Wall clock time and date at job start Tue Mar 31 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47336 * 2 1 4 4 H 1.09000 * 109.47278 * 179.17111 * 3 2 1 5 5 C 1.50700 * 109.46776 * 59.17358 * 3 2 1 6 6 H 1.08004 * 120.00125 * 240.00565 * 5 3 2 7 7 C 1.37879 * 120.00147 * 60.00212 * 5 3 2 8 8 N 1.31506 * 119.99762 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99924 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47282 * 89.99939 * 9 7 5 11 11 H 1.48505 * 109.46797 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.47304 * 329.99674 * 9 7 5 13 13 N 1.46895 * 109.47121 * 299.17774 * 3 2 1 14 14 C 1.46908 * 110.99840 * 273.74552 * 13 3 2 15 15 C 1.50697 * 109.47267 * 174.29344 * 14 13 3 16 16 C 1.34477 * 126.42684 * 269.69071 * 15 14 13 17 17 C 1.50696 * 125.81940 * 359.96296 * 16 15 14 18 18 N 1.33826 * 108.34782 * 179.81665 * 16 15 14 19 19 C 1.32315 * 109.09721 * 0.46330 * 18 16 15 20 20 S 1.76247 * 142.33363 * 179.72746 * 19 18 16 21 21 C 1.75770 * 90.64258 * 179.97438 * 20 19 18 22 22 C 1.50706 * 124.86447 * 179.97438 * 21 20 19 23 23 N 1.27479 * 110.26838 * 0.02562 * 21 20 19 24 24 N 1.35155 * 108.84916 * 359.70700 * 19 18 16 25 25 H 1.09000 * 109.47603 * 298.43238 * 1 2 3 26 26 H 1.08998 * 109.47303 * 58.43208 * 1 2 3 27 27 H 1.09004 * 109.47127 * 178.43269 * 1 2 3 28 28 H 1.09007 * 109.47327 * 240.00068 * 2 1 3 29 29 H 1.09000 * 109.47385 * 120.00098 * 2 1 3 30 30 H 0.97003 * 119.99553 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00395 * 149.79697 * 13 3 2 32 32 H 1.09001 * 109.46668 * 294.29910 * 14 13 3 33 33 H 1.08996 * 109.46910 * 54.29449 * 14 13 3 34 34 H 1.08998 * 109.47440 * 90.00378 * 17 16 15 35 35 H 1.09007 * 109.46730 * 210.00044 * 17 16 15 36 36 H 1.09000 * 109.47641 * 329.99360 * 17 16 15 37 37 H 1.08997 * 109.47044 * 0.02562 * 22 21 20 38 38 H 1.08993 * 109.47156 * 120.03088 * 22 21 20 39 39 H 1.09001 * 109.46822 * 240.02790 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0149 5 6 1.5210 2.1587 1.2201 6 1 0.9014 3.0363 1.1084 7 6 1.8370 1.6937 2.4791 8 7 2.5909 0.6248 2.6151 9 14 1.1930 2.5812 3.9914 10 1 -0.1204 2.0075 4.3802 11 1 2.1560 2.4159 5.1098 12 1 1.0316 4.0255 3.6866 13 7 1.5666 2.1292 -1.2092 14 6 2.4817 1.9022 -2.3358 15 6 1.8952 2.5014 -3.5880 16 6 1.0917 1.8805 -4.4698 17 6 0.6178 0.4530 -4.3778 18 7 0.7824 2.7477 -5.4410 19 6 1.3816 3.9020 -5.1976 20 16 1.5852 5.5308 -5.8394 21 6 2.6264 5.9544 -4.4881 22 6 3.2718 7.3014 -4.2871 23 7 2.7582 4.9587 -3.7031 24 7 2.0875 3.7942 -4.0502 25 1 -0.3634 0.4893 0.9037 26 1 -0.3634 0.5380 -0.8756 27 1 -0.3633 -1.0273 -0.0281 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8129 0.2975 3.5008 31 1 1.4406 3.1157 -1.0390 32 1 3.4424 2.3716 -2.1238 33 1 2.6242 0.8310 -2.4779 34 1 -0.3194 0.4163 -3.8224 35 1 0.4612 0.0568 -5.3812 36 1 1.3686 -0.1468 -3.8635 37 1 2.9917 7.9643 -5.1057 38 1 2.9351 7.7282 -3.3424 39 1 4.3555 7.1857 -4.2677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273824782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:45 Heat of formation + Delta-G solvation = 95.827859 kcal Electronic energy + Delta-G solvation = -21446.646083 eV Core-core repulsion = 18324.120668 eV Total energy + Delta-G solvation = -3122.525415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.64669 -39.19461 -38.16891 -34.93087 -33.90096 -33.06548 -31.64807 -30.45516 -28.66592 -27.46630 -25.89448 -25.03113 -24.33966 -21.59740 -21.14747 -20.95696 -19.79954 -18.36484 -17.64583 -17.29463 -16.87555 -15.98914 -15.59430 -15.46757 -15.41875 -14.96586 -14.72731 -14.29114 -14.11201 -13.92392 -13.78373 -13.58115 -13.44038 -13.25170 -12.93136 -12.81069 -12.73105 -12.63652 -12.43095 -12.02621 -11.85155 -11.64958 -11.50256 -11.31570 -11.16917 -10.82419 -10.55988 -10.18776 -9.18818 -8.99037 -8.11837 -6.23958 -0.60773 -0.25488 0.06966 0.72060 0.79432 1.39489 1.41133 1.49780 1.58533 2.40505 2.84617 3.16788 3.60087 3.62644 3.74894 3.87964 4.16045 4.20899 4.48020 4.58509 4.64360 4.66695 4.81866 4.86312 4.89236 4.94824 4.98023 4.98584 5.06553 5.30224 5.38114 5.48605 5.55254 5.68577 5.80187 5.89539 6.19516 6.25627 6.37945 6.48711 6.66251 6.92721 7.44139 8.92973 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.004419 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.972032 B = 6334.850713 C = 7507.553800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C 0.224 3.776 4 H -0.033 1.033 5 C -0.526 4.526 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.667 5.667 14 C 0.146 3.854 15 C 0.020 3.980 16 C 0.047 3.953 17 C -0.058 4.058 18 N -0.463 5.463 19 C 0.071 3.929 20 S 0.215 5.785 21 C 0.107 3.893 22 C -0.074 4.074 23 N -0.288 5.288 24 N -0.318 5.318 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.262 0.738 31 H 0.323 0.677 32 H 0.017 0.983 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 11.123 -16.660 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C 0.116 3.884 4 H -0.016 1.016 5 C -0.564 4.564 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.297 5.297 14 C 0.016 3.984 15 C -0.095 4.095 16 C -0.086 4.086 17 C -0.116 4.116 18 N -0.189 5.189 19 C -0.296 4.296 20 S 0.450 5.550 21 C -0.190 4.190 22 C -0.134 4.134 23 N -0.101 5.101 24 N -0.094 5.094 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.035 0.965 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.149 0.851 38 H 0.131 0.869 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.120 10.665 -17.479 20.476 hybrid contribution 1.135 0.330 2.432 2.704 sum 1.015 10.994 -15.047 18.663 Atomic orbital electron populations 1.21296 0.96038 0.98529 1.00562 1.21299 0.96234 0.96956 0.98983 1.18963 0.91025 0.92595 0.85825 1.01552 1.21354 1.31652 1.11951 0.91452 0.93225 1.25551 0.95179 0.95666 1.01382 1.69999 1.37680 1.23863 1.23585 0.85642 0.78216 0.78962 0.79318 1.20120 1.20837 1.19760 1.60713 1.47737 1.15450 1.05757 1.20184 0.92213 1.00018 0.86030 1.21231 1.07084 0.80300 1.00892 1.21053 0.98221 0.98411 0.90925 1.20178 1.02045 0.85791 1.03616 1.70423 1.23481 0.97832 1.27137 1.27323 1.04197 1.04023 0.94044 1.84920 1.51741 0.94028 1.24283 1.29477 0.96990 0.99895 0.92657 1.20997 1.01998 0.83398 1.07012 1.73790 1.18230 0.92446 1.25682 1.47876 1.34182 1.09040 1.18281 0.95284 0.92938 0.94358 0.95204 0.92206 0.92883 0.86096 0.96511 0.88002 0.90237 0.89468 0.89801 0.85083 0.86906 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.50 71.98 0.68 -4.01 16 2 C -0.10 -4.59 5.58 30.59 0.17 -4.42 16 3 C 0.22 11.32 2.30 44.17 0.10 11.42 16 4 H -0.03 -1.87 7.84 -2.39 -0.02 -1.89 16 5 C -0.53 -28.73 7.31 25.60 0.19 -28.54 16 6 H 0.05 2.73 7.60 -2.91 -0.02 2.71 16 7 C 0.02 1.20 5.30 84.66 0.45 1.65 16 8 N -0.91 -51.87 11.33 21.45 0.24 -51.63 16 9 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.67 -29.39 5.51 -499.46 -2.75 -32.14 16 14 C 0.15 5.71 5.78 85.55 0.49 6.21 16 15 C 0.02 0.76 6.82 40.62 0.28 1.03 16 16 C 0.05 1.63 7.06 41.39 0.29 1.93 16 17 C -0.06 -1.63 10.21 71.23 0.73 -0.91 16 18 N -0.46 -16.63 11.32 -184.79 -2.09 -18.72 16 19 C 0.07 2.35 9.00 179.69 1.62 3.97 16 20 S 0.22 4.42 23.35 -56.49 -1.32 3.10 16 21 C 0.11 2.14 7.58 88.74 0.67 2.82 16 22 C -0.07 -0.57 10.49 71.24 0.75 0.18 16 23 N -0.29 -8.79 11.97 -49.04 -0.59 -9.38 16 24 N -0.32 -11.30 4.42 -181.54 -0.80 -12.10 16 25 H 0.03 1.38 7.25 -2.39 -0.02 1.36 16 26 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.03 1.28 7.45 -2.38 -0.02 1.26 16 29 H 0.06 3.21 6.09 -2.39 -0.01 3.19 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.32 14.99 8.25 -89.70 -0.74 14.25 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 3.74 6.38 -2.39 -0.02 3.73 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.08 2.19 7.12 -2.39 -0.02 2.17 16 37 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -70.24 336.56 1.47 -68.76 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.33 Total: 15.13 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 6.42 Total: -8.67 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -5.99 Total: -123.97 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.32 Total: 3.10 kcal Total: -70.24 1.47 -68.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273824782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.593 kcal (2) G-P(sol) polarization free energy of solvation -70.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds