Wall clock time and date at job start Tue Mar 31 2020 07:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 110.99597 * 2 1 4 4 C 1.50700 * 109.47213 * 66.04578 * 3 2 1 5 5 C 1.38413 * 120.02650 * 269.72072 * 4 3 2 6 6 F 1.35102 * 120.01269 * 359.97438 * 5 4 3 7 7 C 1.38478 * 119.97634 * 179.70114 * 5 4 3 8 8 C 1.38203 * 120.01965 * 0.59697 * 7 5 4 9 9 C 1.38210 * 120.05577 * 359.68005 * 8 7 5 10 10 C 1.38423 * 120.02402 * 90.00212 * 4 3 2 11 11 F 1.35095 * 120.01238 * 359.97438 * 10 4 3 12 12 C 1.46894 * 111.00111 * 236.04610 * 2 1 3 13 13 C 1.52998 * 109.47360 * 199.61916 * 12 2 1 14 14 H 1.08997 * 109.47150 * 305.66611 * 13 12 2 15 15 C 1.47207 * 109.46778 * 65.66421 * 13 12 2 16 16 N 3.67466 * 123.99525 * 157.75268 * 2 1 3 17 17 C 1.52999 * 109.47266 * 185.65868 * 13 12 2 18 18 C 1.50703 * 109.46951 * 174.99856 * 17 13 12 19 19 H 1.08003 * 120.00322 * 0.02562 * 18 17 13 20 20 C 1.37878 * 120.00226 * 179.72552 * 18 17 13 21 21 N 1.31513 * 119.99632 * 0.28155 * 20 18 17 22 22 Si 1.86800 * 120.00257 * 180.27671 * 20 18 17 23 23 H 1.48504 * 109.46935 * 90.00407 * 22 20 18 24 24 H 1.48502 * 109.46917 * 210.00232 * 22 20 18 25 25 H 1.48498 * 109.47036 * 330.00330 * 22 20 18 26 26 H 1.09004 * 109.46877 * 186.56425 * 1 2 3 27 27 H 1.08997 * 109.47622 * 306.56296 * 1 2 3 28 28 H 1.09000 * 109.47270 * 66.57234 * 1 2 3 29 29 H 1.09007 * 109.47039 * 186.04711 * 3 2 1 30 30 H 1.09001 * 109.47592 * 306.04060 * 3 2 1 31 31 H 1.08002 * 119.98732 * 180.32465 * 7 5 4 32 32 H 1.08009 * 119.97106 * 179.70401 * 8 7 5 33 33 H 1.08002 * 119.98742 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47309 * 79.61602 * 12 2 1 35 35 H 1.09001 * 109.47421 * 319.62316 * 12 2 1 36 36 H 1.09001 * 109.46954 * 55.00522 * 17 13 12 37 37 H 1.08988 * 109.47883 * 295.00130 * 17 13 12 38 38 H 0.97000 * 119.99846 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6368 2.0471 1.2984 5 6 0.4523 2.7549 1.4069 6 9 -0.3830 2.8408 0.3484 7 6 0.1209 3.3702 2.6024 8 6 0.9782 3.2881 3.6832 9 6 2.1640 2.5864 3.5744 10 6 2.4945 1.9652 2.3818 11 9 3.6534 1.2791 2.2758 12 6 1.9955 -0.7659 -1.1375 13 6 3.4467 -1.1617 -0.8581 14 1 4.0263 -0.2706 -0.6168 15 6 3.4901 -2.0976 0.2773 16 7 3.5236 -2.8198 1.1535 17 6 4.0393 -1.8355 -2.0973 18 6 5.5022 -2.1144 -1.8663 19 1 5.9630 -1.8390 -0.9292 20 6 6.2508 -2.7268 -2.8489 21 7 5.6896 -3.0625 -3.9899 22 14 8.0623 -3.0794 -2.5596 23 1 8.2135 -4.4262 -1.9525 24 1 8.7880 -3.0359 -3.8545 25 1 8.6253 -2.0567 -1.6419 26 1 -0.3633 -1.0210 0.1175 27 1 -0.3634 0.6122 0.8254 28 1 -0.3634 0.4086 -0.9429 29 1 3.0797 1.3444 -0.1083 30 1 1.5611 1.9273 -0.8310 31 1 -0.8058 3.9181 2.6888 32 1 0.7212 3.7723 4.6138 33 1 2.8334 2.5233 4.4196 34 1 1.9528 -0.1540 -2.0386 35 1 1.3948 -1.6643 -1.2798 36 1 3.9266 -1.1764 -2.9581 37 1 3.5162 -2.7728 -2.2865 38 1 6.2163 -3.4929 -4.6814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293362308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:24 Heat of formation + Delta-G solvation = -41.387379 kcal Electronic energy + Delta-G solvation = -23290.582143 eV Core-core repulsion = 19575.973492 eV Total energy + Delta-G solvation = -3714.608652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.25100 -48.97363 -39.28557 -37.85497 -35.67048 -33.61768 -32.26563 -31.23888 -30.50011 -27.47779 -26.99764 -24.53832 -23.02248 -22.56630 -21.69966 -20.95534 -18.30002 -17.48515 -16.94555 -16.63545 -16.22727 -16.03203 -15.71916 -15.37140 -15.09770 -14.77676 -14.55990 -14.50407 -14.29444 -13.36373 -13.02235 -12.92746 -12.85499 -12.38785 -12.32688 -12.21408 -11.92611 -11.80482 -11.61772 -11.44173 -11.32625 -11.13332 -11.00619 -10.67537 -10.49967 -10.16131 -9.51850 -9.21061 -9.14301 -8.94847 -8.43410 -8.24646 -6.07378 -4.10142 0.72610 0.77443 3.10037 3.31906 3.38281 3.42060 3.71009 3.79267 3.89936 4.06319 4.21518 4.33496 4.43550 4.46977 4.59242 4.90162 4.94224 5.22622 5.26269 5.30964 5.39306 5.48102 5.61660 5.66242 5.71377 5.75821 5.80177 5.89703 5.91819 5.94678 6.01264 6.37518 6.51421 6.54829 7.06358 7.10117 7.44578 7.55342 7.88329 8.26024 8.65289 8.94733 9.55252 11.03608 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.003919 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.787152 B = 7142.128750 C = 7688.991183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.088 3.912 4 C -0.145 4.145 5 C 0.132 3.868 6 F -0.130 7.130 7 C -0.170 4.170 8 C -0.065 4.065 9 C -0.168 4.168 10 C 0.153 3.847 11 F -0.119 7.119 12 C 0.062 3.938 13 C 0.012 3.988 14 H 0.099 0.901 15 C 0.258 3.742 16 N -0.481 5.481 17 C 0.031 3.969 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.272 1.272 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.699 15.984 10.657 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.263 5.263 3 C -0.039 4.039 4 C -0.148 4.148 5 C 0.112 3.888 6 F -0.108 7.108 7 C -0.189 4.189 8 C -0.083 4.083 9 C -0.187 4.187 10 C 0.132 3.868 11 F -0.097 7.097 12 C -0.066 4.066 13 C -0.010 4.010 14 H 0.117 0.883 15 C -0.059 4.059 16 N -0.157 5.157 17 C -0.007 4.007 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.441 14.547 12.170 22.683 hybrid contribution 0.799 0.281 -1.163 1.439 sum -11.642 14.828 11.007 21.830 Atomic orbital electron populations 1.22447 0.87355 1.02295 1.00331 1.62052 1.07820 1.11841 1.44538 1.20980 1.02287 0.88764 0.91869 1.19848 0.94838 1.02261 0.97816 1.17215 0.88274 0.98741 0.84589 1.91521 1.69840 1.94460 1.55015 1.21146 1.02242 1.03383 0.92086 1.20811 0.92385 0.96695 0.98400 1.21251 0.99387 1.00817 0.97231 1.17229 0.82995 0.93021 0.93510 1.91595 1.45057 1.76666 1.96394 1.22280 0.95460 0.97963 0.90920 1.19222 0.95331 0.95178 0.91316 0.88348 1.28806 0.91219 0.92948 0.92920 1.80962 1.10392 1.11656 1.12733 1.19177 0.95804 0.96206 0.89558 1.21148 0.94230 1.39716 1.01188 0.92472 1.24944 0.98557 0.95355 0.95069 1.69939 1.36356 1.41266 1.05557 0.86600 0.85077 0.78910 0.77558 1.20640 1.21121 1.19711 0.91261 0.91999 0.95142 0.88292 0.92674 0.84219 0.84107 0.84045 0.92321 0.89969 0.94464 0.95559 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.61 60.07 0.52 0.81 16 2 N -0.54 -7.74 4.40 -244.38 -1.08 -8.81 16 3 C 0.09 1.15 4.62 -4.98 -0.02 1.13 16 4 C -0.15 -1.76 4.90 -104.49 -0.51 -2.28 16 5 C 0.13 1.39 5.89 -39.43 -0.23 1.16 16 6 F -0.13 -1.43 15.05 2.25 0.03 -1.39 16 7 C -0.17 -1.39 10.03 -39.51 -0.40 -1.78 16 8 C -0.06 -0.48 10.04 -39.60 -0.40 -0.87 16 9 C -0.17 -1.57 10.03 -39.51 -0.40 -1.97 16 10 C 0.15 1.88 7.24 -39.43 -0.29 1.60 16 11 F -0.12 -1.77 16.48 2.25 0.04 -1.73 16 12 C 0.06 0.96 4.36 -3.83 -0.02 0.94 16 13 C 0.01 0.22 2.27 -93.41 -0.21 0.01 16 14 H 0.10 1.81 6.64 -51.93 -0.34 1.46 16 15 C 0.26 5.61 13.68 -20.76 -0.28 5.33 16 16 N -0.48 -11.30 18.54 42.15 0.78 -10.52 16 17 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 18 C -0.52 -14.17 8.60 -34.44 -0.30 -14.47 16 19 H 0.06 1.55 7.59 -52.48 -0.40 1.15 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 22 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.07 0.85 8.12 -51.93 -0.42 0.42 16 27 H 0.06 0.74 5.37 -51.93 -0.28 0.46 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 1.35 6.05 -51.92 -0.31 1.04 16 30 H 0.06 0.66 7.61 -51.93 -0.40 0.27 16 31 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.06 0.82 8.00 -51.93 -0.42 0.41 16 35 H 0.08 1.26 7.92 -51.93 -0.41 0.85 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.66 8.14 -51.94 -0.42 0.24 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -31.28 332.96 -6.90 -38.18 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.65 Total: -4.14 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -2.75 Total: -8.14 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.44 Total: -44.32 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.07 Total: -3.12 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.28 -6.90 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293362308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.211 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds