Wall clock time and date at job start Tue Mar 31 2020 06:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09000 * 109.46822 * 179.24700 * 3 2 1 5 5 C 1.50700 * 109.47332 * 299.24313 * 3 2 1 6 6 H 1.07995 * 119.99824 * 119.99864 * 5 3 2 7 7 C 1.37878 * 119.99886 * 300.00255 * 5 3 2 8 8 N 1.31512 * 119.99696 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 120.00037 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47402 * 89.99946 * 9 7 5 11 11 H 1.48508 * 109.47149 * 209.99526 * 9 7 5 12 12 H 1.48493 * 109.47446 * 329.99683 * 9 7 5 13 13 N 1.46892 * 109.47330 * 59.24752 * 3 2 1 14 14 C 1.46901 * 111.00589 * 85.92887 * 13 3 2 15 15 C 1.50695 * 109.47564 * 175.54953 * 14 13 3 16 16 C 1.34471 * 126.42779 * 269.69161 * 15 14 13 17 17 C 1.50704 * 125.82111 * 359.96128 * 16 15 14 18 18 N 1.33827 * 108.35377 * 179.81844 * 16 15 14 19 19 C 1.32317 * 109.08994 * 0.46369 * 18 16 15 20 20 S 1.76247 * 142.33336 * 179.73295 * 19 18 16 21 21 C 1.75766 * 90.64810 * 179.97438 * 20 19 18 22 22 C 1.50701 * 124.86808 * 179.97438 * 21 20 19 23 23 N 1.27496 * 110.26444 * 0.02562 * 21 20 19 24 24 N 1.35155 * 108.85097 * 359.70501 * 19 18 16 25 25 H 1.09003 * 109.47400 * 295.56355 * 1 2 3 26 26 H 1.08994 * 109.47237 * 175.55819 * 1 2 3 27 27 H 1.09007 * 109.47167 * 55.55879 * 1 2 3 28 28 H 1.08998 * 109.46648 * 120.00092 * 2 1 3 29 29 H 1.09002 * 109.46932 * 239.99967 * 2 1 3 30 30 H 0.97004 * 119.99882 * 180.02562 * 8 7 5 31 31 H 1.00901 * 111.00536 * 209.88759 * 13 3 2 32 32 H 1.08998 * 109.46976 * 295.55706 * 14 13 3 33 33 H 1.09004 * 109.46501 * 55.55076 * 14 13 3 34 34 H 1.09001 * 109.46641 * 90.00004 * 17 16 15 35 35 H 1.09003 * 109.46843 * 209.99929 * 17 16 15 36 36 H 1.08999 * 109.46936 * 329.99874 * 17 16 15 37 37 H 1.08999 * 109.46757 * 0.02562 * 22 21 20 38 38 H 1.09001 * 109.46691 * 120.03161 * 22 21 20 39 39 H 1.09000 * 109.46753 * 240.02636 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0135 5 6 1.5530 2.1475 -1.2397 6 1 0.9310 3.0260 -1.1522 7 6 1.9017 1.6710 -2.4857 8 7 1.4763 2.2859 -3.5675 9 14 2.9770 0.1511 -2.6370 10 1 2.1185 -1.0596 -2.6880 11 1 3.7846 0.2379 -3.8802 12 1 3.8826 0.0665 -1.4633 13 7 1.5355 2.1402 1.1902 14 6 2.4168 1.9175 2.3442 15 6 1.9295 2.7338 3.5134 16 6 2.2989 3.9899 3.8196 17 6 3.2808 4.8335 3.0478 18 7 1.6436 4.3644 4.9248 19 6 0.8742 3.3673 5.3304 20 16 -0.2746 2.9139 6.5878 21 6 -0.4766 1.3273 5.8590 22 6 -1.3796 0.2439 6.3901 23 7 0.2511 1.2239 4.8173 24 7 1.0207 2.3282 4.4786 25 1 -0.3634 0.4435 0.9271 26 1 -0.3633 -1.0245 -0.0796 27 1 -0.3634 0.5812 -0.8476 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.7212 1.9504 -4.4441 31 1 1.4189 3.1260 1.0092 32 1 2.4074 0.8604 2.6098 33 1 3.4328 2.2190 2.0889 34 1 2.7496 5.4031 2.2853 35 1 3.7844 5.5194 3.7290 36 1 4.0184 4.1878 2.5712 37 1 -1.8827 0.5989 7.2895 38 1 -2.1228 -0.0121 5.6349 39 1 -0.7863 -0.6384 6.6298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273824779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:42 Heat of formation + Delta-G solvation = 101.132116 kcal Electronic energy + Delta-G solvation = -21527.371433 eV Core-core repulsion = 18405.076028 eV Total energy + Delta-G solvation = -3122.295405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.65621 -39.21096 -38.37540 -34.94090 -33.90708 -33.57387 -31.68620 -30.51954 -28.96306 -27.58160 -25.84806 -25.00444 -24.42210 -21.61163 -21.24519 -21.15037 -19.80769 -18.54204 -17.65347 -17.49767 -17.10048 -15.80248 -15.62914 -15.57596 -15.41263 -15.06826 -14.88802 -14.68140 -14.28170 -14.02771 -13.91057 -13.80191 -13.43689 -13.30866 -13.11026 -12.93619 -12.72987 -12.62749 -12.48029 -12.11652 -11.86412 -11.73565 -11.51309 -11.27289 -11.16689 -10.98297 -10.70771 -10.20456 -9.27267 -8.99640 -8.29508 -6.32420 -0.59916 -0.24580 0.08916 0.72956 0.82743 1.31066 1.34550 1.44413 1.53820 2.31114 2.83774 3.06305 3.48068 3.62377 3.69551 3.91783 4.04948 4.19252 4.30225 4.41191 4.49239 4.61559 4.65858 4.66509 4.76885 4.86744 4.89188 4.90343 4.96445 5.07938 5.11245 5.28128 5.34687 5.42507 5.58215 5.69752 5.94490 6.20526 6.41143 6.49816 6.58486 6.77855 7.32598 8.86890 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.004416 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.789893 B = 6339.393468 C = 7207.805869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.114 4.114 3 C 0.193 3.807 4 H 0.003 0.997 5 C -0.508 4.508 6 H 0.039 0.961 7 C 0.022 3.978 8 N -0.945 5.945 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.298 1.298 12 H -0.249 1.249 13 N -0.671 5.671 14 C 0.140 3.860 15 C 0.021 3.979 16 C 0.034 3.966 17 C -0.066 4.066 18 N -0.464 5.464 19 C 0.072 3.928 20 S 0.209 5.791 21 C 0.106 3.894 22 C -0.073 4.073 23 N -0.278 5.278 24 N -0.308 5.308 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.266 0.734 31 H 0.337 0.663 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 -4.317 23.481 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.152 4.152 3 C 0.084 3.916 4 H 0.021 0.979 5 C -0.547 4.547 6 H 0.057 0.943 7 C -0.176 4.176 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.226 1.226 12 H -0.173 1.173 13 N -0.303 5.303 14 C 0.010 3.990 15 C -0.095 4.095 16 C -0.100 4.100 17 C -0.123 4.123 18 N -0.190 5.190 19 C -0.296 4.296 20 S 0.444 5.556 21 C -0.192 4.192 22 C -0.134 4.134 23 N -0.091 5.091 24 N -0.083 5.083 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.147 0.853 38 H 0.131 0.869 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.195 -4.184 24.110 24.678 hybrid contribution 1.410 -0.471 -1.995 2.488 sum -1.785 -4.655 22.115 22.670 Atomic orbital electron populations 1.21314 0.95273 0.99218 1.01225 1.21729 0.97689 0.97236 0.98497 1.19439 0.92699 0.91872 0.87636 0.97904 1.21159 1.31184 1.12114 0.90207 0.94294 1.25638 0.96927 0.99736 0.95274 1.70026 1.47410 1.42545 0.98502 0.85941 0.79461 0.80260 0.77334 1.19478 1.22617 1.17306 1.60510 1.49157 1.16316 1.04290 1.20284 0.94617 0.97966 0.86111 1.21177 0.97078 0.96756 0.94520 1.21114 1.01612 0.92232 0.94997 1.20245 0.95320 0.98373 0.98400 1.70416 1.09948 1.25238 1.13379 1.27325 1.09420 0.90891 1.01935 1.84976 1.39982 1.08015 1.22597 1.29493 0.97049 1.00694 0.91929 1.20988 0.96366 0.92675 1.03329 1.73823 1.08986 1.07926 1.18323 1.47782 1.31195 1.08077 1.21268 0.92972 0.93585 0.94639 0.92777 0.94657 0.92527 0.84517 0.90891 0.91503 0.90297 0.89279 0.89532 0.85282 0.86929 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 9.52 71.98 0.69 -4.09 16 2 C -0.11 -4.88 5.29 30.60 0.16 -4.72 16 3 C 0.19 8.85 1.89 44.17 0.08 8.94 16 4 H 0.00 0.16 6.77 -2.39 -0.02 0.14 16 5 C -0.51 -28.19 7.87 25.60 0.20 -27.99 16 6 H 0.04 2.42 7.85 -2.91 -0.02 2.39 16 7 C 0.02 1.27 5.45 84.66 0.46 1.73 16 8 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 9 Si 0.94 44.47 24.38 68.60 1.67 46.14 16 10 H -0.27 -12.24 6.86 99.48 0.68 -11.55 16 11 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.25 -10.88 6.53 99.48 0.65 -10.23 16 13 N -0.67 -27.69 5.61 -499.48 -2.80 -30.49 16 14 C 0.14 4.92 5.86 85.56 0.50 5.42 16 15 C 0.02 0.72 6.73 40.62 0.27 1.00 16 16 C 0.03 1.12 7.06 41.39 0.29 1.41 16 17 C -0.07 -1.73 10.21 71.24 0.73 -1.00 16 18 N -0.46 -16.20 11.32 -184.78 -2.09 -18.30 16 19 C 0.07 2.29 9.00 179.69 1.62 3.91 16 20 S 0.21 4.16 23.35 -56.49 -1.32 2.84 16 21 C 0.11 2.00 7.58 88.74 0.67 2.67 16 22 C -0.07 -0.49 10.49 71.24 0.75 0.26 16 23 N -0.28 -8.00 11.97 -49.04 -0.59 -8.59 16 24 N -0.31 -10.43 4.41 -181.55 -0.80 -11.23 16 25 H 0.05 2.18 7.73 -2.39 -0.02 2.16 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.03 1.70 7.09 -2.38 -0.02 1.69 16 28 H 0.05 2.07 7.62 -2.39 -0.02 2.05 16 29 H 0.04 1.57 3.26 -2.39 -0.01 1.56 16 30 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 31 H 0.34 14.49 8.13 -89.69 -0.73 13.76 16 32 H 0.07 2.59 7.62 -2.39 -0.02 2.57 16 33 H 0.07 2.15 6.93 -2.38 -0.02 2.14 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 2.06 7.12 -2.39 -0.02 2.05 16 37 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -74.17 329.75 1.06 -73.11 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.27 Total: 16.93 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 6.43 Total: -12.48 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -5.98 Total: -126.54 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.67 Total: 46.14 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.32 Total: 2.84 kcal Total: -74.17 1.06 -73.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273824779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.240 kcal (2) G-P(sol) polarization free energy of solvation -74.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds