Wall clock time and date at job start Tue Mar 31 2020 07:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00635 * 2 1 4 4 C 1.50699 * 109.47112 * 269.72773 * 3 2 1 5 5 H 1.07999 * 120.00285 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99632 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00264 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99887 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47118 * 90.00261 * 8 6 4 10 10 H 1.48499 * 109.47146 * 210.00270 * 8 6 4 11 11 H 1.48501 * 109.47153 * 330.00084 * 8 6 4 12 12 C 1.38635 * 119.99730 * 179.72761 * 2 1 3 13 13 C 1.39170 * 120.48461 * 4.72040 * 12 2 1 14 14 C 1.39126 * 118.26572 * 179.78223 * 13 12 2 15 15 N 1.38635 * 120.48185 * 180.23631 * 14 13 12 16 16 C 1.46462 * 111.00339 * 306.23730 * 15 14 13 17 17 C 1.53249 * 109.85800 * 162.23256 * 16 15 14 18 18 S 1.81895 * 108.50510 * 62.00706 * 17 16 15 19 19 C 1.81898 * 101.91471 * 308.69409 * 18 17 16 20 20 C 1.46472 * 110.99660 * 180.25867 * 15 14 13 21 21 N 1.33199 * 119.03364 * 0.49603 * 14 13 12 22 22 C 1.31731 * 120.87626 * 359.74342 * 21 14 13 23 23 N 1.31756 * 121.91488 * 0.02562 * 22 21 14 24 24 H 1.08992 * 109.47265 * 270.27785 * 1 2 3 25 25 H 1.09003 * 109.47006 * 30.27413 * 1 2 3 26 26 H 1.08997 * 109.47318 * 150.26967 * 1 2 3 27 27 H 1.09003 * 109.46522 * 29.72473 * 3 2 1 28 28 H 1.08996 * 109.47508 * 149.72323 * 3 2 1 29 29 H 0.97002 * 119.99640 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.86429 * 0.02562 * 13 12 2 31 31 H 1.08993 * 109.40856 * 282.35611 * 16 15 14 32 32 H 1.09004 * 109.40329 * 42.12107 * 16 15 14 33 33 H 1.08999 * 109.63507 * 302.29723 * 17 16 15 34 34 H 1.08999 * 109.79190 * 181.80803 * 17 16 15 35 35 H 1.09004 * 109.63212 * 291.60071 * 19 18 17 36 36 H 1.09003 * 109.79789 * 171.10829 * 19 18 17 37 37 H 1.09008 * 109.40502 * 317.88515 * 20 15 14 38 38 H 1.09000 * 109.41005 * 77.72831 * 20 15 14 39 39 H 1.07999 * 119.04025 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4546 1.7003 -1.4208 5 1 2.1074 1.0904 -2.2417 6 6 3.1331 2.8738 -1.6726 7 7 3.5555 3.6168 -0.6730 8 14 3.4524 3.4086 -3.4338 9 1 2.3243 4.2499 -3.9079 10 1 4.7128 4.1917 -3.4926 11 1 3.5741 2.2092 -4.3010 12 6 2.1581 -1.2006 0.0057 13 6 1.4759 -2.4101 -0.0872 14 6 2.2178 -3.5871 -0.0819 15 7 1.5857 -4.8172 -0.1771 16 6 0.5505 -4.9564 0.8496 17 6 -0.4115 -6.0870 0.4690 18 16 0.5266 -7.6437 0.3973 19 6 1.9177 -7.1943 -0.6851 20 6 2.5590 -5.9113 -0.1456 21 7 3.5438 -3.5149 0.0214 22 6 4.1524 -2.3502 0.1125 23 7 3.4859 -1.2136 0.1063 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3634 -0.8924 -0.5096 27 1 1.6064 2.0296 0.5096 28 1 3.1478 1.1395 0.5181 29 1 4.0332 4.4422 -0.8503 30 1 0.3990 -2.4342 -0.1655 31 1 1.0183 -5.1858 1.8069 32 1 -0.0042 -4.0219 0.9336 33 1 -0.8525 -5.8800 -0.5061 34 1 -1.1997 -6.1686 1.2174 35 1 1.5533 -7.0236 -1.6981 36 1 2.6548 -7.9974 -0.6916 37 1 3.4187 -5.6491 -0.7624 38 1 2.8864 -6.0754 0.8811 39 1 5.2290 -2.3262 0.1946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302783439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:22 Heat of formation + Delta-G solvation = 77.238231 kcal Electronic energy + Delta-G solvation = -21387.273634 eV Core-core repulsion = 18263.942113 eV Total energy + Delta-G solvation = -3123.331521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73798 -38.32059 -36.29250 -32.85788 -32.51434 -32.04490 -30.80074 -29.15204 -27.76313 -25.89549 -24.17332 -23.54557 -22.54013 -21.91661 -20.31491 -17.89565 -17.09094 -16.71452 -16.44221 -15.56458 -15.34635 -15.04123 -14.68720 -14.55383 -14.29017 -13.98015 -13.92294 -13.62255 -13.26528 -13.10351 -12.86540 -12.60454 -12.19204 -11.93534 -11.71076 -11.29096 -11.10248 -11.00126 -10.73131 -10.66448 -10.27888 -10.05915 -9.98926 -9.86717 -9.43089 -8.59643 -8.46762 -8.39451 -7.94927 -7.15851 -6.07865 -4.14206 1.48675 1.58811 1.94615 2.24671 3.26357 3.29505 3.33357 3.37641 3.69567 4.37787 4.40457 4.43655 4.62996 4.70612 4.86418 4.94138 5.00850 5.11240 5.11511 5.24412 5.30224 5.44773 5.51381 5.61290 5.65329 5.72392 5.81913 5.84319 5.91129 6.14421 6.45943 6.54695 6.83823 7.18755 7.38454 7.55166 7.79946 8.04157 8.15397 8.18536 8.85941 8.96008 9.50520 10.98410 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.029146 B = 0.003465 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.454423 B = 8078.048177 C = 8359.440149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.577 5.577 3 C 0.249 3.751 4 C -0.526 4.526 5 H 0.055 0.945 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.463 3.537 13 C -0.329 4.329 14 C 0.375 3.625 15 N -0.487 5.487 16 C 0.060 3.940 17 C -0.075 4.075 18 S -0.277 6.277 19 C -0.076 4.076 20 C 0.065 3.935 21 N -0.615 5.615 22 C 0.356 3.644 23 N -0.568 5.568 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.053 0.947 29 H 0.264 0.736 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 -18.031 3.278 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.283 5.283 3 C 0.130 3.870 4 C -0.565 4.565 5 H 0.073 0.927 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.219 3.781 13 C -0.362 4.362 14 C 0.139 3.861 15 N -0.204 5.204 16 C -0.068 4.068 17 C -0.223 4.223 18 S -0.051 6.051 19 C -0.225 4.225 20 C -0.063 4.063 21 N -0.343 5.343 22 C 0.064 3.936 23 N -0.292 5.292 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.152 0.848 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.125 -18.641 3.452 19.923 hybrid contribution -0.112 1.553 -1.187 1.958 sum -6.238 -17.088 2.265 18.331 Atomic orbital electron populations 1.21652 0.79979 1.02803 1.00543 1.47112 1.04961 1.04651 1.71621 1.19411 0.92680 0.77308 0.97562 1.21411 1.36604 1.06296 0.92188 0.92655 1.24906 0.95340 0.96318 0.97345 1.69929 1.38391 1.14242 1.30672 0.86517 0.77732 0.78589 0.84700 1.20663 1.21023 1.19975 1.18353 0.88192 0.86098 0.85472 1.21364 1.01346 0.91449 1.22002 1.19307 0.88898 0.88835 0.89047 1.58076 1.14691 1.01108 1.46573 1.22400 0.92373 0.99846 0.92201 1.23525 0.99296 0.93208 1.06312 1.86910 1.30660 1.21118 1.66459 1.23622 0.97605 1.00393 1.00881 1.22143 0.94284 0.87623 1.02296 1.68218 1.09092 1.30743 1.26215 1.24389 1.00056 0.81472 0.87699 1.68132 1.07113 1.30946 1.23059 0.93600 0.90370 0.92187 0.95166 0.92877 0.92680 0.84834 0.92120 0.88452 0.88708 0.86943 0.89019 0.87076 0.87430 0.92147 0.79513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 10.30 59.84 0.62 2.12 16 2 N -0.58 -12.04 2.96 -183.00 -0.54 -12.58 16 3 C 0.25 6.29 5.23 -5.19 -0.03 6.26 16 4 C -0.53 -14.51 9.39 -34.44 -0.32 -14.84 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.46 9.37 7.38 -154.70 -1.14 8.22 16 13 C -0.33 -5.53 8.26 -38.91 -0.32 -5.85 16 14 C 0.37 5.94 6.43 -154.69 -0.99 4.95 16 15 N -0.49 -6.22 4.43 -173.48 -0.77 -6.98 16 16 C 0.06 0.62 5.28 -3.93 -0.02 0.60 16 17 C -0.07 -0.65 6.69 37.29 0.25 -0.41 16 18 S -0.28 -2.80 22.40 -107.50 -2.41 -5.21 16 19 C -0.08 -0.72 6.69 37.29 0.25 -0.47 16 20 C 0.06 0.74 4.85 -3.93 -0.02 0.72 16 21 N -0.62 -10.20 8.58 -13.88 -0.12 -10.32 16 22 C 0.36 6.27 12.28 -92.24 -1.13 5.14 16 23 N -0.57 -12.00 9.23 -13.88 -0.13 -12.13 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 26 H 0.06 0.82 6.05 -51.93 -0.31 0.51 16 27 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.05 1.47 7.33 -51.93 -0.38 1.09 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.13 1.93 5.24 -52.49 -0.27 1.66 16 31 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 32 H 0.10 0.97 6.29 -51.93 -0.33 0.65 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.11 1.34 7.16 -51.92 -0.37 0.97 16 38 H 0.06 0.72 7.91 -51.93 -0.41 0.31 16 39 H 0.19 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -31.10 328.89 -11.67 -42.77 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.41 Total: 0.03 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -2.96 Total: 8.10 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.82 Total: -67.15 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.41 Total: -5.21 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.10 -11.67 -42.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302783439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.007 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds