Wall clock time and date at job start Tue Mar 31 2020 07:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 120.00003 * 2 1 4 4 C 1.52998 * 109.47377 * 270.00201 * 3 2 1 5 5 F 1.39901 * 109.46996 * 59.99535 * 4 3 2 6 6 F 1.39898 * 109.47132 * 180.02562 * 4 3 2 7 7 F 1.39900 * 109.47009 * 299.99985 * 4 3 2 8 8 C 1.34778 * 120.00197 * 180.02562 * 2 1 3 9 9 O 1.21580 * 119.99853 * 172.58201 * 8 2 1 10 10 N 1.34783 * 119.99567 * 352.58084 * 8 2 1 11 11 C 1.46919 * 120.62698 * 155.54977 * 10 8 2 12 12 C 1.53196 * 108.89375 * 233.55994 * 11 10 8 13 13 C 1.53070 * 109.29076 * 305.57892 * 12 11 10 14 14 C 1.50706 * 109.44195 * 181.23595 * 13 12 11 15 15 H 1.07997 * 119.99979 * 239.79629 * 14 13 12 16 16 C 1.37869 * 119.99728 * 59.79189 * 14 13 12 17 17 N 1.31520 * 120.00559 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47000 * 60.00235 * 18 16 14 20 20 H 1.48493 * 109.47366 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47112 * 300.00458 * 18 16 14 22 22 C 1.53046 * 109.65916 * 61.15344 * 13 12 11 23 23 C 1.46922 * 120.63073 * 335.57437 * 10 8 2 24 24 H 1.08996 * 109.46969 * 272.92375 * 1 2 3 25 25 H 1.09005 * 109.46901 * 32.92256 * 1 2 3 26 26 H 1.08993 * 109.47200 * 152.91759 * 1 2 3 27 27 H 1.09000 * 109.47024 * 30.00270 * 3 2 1 28 28 H 1.08997 * 109.46878 * 150.00214 * 3 2 1 29 29 H 1.09007 * 109.58667 * 353.41651 * 11 10 8 30 30 H 1.09000 * 109.58724 * 113.70221 * 11 10 8 31 31 H 1.09001 * 109.49537 * 65.38911 * 12 11 10 32 32 H 1.08997 * 109.49816 * 185.48813 * 12 11 10 33 33 H 1.09002 * 109.35372 * 301.13008 * 13 12 11 34 34 H 0.96992 * 120.00227 * 179.97438 * 17 16 14 35 35 H 1.09004 * 109.49575 * 178.74590 * 22 13 12 36 36 H 1.09001 * 109.52110 * 58.67019 * 22 13 12 37 37 H 1.08999 * 109.58336 * 246.15787 * 23 10 8 38 38 H 1.09004 * 109.58841 * 6.43692 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 9 1.2301 1.8777 -2.1019 6 9 3.1525 2.9218 -1.4424 7 9 3.2086 0.7356 -2.1020 8 6 2.1389 -1.1672 -0.0005 9 8 3.3471 -1.1715 -0.1365 10 7 1.4734 -2.3296 0.1497 11 6 2.0378 -3.5865 -0.3604 12 6 1.0037 -4.2634 -1.2655 13 6 -0.3104 -4.4269 -0.4977 14 6 -1.3210 -5.1200 -1.3749 15 1 -2.2511 -4.6285 -1.6193 16 6 -1.0581 -6.3813 -1.8654 17 7 0.0744 -6.9800 -1.5674 18 14 -2.3104 -7.2403 -2.9533 19 1 -2.5503 -6.4247 -4.1709 20 1 -1.7924 -8.5755 -3.3455 21 1 -3.5844 -7.4035 -2.2079 22 6 -0.8449 -3.0510 -0.0931 23 6 0.1696 -2.3637 0.8261 24 1 -0.3633 0.0524 1.0263 25 1 -0.3633 0.8627 -0.5586 26 1 -0.3633 -0.9149 -0.4678 27 1 1.6085 2.0284 0.5139 28 1 3.1499 1.1384 0.5138 29 1 2.9417 -3.3758 -0.9322 30 1 2.2788 -4.2443 0.4747 31 1 0.8331 -3.6465 -2.1477 32 1 1.3731 -5.2422 -1.5713 33 1 -0.1345 -5.0253 0.3962 34 1 0.2592 -7.8676 -1.9122 35 1 -1.7917 -3.1691 0.4339 36 1 -0.9982 -2.4432 -0.9848 37 1 0.2559 -2.9227 1.7578 38 1 -0.1581 -1.3462 1.0395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334265347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:48 Heat of formation + Delta-G solvation = -145.338536 kcal Electronic energy + Delta-G solvation = -25393.574454 eV Core-core repulsion = 21243.688917 eV Total energy + Delta-G solvation = -4149.885537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.03989 -47.62560 -47.44218 -40.51552 -37.17741 -35.87878 -33.62501 -31.21705 -31.00797 -29.15482 -27.28262 -25.57579 -23.76546 -22.61882 -22.15767 -20.43611 -18.78622 -18.48440 -18.31879 -17.77548 -16.98425 -16.54835 -16.07245 -15.13204 -14.73694 -14.55971 -14.49448 -14.23119 -14.11158 -13.95590 -13.86466 -13.65699 -13.61830 -13.20749 -12.87787 -12.80283 -12.42032 -12.37374 -12.16733 -11.86047 -11.19211 -10.99073 -10.93645 -10.70303 -10.42741 -10.11408 -9.88902 -9.57836 -9.19952 -9.02862 -8.87421 -8.39255 -7.93827 -6.03854 -4.11186 2.39929 2.75301 3.27778 3.28875 3.34188 3.36047 3.80649 3.85927 4.01438 4.27124 4.39276 4.81419 4.91054 5.07013 5.23213 5.25869 5.44718 5.64798 5.73821 5.79322 5.98267 6.15769 6.24174 6.37708 6.43355 6.54120 6.74700 6.93157 6.95505 7.18641 7.36968 7.67369 7.89060 8.01221 8.10413 8.36959 8.68074 8.91975 9.54251 11.01368 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.004122 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.872505 B = 6791.005627 C = 6913.705645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.632 5.632 3 C 0.098 3.902 4 C 0.430 3.570 5 F -0.186 7.186 6 F -0.188 7.188 7 F -0.169 7.169 8 C 0.710 3.290 9 O -0.579 6.579 10 N -0.618 5.618 11 C 0.131 3.869 12 C -0.125 4.125 13 C 0.051 3.949 14 C -0.516 4.516 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.127 4.127 23 C 0.069 3.931 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.105 0.895 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 16.470 4.992 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.371 5.371 3 C -0.030 4.030 4 C 0.374 3.626 5 F -0.168 7.168 6 F -0.169 7.169 7 F -0.150 7.150 8 C 0.413 3.587 9 O -0.456 6.456 10 N -0.354 5.354 11 C 0.010 3.990 12 C -0.163 4.163 13 C 0.032 3.968 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.165 4.165 23 C -0.053 4.053 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.123 0.877 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.965 16.224 4.863 17.050 hybrid contribution -0.777 -0.438 -0.926 1.286 sum 1.188 15.786 3.937 16.313 Atomic orbital electron populations 1.22659 0.78835 1.05430 1.01486 1.46937 1.06969 1.03823 1.79326 1.22337 1.02346 0.87916 0.90359 1.21451 0.74204 0.74954 0.92001 1.93163 1.44420 1.95381 1.83793 1.93165 1.79796 1.46901 1.97069 1.93272 1.76254 1.62268 1.83192 1.15945 0.84959 0.80200 0.77605 1.90897 1.12044 1.85747 1.56935 1.47292 1.21651 1.05866 1.60632 1.21786 0.97280 0.82207 0.97758 1.22071 0.96297 1.01245 0.96707 1.18606 0.92624 0.89750 0.95794 1.21142 1.02896 1.00690 1.30646 0.92781 1.24957 0.95353 0.97298 0.96271 1.69827 1.23131 1.14625 1.45257 0.86683 0.81663 0.78767 0.81019 1.20348 1.21303 1.20328 1.22089 0.96988 0.99610 0.97788 1.22848 0.83488 1.03078 0.95875 0.91503 0.91206 0.87755 0.86336 0.85668 0.91143 0.92388 0.94446 0.87703 0.95452 0.92851 0.92015 0.92724 0.92244 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 8.37 59.85 0.50 1.10 16 2 N -0.63 -8.30 2.79 -203.57 -0.57 -8.87 16 3 C 0.10 1.02 5.43 -4.04 -0.02 1.00 16 4 C 0.43 5.37 3.29 37.16 0.12 5.49 16 5 F -0.19 -2.37 16.18 2.25 0.04 -2.33 16 6 F -0.19 -2.17 17.32 2.25 0.04 -2.13 16 7 F -0.17 -2.75 15.94 2.25 0.04 -2.71 16 8 C 0.71 12.32 7.56 -86.91 -0.66 11.66 16 9 O -0.58 -11.75 14.78 5.29 0.08 -11.67 16 10 N -0.62 -10.94 2.85 -178.50 -0.51 -11.44 16 11 C 0.13 2.61 6.34 -3.71 -0.02 2.59 16 12 C -0.12 -2.82 5.16 -26.59 -0.14 -2.96 16 13 C 0.05 1.17 2.06 -91.71 -0.19 0.98 16 14 C -0.52 -13.37 8.56 -34.44 -0.29 -13.66 16 15 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.46 11.30 55.43 0.63 -23.83 16 18 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.13 -2.28 4.86 -26.61 -0.13 -2.41 16 23 C 0.07 1.05 5.38 -3.72 -0.02 1.03 16 24 H 0.07 0.54 6.75 -51.93 -0.35 0.19 16 25 H 0.07 0.62 7.20 -51.93 -0.37 0.25 16 26 H 0.10 1.33 3.70 -51.93 -0.19 1.13 16 27 H 0.12 0.75 8.07 -51.93 -0.42 0.33 16 28 H 0.13 1.32 7.54 -51.93 -0.39 0.93 16 29 H 0.07 1.44 7.34 -51.92 -0.38 1.06 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 2.67 6.03 -51.93 -0.31 2.36 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.98 6.71 -51.93 -0.35 0.64 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.19 3.06 -71.33 -0.22 0.97 16 LS Contribution 307.48 15.07 4.63 4.63 Total: -1.00 -30.38 307.48 -6.23 -36.62 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.64 Total: -0.28 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.94 Total: 6.39 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.45 Total: -44.15 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.11 Total: -7.18 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.38 -6.23 -36.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334265347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.722 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds