Wall clock time and date at job start Tue Mar 31 2020 07:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 110.99597 * 2 1 4 4 C 1.50700 * 109.47213 * 66.04578 * 3 2 1 5 5 C 1.38413 * 120.02650 * 269.72072 * 4 3 2 6 6 F 1.35102 * 120.01269 * 359.97438 * 5 4 3 7 7 C 1.38478 * 119.97634 * 179.70114 * 5 4 3 8 8 C 1.38203 * 120.01965 * 0.59697 * 7 5 4 9 9 C 1.38210 * 120.05577 * 359.68005 * 8 7 5 10 10 C 1.38423 * 120.02402 * 90.00212 * 4 3 2 11 11 F 1.35095 * 120.01238 * 359.97438 * 10 4 3 12 12 C 1.46894 * 111.00111 * 236.04610 * 2 1 3 13 13 C 1.52998 * 109.47360 * 199.61916 * 12 2 1 14 14 H 1.08997 * 109.47150 * 305.66611 * 13 12 2 15 15 C 1.47207 * 109.46778 * 65.66421 * 13 12 2 16 16 N 3.67466 * 123.99525 * 157.75268 * 2 1 3 17 17 C 1.52999 * 109.47266 * 185.65868 * 13 12 2 18 18 C 1.50703 * 109.46951 * 174.99856 * 17 13 12 19 19 H 1.08003 * 120.00322 * 0.02562 * 18 17 13 20 20 C 1.37878 * 120.00226 * 179.72552 * 18 17 13 21 21 N 1.31513 * 119.99632 * 0.28155 * 20 18 17 22 22 Si 1.86800 * 120.00257 * 180.27671 * 20 18 17 23 23 H 1.48504 * 109.46935 * 90.00407 * 22 20 18 24 24 H 1.48502 * 109.46917 * 210.00232 * 22 20 18 25 25 H 1.48498 * 109.47036 * 330.00330 * 22 20 18 26 26 H 1.09004 * 109.46877 * 186.56425 * 1 2 3 27 27 H 1.08997 * 109.47622 * 306.56296 * 1 2 3 28 28 H 1.09000 * 109.47270 * 66.57234 * 1 2 3 29 29 H 1.09007 * 109.47039 * 186.04711 * 3 2 1 30 30 H 1.09001 * 109.47592 * 306.04060 * 3 2 1 31 31 H 1.08002 * 119.98732 * 180.32465 * 7 5 4 32 32 H 1.08009 * 119.97106 * 179.70401 * 8 7 5 33 33 H 1.08002 * 119.98742 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47309 * 79.61602 * 12 2 1 35 35 H 1.09001 * 109.47421 * 319.62316 * 12 2 1 36 36 H 1.09001 * 109.46954 * 55.00522 * 17 13 12 37 37 H 1.08988 * 109.47883 * 295.00130 * 17 13 12 38 38 H 0.97000 * 119.99846 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6368 2.0471 1.2984 5 6 0.4523 2.7549 1.4069 6 9 -0.3830 2.8408 0.3484 7 6 0.1209 3.3702 2.6024 8 6 0.9782 3.2881 3.6832 9 6 2.1640 2.5864 3.5744 10 6 2.4945 1.9652 2.3818 11 9 3.6534 1.2791 2.2758 12 6 1.9955 -0.7659 -1.1375 13 6 3.4467 -1.1617 -0.8581 14 1 4.0263 -0.2706 -0.6168 15 6 3.4901 -2.0976 0.2773 16 7 3.5236 -2.8198 1.1535 17 6 4.0393 -1.8355 -2.0973 18 6 5.5022 -2.1144 -1.8663 19 1 5.9630 -1.8390 -0.9292 20 6 6.2508 -2.7268 -2.8489 21 7 5.6896 -3.0625 -3.9899 22 14 8.0623 -3.0794 -2.5596 23 1 8.2135 -4.4262 -1.9525 24 1 8.7880 -3.0359 -3.8545 25 1 8.6253 -2.0567 -1.6419 26 1 -0.3633 -1.0210 0.1175 27 1 -0.3634 0.6122 0.8254 28 1 -0.3634 0.4086 -0.9429 29 1 3.0797 1.3444 -0.1083 30 1 1.5611 1.9273 -0.8310 31 1 -0.8058 3.9181 2.6888 32 1 0.7212 3.7723 4.6138 33 1 2.8334 2.5233 4.4196 34 1 1.9528 -0.1540 -2.0386 35 1 1.3948 -1.6643 -1.2798 36 1 3.9266 -1.1764 -2.9581 37 1 3.5162 -2.7728 -2.2865 38 1 6.2163 -3.4929 -4.6814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293362308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:23 Heat of formation + Delta-G solvation = -59.044777 kcal Electronic energy + Delta-G solvation = -23291.347826 eV Core-core repulsion = 19575.973492 eV Total energy + Delta-G solvation = -3715.374334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.03652 -49.94908 -40.14837 -39.05078 -37.22513 -35.51559 -33.77430 -32.46448 -31.22372 -29.03043 -28.04919 -26.02555 -23.81238 -23.73666 -23.41506 -21.97189 -19.11011 -18.57900 -18.40042 -18.23180 -17.29471 -17.02493 -16.65515 -16.53944 -16.30854 -16.01282 -15.85358 -15.57823 -15.31515 -14.79949 -14.44506 -14.29396 -13.96336 -13.74540 -13.69436 -13.30122 -13.17867 -13.03770 -12.97763 -12.78450 -12.69867 -12.55746 -12.46398 -12.35882 -12.11446 -11.83526 -11.40870 -11.14615 -10.56328 -9.93740 -9.70652 -9.32376 -8.20343 -6.28494 -0.00708 0.02559 1.39053 1.41121 1.50670 2.04736 2.12450 2.36515 2.41341 2.94236 2.98174 3.14994 3.32988 3.46238 3.51466 3.69396 3.92938 4.07086 4.25638 4.26377 4.30939 4.41933 4.60490 4.66004 4.73463 4.80211 4.85842 4.92199 4.94867 4.97206 5.07496 5.12181 5.23842 5.44689 5.59318 5.77406 5.81819 5.94227 6.01839 6.20557 6.81525 6.91554 7.39923 8.90640 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.003919 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.787152 B = 7142.128750 C = 7688.991183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.553 5.553 3 C 0.089 3.911 4 C -0.162 4.162 5 C 0.120 3.880 6 F -0.135 7.135 7 C -0.158 4.158 8 C -0.051 4.051 9 C -0.167 4.167 10 C 0.118 3.882 11 F -0.144 7.144 12 C 0.072 3.928 13 C 0.022 3.978 14 H 0.107 0.893 15 C 0.267 3.733 16 N -0.513 5.513 17 C 0.039 3.961 18 C -0.540 4.540 19 H 0.051 0.949 20 C 0.014 3.986 21 N -0.922 5.922 22 Si 0.947 3.053 23 H -0.283 1.283 24 H -0.276 1.276 25 H -0.266 1.266 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.169 0.831 32 H 0.182 0.818 33 H 0.157 0.843 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.004 0.996 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 17.763 11.924 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.277 5.277 3 C -0.038 4.038 4 C -0.164 4.164 5 C 0.100 3.900 6 F -0.113 7.113 7 C -0.177 4.177 8 C -0.069 4.069 9 C -0.185 4.185 10 C 0.098 3.902 11 F -0.123 7.123 12 C -0.057 4.057 13 C 0.000 4.000 14 H 0.125 0.875 15 C -0.049 4.049 16 N -0.191 5.191 17 C 0.000 4.000 18 C -0.578 4.578 19 H 0.069 0.931 20 C -0.185 4.185 21 N -0.562 5.562 22 Si 0.773 3.227 23 H -0.209 1.209 24 H -0.201 1.201 25 H -0.190 1.190 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.187 0.813 32 H 0.199 0.801 33 H 0.175 0.825 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.022 0.978 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.467 16.340 13.444 25.082 hybrid contribution 1.061 -0.211 -1.498 1.848 sum -12.407 16.129 11.946 23.596 Atomic orbital electron populations 1.22432 0.85947 1.02473 1.01113 1.61966 1.09120 1.12711 1.43902 1.20936 1.01437 0.88258 0.93161 1.19808 0.95897 1.03352 0.97330 1.17389 0.87872 0.99339 0.85417 1.91506 1.69818 1.94549 1.55451 1.21552 1.03154 1.02013 0.90983 1.21286 0.90831 0.95141 0.99602 1.21558 1.00405 1.00084 0.96486 1.17636 0.82818 0.94661 0.95057 1.91524 1.46521 1.77602 1.96635 1.22106 0.92806 0.98657 0.92117 1.19160 0.98006 0.94297 0.88490 0.87485 1.29298 0.90163 0.92564 0.92884 1.80947 1.11680 1.12604 1.13832 1.18991 0.94144 0.95456 0.91385 1.21524 0.96073 1.39381 1.00812 0.93113 1.25684 1.02462 0.95396 0.94987 1.70025 1.37806 1.42101 1.06273 0.85715 0.80686 0.78491 0.77841 1.20919 1.20114 1.19008 0.91321 0.91503 0.94040 0.89695 0.91857 0.81320 0.80081 0.82505 0.90623 0.89882 0.94544 0.97770 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.61 127.69 1.10 1.76 16 2 N -0.55 -15.61 4.40 -927.07 -4.08 -19.69 16 3 C 0.09 2.31 4.62 85.56 0.39 2.70 16 4 C -0.16 -3.82 4.90 -19.78 -0.10 -3.91 16 5 C 0.12 2.30 5.89 22.37 0.13 2.43 16 6 F -0.13 -2.71 15.05 44.97 0.68 -2.03 16 7 C -0.16 -2.04 10.03 22.32 0.22 -1.82 16 8 C -0.05 -0.56 10.04 22.25 0.22 -0.33 16 9 C -0.17 -2.78 10.03 22.32 0.22 -2.55 16 10 C 0.12 2.87 7.24 22.37 0.16 3.03 16 11 F -0.14 -4.43 16.48 44.97 0.74 -3.69 16 12 C 0.07 2.18 4.36 86.30 0.38 2.56 16 13 C 0.02 0.87 2.27 -12.60 -0.03 0.84 16 14 H 0.11 3.98 6.64 -2.39 -0.02 3.97 16 15 C 0.27 11.78 13.68 89.44 1.22 13.00 16 16 N -0.51 -24.46 18.54 20.01 0.37 -24.09 16 17 C 0.04 1.86 4.42 29.85 0.13 1.99 16 18 C -0.54 -29.47 8.60 25.60 0.22 -29.25 16 19 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 20 C 0.01 0.77 5.46 84.66 0.46 1.23 16 21 N -0.92 -53.57 13.29 21.45 0.28 -53.28 16 22 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H 0.07 1.61 8.12 -2.38 -0.02 1.59 16 27 H 0.07 1.51 5.37 -2.39 -0.01 1.50 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 2.38 6.05 -2.38 -0.01 2.36 16 30 H 0.06 1.49 7.61 -2.39 -0.02 1.47 16 31 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 32 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 33 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.08 2.05 8.00 -2.39 -0.02 2.03 16 35 H 0.08 2.51 7.92 -2.39 -0.02 2.49 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -67.83 332.96 5.85 -61.98 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.08 Total: 2.83 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 4.75 Total: -8.31 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -3.42 Total: -97.07 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 1.42 Total: -5.72 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -67.83 5.85 -61.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293362308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.938 kcal (2) G-P(sol) polarization free energy of solvation -67.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds