Wall clock time and date at job start Tue Mar 31 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47336 * 2 1 4 4 H 1.09000 * 109.47278 * 179.17111 * 3 2 1 5 5 C 1.50700 * 109.46776 * 59.17358 * 3 2 1 6 6 H 1.08004 * 120.00125 * 240.00565 * 5 3 2 7 7 C 1.37879 * 120.00147 * 60.00212 * 5 3 2 8 8 N 1.31506 * 119.99762 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99924 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47282 * 89.99939 * 9 7 5 11 11 H 1.48505 * 109.46797 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.47304 * 329.99674 * 9 7 5 13 13 N 1.46895 * 109.47121 * 299.17774 * 3 2 1 14 14 C 1.46908 * 110.99840 * 273.74552 * 13 3 2 15 15 C 1.50697 * 109.47267 * 174.29344 * 14 13 3 16 16 C 1.34477 * 126.42684 * 269.69071 * 15 14 13 17 17 C 1.50696 * 125.81940 * 359.96296 * 16 15 14 18 18 N 1.33826 * 108.34782 * 179.81665 * 16 15 14 19 19 C 1.32315 * 109.09721 * 0.46330 * 18 16 15 20 20 S 1.76247 * 142.33363 * 179.72746 * 19 18 16 21 21 C 1.75770 * 90.64258 * 179.97438 * 20 19 18 22 22 C 1.50706 * 124.86447 * 179.97438 * 21 20 19 23 23 N 1.27479 * 110.26838 * 0.02562 * 21 20 19 24 24 N 1.35155 * 108.84916 * 359.70700 * 19 18 16 25 25 H 1.09000 * 109.47603 * 298.43238 * 1 2 3 26 26 H 1.08998 * 109.47303 * 58.43208 * 1 2 3 27 27 H 1.09004 * 109.47127 * 178.43269 * 1 2 3 28 28 H 1.09007 * 109.47327 * 240.00068 * 2 1 3 29 29 H 1.09000 * 109.47385 * 120.00098 * 2 1 3 30 30 H 0.97003 * 119.99553 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00395 * 149.79697 * 13 3 2 32 32 H 1.09001 * 109.46668 * 294.29910 * 14 13 3 33 33 H 1.08996 * 109.46910 * 54.29449 * 14 13 3 34 34 H 1.08998 * 109.47440 * 90.00378 * 17 16 15 35 35 H 1.09007 * 109.46730 * 210.00044 * 17 16 15 36 36 H 1.09000 * 109.47641 * 329.99360 * 17 16 15 37 37 H 1.08997 * 109.47044 * 0.02562 * 22 21 20 38 38 H 1.08993 * 109.47156 * 120.03088 * 22 21 20 39 39 H 1.09001 * 109.46822 * 240.02790 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0149 5 6 1.5210 2.1587 1.2201 6 1 0.9014 3.0363 1.1084 7 6 1.8370 1.6937 2.4791 8 7 2.5909 0.6248 2.6151 9 14 1.1930 2.5812 3.9914 10 1 -0.1204 2.0075 4.3802 11 1 2.1560 2.4159 5.1098 12 1 1.0316 4.0255 3.6866 13 7 1.5666 2.1292 -1.2092 14 6 2.4817 1.9022 -2.3358 15 6 1.8952 2.5014 -3.5880 16 6 1.0917 1.8805 -4.4698 17 6 0.6178 0.4530 -4.3778 18 7 0.7824 2.7477 -5.4410 19 6 1.3816 3.9020 -5.1976 20 16 1.5852 5.5308 -5.8394 21 6 2.6264 5.9544 -4.4881 22 6 3.2718 7.3014 -4.2871 23 7 2.7582 4.9587 -3.7031 24 7 2.0875 3.7942 -4.0502 25 1 -0.3634 0.4893 0.9037 26 1 -0.3634 0.5380 -0.8756 27 1 -0.3633 -1.0273 -0.0281 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8129 0.2975 3.5008 31 1 1.4406 3.1157 -1.0390 32 1 3.4424 2.3716 -2.1238 33 1 2.6242 0.8310 -2.4779 34 1 -0.3194 0.4163 -3.8224 35 1 0.4612 0.0568 -5.3812 36 1 1.3686 -0.1468 -3.8635 37 1 2.9917 7.9643 -5.1057 38 1 2.9351 7.7282 -3.3424 39 1 4.3555 7.1857 -4.2677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273824782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:45 Heat of formation + Delta-G solvation = 116.229715 kcal Electronic energy + Delta-G solvation = -21445.761392 eV Core-core repulsion = 18324.120668 eV Total energy + Delta-G solvation = -3121.640724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.43427 -38.09381 -36.36152 -33.13933 -32.90415 -31.25967 -30.23744 -29.41827 -27.08079 -26.00385 -24.38743 -23.33308 -22.99275 -20.39166 -20.05533 -19.08331 -18.54001 -16.47008 -16.42138 -16.09399 -14.95859 -14.60465 -14.41361 -14.22704 -13.97523 -13.46240 -13.25584 -13.11328 -12.96861 -12.84369 -12.35883 -12.31057 -11.99901 -11.82761 -11.76014 -11.33060 -10.95686 -10.81607 -10.78247 -10.47644 -10.38494 -10.10921 -10.02362 -9.72791 -9.38912 -9.02125 -8.82107 -8.49939 -7.86596 -7.31846 -6.04454 -4.09751 0.40712 0.75373 1.11335 1.80402 1.97629 2.87886 3.27876 3.34585 3.37441 3.93055 4.38327 4.41101 4.78492 4.95667 4.98178 5.18825 5.26757 5.36707 5.38317 5.52570 5.67450 5.90706 6.00351 6.10575 6.13599 6.32184 6.51900 6.67215 6.69585 6.84879 7.22345 7.23768 7.32158 7.47033 7.72561 7.73331 7.76512 7.80953 8.20706 8.32651 8.58588 8.97584 9.54857 11.01454 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.004419 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.972032 B = 6334.850713 C = 7507.553800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.676 5.676 14 C 0.133 3.867 15 C 0.052 3.948 16 C 0.048 3.952 17 C -0.060 4.060 18 N -0.435 5.435 19 C 0.093 3.907 20 S 0.151 5.849 21 C 0.088 3.912 22 C -0.071 4.071 23 N -0.236 5.236 24 N -0.307 5.307 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.014 0.986 28 H 0.011 0.989 29 H 0.087 0.913 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 9.398 -15.538 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.307 5.307 14 C 0.002 3.998 15 C -0.063 4.063 16 C -0.085 4.085 17 C -0.118 4.118 18 N -0.160 5.160 19 C -0.275 4.275 20 S 0.386 5.614 21 C -0.211 4.211 22 C -0.132 4.132 23 N -0.048 5.048 24 N -0.084 5.084 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.336 8.926 -16.337 18.620 hybrid contribution 0.941 0.683 2.220 2.506 sum 1.277 9.609 -14.118 17.125 Atomic orbital electron populations 1.21442 0.97413 0.97251 1.01599 1.21431 0.95154 0.97934 0.99473 1.19160 0.93195 0.91666 0.85019 0.98087 1.21139 1.31702 1.11976 0.90268 0.92455 1.24858 0.95000 0.95013 0.98825 1.69877 1.36902 1.22844 1.23029 0.86574 0.78723 0.80006 0.82565 1.20572 1.21280 1.20075 1.60759 1.47303 1.16342 1.06297 1.20364 0.93438 0.99602 0.86380 1.21423 1.05146 0.79078 1.00625 1.20580 0.99043 0.97396 0.91433 1.20094 1.02092 0.87178 1.02449 1.70416 1.22114 0.96986 1.26457 1.26283 1.05139 1.02253 0.93802 1.85138 1.52825 0.98072 1.25406 1.28403 0.99111 0.99409 0.94132 1.20564 1.01463 0.86075 1.05055 1.73662 1.15785 0.92003 1.23342 1.47706 1.34031 1.08578 1.18129 0.92871 0.93561 0.96712 0.97041 0.89493 0.92923 0.85217 0.94996 0.88743 0.90181 0.91181 0.90447 0.88685 0.87962 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.50 37.15 0.35 -2.30 16 2 C -0.10 -2.40 5.58 -26.73 -0.15 -2.55 16 3 C 0.22 5.33 2.30 -68.87 -0.16 5.17 16 4 H 0.00 0.04 7.84 -51.93 -0.41 -0.37 16 5 C -0.51 -13.72 7.31 -34.44 -0.25 -13.98 16 6 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 7 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 8 N -0.89 -24.83 11.33 55.43 0.63 -24.20 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -14.53 5.51 -109.22 -0.60 -15.13 16 14 C 0.13 2.52 5.78 -4.97 -0.03 2.49 16 15 C 0.05 0.96 6.82 -80.84 -0.55 0.40 16 16 C 0.05 0.84 7.06 -83.05 -0.59 0.25 16 17 C -0.06 -0.86 10.21 36.00 0.37 -0.49 16 18 N -0.43 -7.86 11.32 -9.76 -0.11 -7.97 16 19 C 0.09 1.55 9.00 -88.74 -0.80 0.76 16 20 S 0.15 1.72 23.35 -107.50 -2.51 -0.79 16 21 C 0.09 0.98 7.58 -14.08 -0.11 0.87 16 22 C -0.07 -0.40 10.49 36.01 0.38 -0.02 16 23 N -0.24 -3.65 11.97 32.87 0.39 -3.26 16 24 N -0.31 -5.43 4.42 -8.73 -0.04 -5.47 16 25 H 0.05 1.28 7.25 -51.93 -0.38 0.91 16 26 H 0.05 0.99 7.58 -51.93 -0.39 0.60 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.01 0.24 7.45 -51.93 -0.39 -0.15 16 29 H 0.09 2.29 6.09 -51.93 -0.32 1.98 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.33 7.43 8.25 -39.29 -0.32 7.11 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.70 6.38 -51.93 -0.33 1.37 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.04 7.12 -51.93 -0.37 0.67 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -31.60 336.56 -9.22 -40.82 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.40 Total: 2.52 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.63 Total: -7.72 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.27 Total: -56.03 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.51 Total: -0.79 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.60 -9.22 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273824782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.050 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds