Wall clock time and date at job start Tue Mar 31 2020 07:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00635 * 2 1 4 4 C 1.50699 * 109.47112 * 269.72773 * 3 2 1 5 5 H 1.07999 * 120.00285 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99632 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00264 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99887 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47118 * 90.00261 * 8 6 4 10 10 H 1.48499 * 109.47146 * 210.00270 * 8 6 4 11 11 H 1.48501 * 109.47153 * 330.00084 * 8 6 4 12 12 C 1.38635 * 119.99730 * 179.72761 * 2 1 3 13 13 C 1.39170 * 120.48461 * 4.72040 * 12 2 1 14 14 C 1.39126 * 118.26572 * 179.78223 * 13 12 2 15 15 N 1.38635 * 120.48185 * 180.23631 * 14 13 12 16 16 C 1.46462 * 111.00339 * 306.23730 * 15 14 13 17 17 C 1.53249 * 109.85800 * 162.23256 * 16 15 14 18 18 S 1.81895 * 108.50510 * 62.00706 * 17 16 15 19 19 C 1.81898 * 101.91471 * 308.69409 * 18 17 16 20 20 C 1.46472 * 110.99660 * 180.25867 * 15 14 13 21 21 N 1.33199 * 119.03364 * 0.49603 * 14 13 12 22 22 C 1.31731 * 120.87626 * 359.74342 * 21 14 13 23 23 N 1.31756 * 121.91488 * 0.02562 * 22 21 14 24 24 H 1.08992 * 109.47265 * 270.27785 * 1 2 3 25 25 H 1.09003 * 109.47006 * 30.27413 * 1 2 3 26 26 H 1.08997 * 109.47318 * 150.26967 * 1 2 3 27 27 H 1.09003 * 109.46522 * 29.72473 * 3 2 1 28 28 H 1.08996 * 109.47508 * 149.72323 * 3 2 1 29 29 H 0.97002 * 119.99640 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.86429 * 0.02562 * 13 12 2 31 31 H 1.08993 * 109.40856 * 282.35611 * 16 15 14 32 32 H 1.09004 * 109.40329 * 42.12107 * 16 15 14 33 33 H 1.08999 * 109.63507 * 302.29723 * 17 16 15 34 34 H 1.08999 * 109.79190 * 181.80803 * 17 16 15 35 35 H 1.09004 * 109.63212 * 291.60071 * 19 18 17 36 36 H 1.09003 * 109.79789 * 171.10829 * 19 18 17 37 37 H 1.09008 * 109.40502 * 317.88515 * 20 15 14 38 38 H 1.09000 * 109.41005 * 77.72831 * 20 15 14 39 39 H 1.07999 * 119.04025 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4546 1.7003 -1.4208 5 1 2.1074 1.0904 -2.2417 6 6 3.1331 2.8738 -1.6726 7 7 3.5555 3.6168 -0.6730 8 14 3.4524 3.4086 -3.4338 9 1 2.3243 4.2499 -3.9079 10 1 4.7128 4.1917 -3.4926 11 1 3.5741 2.2092 -4.3010 12 6 2.1581 -1.2006 0.0057 13 6 1.4759 -2.4101 -0.0872 14 6 2.2178 -3.5871 -0.0819 15 7 1.5857 -4.8172 -0.1771 16 6 0.5505 -4.9564 0.8496 17 6 -0.4115 -6.0870 0.4690 18 16 0.5266 -7.6437 0.3973 19 6 1.9177 -7.1943 -0.6851 20 6 2.5590 -5.9113 -0.1456 21 7 3.5438 -3.5149 0.0214 22 6 4.1524 -2.3502 0.1125 23 7 3.4859 -1.2136 0.1063 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3634 -0.8924 -0.5096 27 1 1.6064 2.0296 0.5096 28 1 3.1478 1.1395 0.5181 29 1 4.0332 4.4422 -0.8503 30 1 0.3990 -2.4342 -0.1655 31 1 1.0183 -5.1858 1.8069 32 1 -0.0042 -4.0219 0.9336 33 1 -0.8525 -5.8800 -0.5061 34 1 -1.1997 -6.1686 1.2174 35 1 1.5533 -7.0236 -1.6981 36 1 2.6548 -7.9974 -0.6916 37 1 3.4187 -5.6491 -0.7624 38 1 2.8864 -6.0754 0.8811 39 1 5.2290 -2.3262 0.1946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302783439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:21 Heat of formation + Delta-G solvation = 60.394938 kcal Electronic energy + Delta-G solvation = -21388.004014 eV Core-core repulsion = 18263.942113 eV Total energy + Delta-G solvation = -3124.061901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.04075 -39.47834 -37.77579 -34.87018 -33.77229 -33.00396 -32.07459 -30.44866 -29.31938 -27.42811 -25.31872 -25.09338 -23.76732 -23.11891 -21.60967 -19.05543 -18.73746 -18.32832 -17.65271 -16.75427 -16.66020 -16.36478 -16.28362 -15.83278 -15.35691 -15.31768 -14.89885 -14.81400 -14.62211 -14.25092 -13.98826 -13.70207 -13.56942 -13.29158 -13.12161 -12.77957 -12.69535 -12.56271 -12.20673 -12.13945 -11.95235 -11.64646 -11.34013 -11.07036 -10.74560 -10.61769 -10.00603 -9.57984 -8.74959 -8.73335 -8.14726 -6.33948 0.24227 0.54299 0.77402 1.36596 1.38544 1.48689 1.50316 2.09791 2.33078 2.43154 3.06481 3.09470 3.36464 3.62169 3.77626 3.79405 4.02092 4.08535 4.20731 4.21476 4.33585 4.38108 4.44647 4.59786 4.62830 4.65651 4.77176 4.82150 4.89586 4.90788 5.02538 5.16771 5.33869 5.51106 5.67154 5.93754 6.00988 6.10622 6.40718 6.68863 6.78336 7.34645 7.53949 8.86096 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.029146 B = 0.003465 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.454423 B = 8078.048177 C = 8359.440149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.593 5.593 3 C 0.269 3.731 4 C -0.536 4.536 5 H 0.045 0.955 6 C 0.013 3.987 7 N -0.925 5.925 8 Si 0.962 3.038 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.440 3.560 13 C -0.322 4.322 14 C 0.376 3.624 15 N -0.485 5.485 16 C 0.058 3.942 17 C -0.064 4.064 18 S -0.298 6.298 19 C -0.067 4.067 20 C 0.068 3.932 21 N -0.611 5.611 22 C 0.350 3.650 23 N -0.614 5.614 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.016 0.984 28 H 0.019 0.981 29 H 0.267 0.733 30 H 0.159 0.841 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 -19.735 2.542 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.302 5.302 3 C 0.148 3.852 4 C -0.575 4.575 5 H 0.063 0.937 6 C -0.186 4.186 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.202 1.202 12 C 0.197 3.803 13 C -0.354 4.354 14 C 0.139 3.861 15 N -0.202 5.202 16 C -0.069 4.069 17 C -0.213 4.213 18 S -0.072 6.072 19 C -0.215 4.215 20 C -0.060 4.060 21 N -0.338 5.338 22 C 0.059 3.941 23 N -0.340 5.340 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.176 0.824 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.375 -20.404 2.723 21.867 hybrid contribution 0.267 1.932 -0.916 2.155 sum -7.109 -18.472 1.807 19.875 Atomic orbital electron populations 1.21845 0.77269 1.03644 1.02219 1.46992 1.06524 1.03460 1.73176 1.18801 0.91467 0.79155 0.95768 1.21631 1.36559 1.06322 0.92986 0.93669 1.25726 0.95081 0.96405 1.01368 1.70037 1.39058 1.14689 1.32697 0.85508 0.78022 0.78078 0.79713 1.19293 1.20489 1.20155 1.18672 0.88368 0.86818 0.86404 1.21471 1.02460 0.90266 1.21206 1.19636 0.88693 0.89991 0.87768 1.58146 1.14949 1.00116 1.47004 1.22508 0.91966 1.01035 0.91350 1.23554 0.98990 0.91400 1.07332 1.87043 1.31166 1.22348 1.66664 1.23575 0.97703 0.99733 1.00485 1.22139 0.93931 0.88001 1.01970 1.68326 1.09690 1.30018 1.25766 1.24865 1.01087 0.81035 0.87077 1.68095 1.08317 1.32858 1.24765 0.91419 0.91212 0.89617 0.96648 0.96313 0.92445 0.82360 0.92346 0.87618 0.88252 0.84669 0.88905 0.85346 0.88537 0.92534 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.85 10.30 127.77 1.32 4.16 16 2 N -0.59 -25.00 2.96 -732.89 -2.17 -27.17 16 3 C 0.27 14.08 5.23 85.63 0.45 14.53 16 4 C -0.54 -30.22 9.39 25.60 0.24 -29.98 16 5 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 6 C 0.01 0.76 5.46 84.65 0.46 1.22 16 7 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 8 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 C 0.44 17.80 7.38 132.97 0.98 18.79 16 13 C -0.32 -10.34 8.26 22.71 0.19 -10.15 16 14 C 0.38 11.32 6.43 132.95 0.85 12.17 16 15 N -0.48 -11.29 4.43 -702.76 -3.11 -14.40 16 16 C 0.06 1.06 5.28 86.47 0.46 1.51 16 17 C -0.06 -0.92 6.69 72.07 0.48 -0.44 16 18 S -0.30 -5.29 22.40 -56.49 -1.27 -6.55 16 19 C -0.07 -1.10 6.69 72.07 0.48 -0.62 16 20 C 0.07 1.42 4.85 86.47 0.42 1.84 16 21 N -0.61 -19.70 8.58 -197.84 -1.70 -21.40 16 22 C 0.35 12.34 12.28 180.91 2.22 14.57 16 23 N -0.61 -26.47 9.23 -197.82 -1.83 -28.30 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 26 H 0.09 2.15 6.05 -2.39 -0.01 2.13 16 27 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 28 H 0.02 1.10 7.33 -2.39 -0.02 1.08 16 29 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.16 4.13 5.24 -2.91 -0.02 4.11 16 31 H 0.06 1.12 7.91 -2.39 -0.02 1.10 16 32 H 0.11 1.77 6.29 -2.39 -0.02 1.75 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 2.26 7.16 -2.38 -0.02 2.25 16 38 H 0.06 1.24 7.91 -2.39 -0.02 1.23 16 39 H 0.21 5.99 8.06 -2.91 -0.02 5.97 16 Total: -1.00 -68.03 328.89 1.85 -66.18 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.05 Total: 11.95 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 8.55 Total: 27.59 kcal Atomic # 7 Polarization: -137.09 SS G_CDS: -8.52 Total: -145.61 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.27 Total: -6.55 kcal Total: -68.03 1.85 -66.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302783439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.578 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds