Wall clock time and date at job start Tue Mar 31 2020 06:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09000 * 109.46822 * 179.24700 * 3 2 1 5 5 C 1.50700 * 109.47332 * 299.24313 * 3 2 1 6 6 H 1.07995 * 119.99824 * 119.99864 * 5 3 2 7 7 C 1.37878 * 119.99886 * 300.00255 * 5 3 2 8 8 N 1.31512 * 119.99696 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 120.00037 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47402 * 89.99946 * 9 7 5 11 11 H 1.48508 * 109.47149 * 209.99526 * 9 7 5 12 12 H 1.48493 * 109.47446 * 329.99683 * 9 7 5 13 13 N 1.46892 * 109.47330 * 59.24752 * 3 2 1 14 14 C 1.46901 * 111.00589 * 85.92887 * 13 3 2 15 15 C 1.50695 * 109.47564 * 175.54953 * 14 13 3 16 16 C 1.34471 * 126.42779 * 269.69161 * 15 14 13 17 17 C 1.50704 * 125.82111 * 359.96128 * 16 15 14 18 18 N 1.33827 * 108.35377 * 179.81844 * 16 15 14 19 19 C 1.32317 * 109.08994 * 0.46369 * 18 16 15 20 20 S 1.76247 * 142.33336 * 179.73295 * 19 18 16 21 21 C 1.75766 * 90.64810 * 179.97438 * 20 19 18 22 22 C 1.50701 * 124.86808 * 179.97438 * 21 20 19 23 23 N 1.27496 * 110.26444 * 0.02562 * 21 20 19 24 24 N 1.35155 * 108.85097 * 359.70501 * 19 18 16 25 25 H 1.09003 * 109.47400 * 295.56355 * 1 2 3 26 26 H 1.08994 * 109.47237 * 175.55819 * 1 2 3 27 27 H 1.09007 * 109.47167 * 55.55879 * 1 2 3 28 28 H 1.08998 * 109.46648 * 120.00092 * 2 1 3 29 29 H 1.09002 * 109.46932 * 239.99967 * 2 1 3 30 30 H 0.97004 * 119.99882 * 180.02562 * 8 7 5 31 31 H 1.00901 * 111.00536 * 209.88759 * 13 3 2 32 32 H 1.08998 * 109.46976 * 295.55706 * 14 13 3 33 33 H 1.09004 * 109.46501 * 55.55076 * 14 13 3 34 34 H 1.09001 * 109.46641 * 90.00004 * 17 16 15 35 35 H 1.09003 * 109.46843 * 209.99929 * 17 16 15 36 36 H 1.08999 * 109.46936 * 329.99874 * 17 16 15 37 37 H 1.08999 * 109.46757 * 0.02562 * 22 21 20 38 38 H 1.09001 * 109.46691 * 120.03161 * 22 21 20 39 39 H 1.09000 * 109.46753 * 240.02636 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0135 5 6 1.5530 2.1475 -1.2397 6 1 0.9310 3.0260 -1.1522 7 6 1.9017 1.6710 -2.4857 8 7 1.4763 2.2859 -3.5675 9 14 2.9770 0.1511 -2.6370 10 1 2.1185 -1.0596 -2.6880 11 1 3.7846 0.2379 -3.8802 12 1 3.8826 0.0665 -1.4633 13 7 1.5355 2.1402 1.1902 14 6 2.4168 1.9175 2.3442 15 6 1.9295 2.7338 3.5134 16 6 2.2989 3.9899 3.8196 17 6 3.2808 4.8335 3.0478 18 7 1.6436 4.3644 4.9248 19 6 0.8742 3.3673 5.3304 20 16 -0.2746 2.9139 6.5878 21 6 -0.4766 1.3273 5.8590 22 6 -1.3796 0.2439 6.3901 23 7 0.2511 1.2239 4.8173 24 7 1.0207 2.3282 4.4786 25 1 -0.3634 0.4435 0.9271 26 1 -0.3633 -1.0245 -0.0796 27 1 -0.3634 0.5812 -0.8476 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.7212 1.9504 -4.4441 31 1 1.4189 3.1260 1.0092 32 1 2.4074 0.8604 2.6098 33 1 3.4328 2.2190 2.0889 34 1 2.7496 5.4031 2.2853 35 1 3.7844 5.5194 3.7290 36 1 4.0184 4.1878 2.5712 37 1 -1.8827 0.5989 7.2895 38 1 -2.1228 -0.0121 5.6349 39 1 -0.7863 -0.6384 6.6298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273824779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:42 Heat of formation + Delta-G solvation = 124.641967 kcal Electronic energy + Delta-G solvation = -21526.351969 eV Core-core repulsion = 18405.076028 eV Total energy + Delta-G solvation = -3121.275941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.50726 -38.15315 -36.66947 -33.24485 -32.92566 -31.67530 -30.36910 -29.56489 -27.35928 -26.23293 -24.46748 -23.32264 -23.11313 -20.45027 -20.14840 -19.41242 -18.62420 -16.58484 -16.49563 -16.20695 -15.45688 -14.63770 -14.45973 -14.24540 -13.90778 -13.71303 -13.34600 -13.16840 -13.08344 -13.02279 -12.72385 -12.44565 -12.33139 -12.06756 -11.83032 -11.75012 -11.14870 -10.84323 -10.70254 -10.58590 -10.43273 -10.22815 -10.01180 -9.98058 -9.35815 -9.09730 -8.99402 -8.60228 -7.96830 -7.53630 -6.12262 -4.11488 0.37028 0.71970 1.07991 1.76305 1.93333 2.76338 3.25281 3.34258 3.36176 3.87582 4.36155 4.37782 4.73086 4.85014 4.96849 4.99830 5.19259 5.27664 5.36123 5.39451 5.48439 5.75791 5.89045 5.92976 5.98971 6.11063 6.19551 6.24900 6.44351 6.54956 6.69000 6.87893 7.08159 7.19044 7.27046 7.45939 7.56251 7.64689 7.84428 8.26361 8.56114 8.92060 9.49699 11.00490 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.004416 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.789893 B = 6339.393468 C = 7207.805869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 C 0.187 3.813 4 H 0.003 0.997 5 C -0.514 4.514 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.669 5.669 14 C 0.129 3.871 15 C 0.050 3.950 16 C 0.037 3.963 17 C -0.067 4.067 18 N -0.434 5.434 19 C 0.095 3.905 20 S 0.152 5.848 21 C 0.087 3.913 22 C -0.070 4.070 23 N -0.228 5.228 24 N -0.297 5.297 25 H 0.052 0.948 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.042 0.958 30 H 0.264 0.736 31 H 0.342 0.658 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 -2.392 20.942 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.078 3.922 4 H 0.021 0.979 5 C -0.552 4.552 6 H 0.097 0.903 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.301 5.301 14 C -0.001 4.001 15 C -0.066 4.066 16 C -0.096 4.096 17 C -0.125 4.125 18 N -0.158 5.158 19 C -0.272 4.272 20 S 0.387 5.613 21 C -0.212 4.212 22 C -0.131 4.131 23 N -0.040 5.040 24 N -0.074 5.074 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.161 0.839 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.045 -2.250 21.531 21.861 hybrid contribution 1.540 -1.121 -1.402 2.365 sum -1.505 -3.371 20.128 20.464 Atomic orbital electron populations 1.21446 0.95561 0.98258 1.02781 1.21743 0.97427 0.98100 0.97750 1.19609 0.92948 0.91314 0.88332 0.97922 1.20982 1.32584 1.13314 0.88303 0.90326 1.24872 0.95463 0.96707 0.95690 1.69884 1.45286 1.40424 0.97846 0.86874 0.80832 0.83811 0.76838 1.20413 1.22501 1.19386 1.60579 1.48183 1.16899 1.04423 1.20416 0.94576 0.98036 0.87083 1.21244 0.95380 0.96182 0.93768 1.20644 1.01674 0.92150 0.95126 1.20161 0.95639 0.98290 0.98406 1.70422 1.08639 1.24277 1.12507 1.26345 1.09060 0.91170 1.00661 1.85175 1.42456 1.08651 1.25046 1.28438 0.98970 0.99986 0.93813 1.20562 0.96890 0.93687 1.01992 1.73718 1.06616 1.08065 1.15615 1.47580 1.31173 1.07241 1.21375 0.92930 0.96143 0.91368 0.95195 0.93994 0.92559 0.83887 0.90565 0.92780 0.90159 0.90666 0.90478 0.88695 0.87924 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16 2 C -0.11 -2.52 5.29 -26.73 -0.14 -2.66 16 3 C 0.19 4.33 1.89 -68.87 -0.13 4.20 16 4 H 0.00 0.08 6.77 -51.93 -0.35 -0.27 16 5 C -0.51 -13.92 7.87 -34.44 -0.27 -14.19 16 6 H 0.08 2.32 7.85 -52.49 -0.41 1.91 16 7 C 0.08 2.11 5.45 -17.82 -0.10 2.02 16 8 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.89 21.79 24.38 -169.99 -4.14 17.65 16 10 H -0.28 -6.73 6.86 56.52 0.39 -6.34 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 13 N -0.67 -13.75 5.61 -109.23 -0.61 -14.36 16 14 C 0.13 2.30 5.86 -4.98 -0.03 2.27 16 15 C 0.05 0.87 6.73 -80.85 -0.54 0.33 16 16 C 0.04 0.61 7.06 -83.05 -0.59 0.02 16 17 C -0.07 -0.89 10.21 36.01 0.37 -0.52 16 18 N -0.43 -7.57 11.32 -9.76 -0.11 -7.68 16 19 C 0.10 1.55 9.00 -88.74 -0.80 0.75 16 20 S 0.15 1.68 23.35 -107.50 -2.51 -0.83 16 21 C 0.09 0.93 7.58 -14.08 -0.11 0.82 16 22 C -0.07 -0.38 10.49 36.01 0.38 0.00 16 23 N -0.23 -3.45 11.97 32.89 0.39 -3.05 16 24 N -0.30 -5.10 4.41 -8.73 -0.04 -5.14 16 25 H 0.05 1.12 7.73 -51.93 -0.40 0.72 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 1.64 7.09 -51.93 -0.37 1.27 16 28 H 0.03 0.61 7.62 -51.93 -0.40 0.22 16 29 H 0.04 0.99 3.26 -51.93 -0.17 0.82 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.34 7.15 8.13 -39.29 -0.32 6.83 16 32 H 0.08 1.39 7.62 -51.93 -0.40 1.00 16 33 H 0.05 0.89 6.93 -51.93 -0.36 0.53 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.94 7.12 -51.93 -0.37 0.57 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -33.21 329.75 -8.15 -41.35 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.26 Total: 2.45 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -1.61 Total: -9.27 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.41 Total: -56.32 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.51 Total: -0.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.21 -8.15 -41.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273824779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.995 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds