452 -0.7999 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0658 1.3463 2.1000 30 1 2.3744 2.9393 1.3683 31 1 -1.7643 3.6476 3.5177 32 1 4.0095 0.7793 0.2950 33 1 3.8063 2.4619 -0.2490 34 1 4.9806 -1.6285 -1.0546 35 1 3.3309 -1.3436 -0.4500 36 1 3.5879 -2.3532 -1.8932 37 1 3.3974 4.7783 -6.1517 38 1 2.3293 5.2147 -4.7963 39 1 4.0858 5.4696 -4.6629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271048080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:46 Heat of formation + Delta-G solvation = 113.840084 kcal Electronic energy + Delta-G solvation = -21741.769320 eV Core-core repulsion = 18620.024974 eV Total energy + Delta-G solvation = -3121.744346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.69013 -39.44479 -38.59688 -34.76804 -33.93499 -32.96179 -31.74908 -30.55743 -29.64969 -27.73987 -25.96647 -24.51844 -24.01064 -22.08134 -21.37969 -21.08551 -19.76518 -18.80847 -17.77544 -17.20168 -16.68830 -16.51147 -15.61288 -15.60186 -15.42947 -15.09229 -14.79834 -14.56782 -14.25069 -14.09327 -13.89713 -13.43495 -13.41885 -13.32437 -13.24603 -12.91835 -12.75346 -12.58199 -12.43515 -12.25716 -11.93973 -11.74183 -11.60091 -11.44207 -11.16571 -11.11800 -10.67179 -10.20727 -9.18272 -8.94628 -8.22563 -6.22664 -0.59433 -0.24653 0.08126 0.72088 0.84666 1.35208 1.35938 1.45818 1.53552 2.36415 2.83612 3.08759 3.21959 3.61904 3.67381 3.88103 3.96682 4.16776 4.26388 4.41551 4.48809 4.59507 4.60793 4.73108 4.74615 4.76022 4.85642 4.87400 4.95811 4.98180 5.03718 5.07248 5.24525 5.43764 5.55842 5.65613 5.98546 6.20689 6.33615 6.47681 6.63075 6.82474 7.37069 8.92772 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.004777 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.319143 B = 5859.473140 C = 6713.444790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.060 3.940 3 N -0.544 5.544 4 C 0.172 3.828 5 C -0.505 4.505 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.248 1.248 13 C 0.131 3.869 14 C 0.025 3.975 15 C 0.036 3.964 16 C -0.075 4.075 17 N -0.461 5.461 18 C 0.071 3.929 19 S 0.211 5.789 20 C 0.105 3.895 21 C -0.074 4.074 22 N -0.283 5.283 23 N -0.310 5.310 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.001 0.999 30 H 0.021 0.979 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.586 -1.835 -15.641 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 N -0.269 5.269 4 C 0.046 3.954 5 C -0.543 4.543 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.762 3.238 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.172 1.172 13 C 0.002 3.998 14 C -0.092 4.092 15 C -0.097 4.097 16 C -0.132 4.132 17 N -0.186 5.186 18 C -0.297 4.297 19 S 0.446 5.554 20 C -0.192 4.192 21 C -0.134 4.134 22 N -0.096 5.096 23 N -0.085 5.085 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.019 0.981 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.324 -1.958 -16.666 22.063 hybrid contribution 0.061 0.483 2.553 2.599 sum 14.385 -1.475 -14.113 20.206 Atomic orbital electron populations 1.21906 0.95867 0.99614 1.02174 1.22230 0.96001 0.88188 1.00284 1.61856 1.14610 1.18036 1.32434 1.20018 0.96021 0.93644 0.85749 1.21415 0.93400 1.38504 1.00975 0.92817 1.25746 0.96501 0.95393 1.01165 1.70036 1.15405 1.45002 1.28536 0.85850 0.79716 0.79523 0.78674 1.19668 1.20978 1.17192 1.20408 0.90304 1.01501 0.87583 1.21194 1.11469 0.88368 0.88119 1.21106 1.04409 0.94193 0.90016 1.20503 1.04306 0.91436 0.96975 1.70413 1.21767 1.15383 1.11084 1.27304 1.13870 0.93357 0.95127 1.84906 1.79718 0.93260 0.97529 1.29474 0.95259 1.04226 0.90274 1.20983 1.06530 0.82899 1.02998 1.73835 1.22026 0.94724 1.19013 1.47800 1.50117 1.02544 1.07997 0.92008 0.92174 0.95609 0.90060 0.94129 0.98132 0.96097 0.92660 0.90264 0.90950 0.88690 0.89644 0.89414 0.85080 0.87282 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 8.52 71.98 0.61 -5.29 16 2 C 0.06 2.31 4.27 86.30 0.37 2.68 16 3 N -0.54 -23.37 4.48 -905.37 -4.06 -27.43 16 4 C 0.17 8.26 3.83 85.56 0.33 8.59 16 5 C -0.50 -28.86 7.50 25.60 0.19 -28.67 16 6 H 0.05 3.42 5.92 -2.91 -0.02 3.41 16 7 C 0.01 0.51 5.47 84.66 0.46 0.97 16 8 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 9 Si 0.94 43.84 27.51 68.60 1.89 45.73 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.25 -10.71 6.48 99.48 0.64 -10.07 16 13 C 0.13 4.72 5.17 85.56 0.44 5.16 16 14 C 0.02 0.89 6.20 40.62 0.25 1.14 16 15 C 0.04 1.17 6.16 41.39 0.26 1.43 16 16 C -0.07 -1.79 9.34 71.24 0.67 -1.13 16 17 N -0.46 -16.00 11.32 -184.79 -2.09 -18.09 16 18 C 0.07 2.32 9.00 179.69 1.62 3.94 16 19 S 0.21 4.49 23.35 -56.49 -1.32 3.17 16 20 C 0.11 2.25 7.58 88.74 0.67 2.93 16 21 C -0.07 -0.70 10.49 71.24 0.75 0.05 16 22 N -0.28 -9.05 11.97 -49.04 -0.59 -9.64 16 23 N -0.31 -11.09 4.42 -181.54 -0.80 -11.89 16 24 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 25 H 0.06 3.00 5.63 -2.39 -0.01 2.98 16 26 H 0.02 1.19 7.77 -2.39 -0.02 1.17 16 27 H 0.08 2.84 4.23 -2.39 -0.01 2.83 16 28 H 0.04 1.44 7.61 -2.39 -0.02 1.42 16 29 H 0.00 0.05 6.71 -2.39 -0.02 0.03 16 30 H 0.02 1.00 7.29 -2.39 -0.02 0.98 16 31 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.08 2.42 7.75 -2.39 -0.02 2.41 16 33 H 0.07 2.71 7.83 -2.38 -0.02 2.69 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 2.03 4.91 -2.38 -0.01 2.02 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.12 0.82 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -77.63 324.05 0.96 -76.67 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.01 Total: 8.59 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 6.62 Total: -8.21 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -7.24 Total: -125.95 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.89 Total: 45.73 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.32 Total: 3.17 kcal Total: -77.63 0.96 -76.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271048080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.512 kcal (2) G-P(sol) polarization free energy of solvation -77.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds