Wall clock time and date at job start Tue Mar 31 2020 07:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 120.00003 * 2 1 4 4 C 1.52998 * 109.47377 * 270.00201 * 3 2 1 5 5 F 1.39901 * 109.46996 * 59.99535 * 4 3 2 6 6 F 1.39898 * 109.47132 * 180.02562 * 4 3 2 7 7 F 1.39900 * 109.47009 * 299.99985 * 4 3 2 8 8 C 1.34778 * 120.00197 * 180.02562 * 2 1 3 9 9 O 1.21580 * 119.99853 * 172.58201 * 8 2 1 10 10 N 1.34783 * 119.99567 * 352.58084 * 8 2 1 11 11 C 1.46919 * 120.62698 * 155.54977 * 10 8 2 12 12 C 1.53196 * 108.89375 * 233.55994 * 11 10 8 13 13 C 1.53070 * 109.29076 * 305.57892 * 12 11 10 14 14 C 1.50706 * 109.44195 * 181.23595 * 13 12 11 15 15 H 1.07997 * 119.99979 * 239.79629 * 14 13 12 16 16 C 1.37869 * 119.99728 * 59.79189 * 14 13 12 17 17 N 1.31520 * 120.00559 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47000 * 60.00235 * 18 16 14 20 20 H 1.48493 * 109.47366 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47112 * 300.00458 * 18 16 14 22 22 C 1.53046 * 109.65916 * 61.15344 * 13 12 11 23 23 C 1.46922 * 120.63073 * 335.57437 * 10 8 2 24 24 H 1.08996 * 109.46969 * 272.92375 * 1 2 3 25 25 H 1.09005 * 109.46901 * 32.92256 * 1 2 3 26 26 H 1.08993 * 109.47200 * 152.91759 * 1 2 3 27 27 H 1.09000 * 109.47024 * 30.00270 * 3 2 1 28 28 H 1.08997 * 109.46878 * 150.00214 * 3 2 1 29 29 H 1.09007 * 109.58667 * 353.41651 * 11 10 8 30 30 H 1.09000 * 109.58724 * 113.70221 * 11 10 8 31 31 H 1.09001 * 109.49537 * 65.38911 * 12 11 10 32 32 H 1.08997 * 109.49816 * 185.48813 * 12 11 10 33 33 H 1.09002 * 109.35372 * 301.13008 * 13 12 11 34 34 H 0.96992 * 120.00227 * 179.97438 * 17 16 14 35 35 H 1.09004 * 109.49575 * 178.74590 * 22 13 12 36 36 H 1.09001 * 109.52110 * 58.67019 * 22 13 12 37 37 H 1.08999 * 109.58336 * 246.15787 * 23 10 8 38 38 H 1.09004 * 109.58841 * 6.43692 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 9 1.2301 1.8777 -2.1019 6 9 3.1525 2.9218 -1.4424 7 9 3.2086 0.7356 -2.1020 8 6 2.1389 -1.1672 -0.0005 9 8 3.3471 -1.1715 -0.1365 10 7 1.4734 -2.3296 0.1497 11 6 2.0378 -3.5865 -0.3604 12 6 1.0037 -4.2634 -1.2655 13 6 -0.3104 -4.4269 -0.4977 14 6 -1.3210 -5.1200 -1.3749 15 1 -2.2511 -4.6285 -1.6193 16 6 -1.0581 -6.3813 -1.8654 17 7 0.0744 -6.9800 -1.5674 18 14 -2.3104 -7.2403 -2.9533 19 1 -2.5503 -6.4247 -4.1709 20 1 -1.7924 -8.5755 -3.3455 21 1 -3.5844 -7.4035 -2.2079 22 6 -0.8449 -3.0510 -0.0931 23 6 0.1696 -2.3637 0.8261 24 1 -0.3633 0.0524 1.0263 25 1 -0.3633 0.8627 -0.5586 26 1 -0.3633 -0.9149 -0.4678 27 1 1.6085 2.0284 0.5139 28 1 3.1499 1.1384 0.5138 29 1 2.9417 -3.3758 -0.9322 30 1 2.2788 -4.2443 0.4747 31 1 0.8331 -3.6465 -2.1477 32 1 1.3731 -5.2422 -1.5713 33 1 -0.1345 -5.0253 0.3962 34 1 0.2592 -7.8676 -1.9122 35 1 -1.7917 -3.1691 0.4339 36 1 -0.9982 -2.4432 -0.9848 37 1 0.2559 -2.9227 1.7578 38 1 -0.1581 -1.3462 1.0395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334265347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:48 Heat of formation + Delta-G solvation = -163.564427 kcal Electronic energy + Delta-G solvation = -25394.364788 eV Core-core repulsion = 21243.688917 eV Total energy + Delta-G solvation = -4150.675871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.03654 -48.57487 -48.52795 -41.79792 -38.67386 -37.05348 -35.37190 -32.93834 -32.36466 -30.33004 -28.65216 -27.05977 -24.99921 -24.07928 -23.64253 -21.80625 -20.21361 -19.50033 -19.42497 -18.84014 -18.41125 -18.14310 -17.40445 -16.61435 -16.34353 -15.67714 -15.62794 -15.32894 -15.22865 -15.12262 -14.97072 -14.72683 -14.70456 -14.66880 -14.54013 -14.23233 -13.81784 -13.55395 -13.32921 -13.06932 -12.95862 -12.76751 -12.51950 -12.28550 -12.00130 -11.90124 -11.36838 -11.33685 -10.84066 -10.71873 -10.38806 -10.03114 -9.38229 -8.05514 -6.19736 1.30350 1.43595 1.44517 1.51426 1.72542 2.07384 2.45205 2.65051 2.89941 3.08796 3.21179 3.31940 3.94439 3.98497 4.18037 4.31720 4.34087 4.39929 4.50846 4.55230 4.66035 4.70251 4.83903 4.94913 5.01253 5.18479 5.21238 5.35637 5.46287 5.52562 5.66020 5.85086 6.00198 6.14221 6.39643 6.80008 6.92698 7.36175 7.48827 8.97465 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.004122 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.872505 B = 6791.005627 C = 6913.705645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.627 5.627 3 C 0.099 3.901 4 C 0.426 3.574 5 F -0.187 7.187 6 F -0.182 7.182 7 F -0.197 7.197 8 C 0.705 3.295 9 O -0.616 6.616 10 N -0.624 5.624 11 C 0.145 3.855 12 C -0.111 4.111 13 C 0.045 3.955 14 C -0.531 4.531 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.949 3.051 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.269 1.269 22 C -0.117 4.117 23 C 0.074 3.926 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.172 0.828 28 H 0.124 0.876 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.000 1.000 34 H 0.259 0.741 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 18.800 5.994 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.363 5.363 3 C -0.027 4.027 4 C 0.370 3.630 5 F -0.169 7.169 6 F -0.164 7.164 7 F -0.179 7.179 8 C 0.409 3.591 9 O -0.495 6.495 10 N -0.360 5.360 11 C 0.021 3.979 12 C -0.150 4.150 13 C 0.027 3.973 14 C -0.569 4.569 15 H 0.074 0.926 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.775 3.225 19 H -0.200 1.200 20 H -0.215 1.215 21 H -0.194 1.194 22 C -0.155 4.155 23 C -0.046 4.046 24 H 0.123 0.877 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.189 0.811 28 H 0.142 0.858 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.018 0.982 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.280 18.600 5.874 19.508 hybrid contribution -0.270 -1.098 -1.267 1.698 sum 0.010 17.502 4.607 18.098 Atomic orbital electron populations 1.22846 0.76907 1.05473 1.03957 1.46935 1.08160 1.03267 1.77961 1.22685 1.03271 0.87720 0.89008 1.21829 0.73796 0.74620 0.92731 1.93158 1.44317 1.95352 1.84038 1.93174 1.79724 1.46428 1.97065 1.93221 1.77102 1.63584 1.83984 1.16108 0.84630 0.81075 0.77320 1.90872 1.13832 1.86461 1.58366 1.47217 1.22513 1.05319 1.60970 1.21382 0.96003 0.83461 0.97010 1.21809 0.97115 0.99427 0.96695 1.18598 0.92284 0.92297 0.94127 1.21585 1.03516 1.01028 1.30750 0.92586 1.25707 0.96946 0.98259 0.97668 1.69978 1.24645 1.14713 1.46348 0.85754 0.79764 0.77524 0.79441 1.20040 1.21471 1.19424 1.21937 0.98180 0.96646 0.98709 1.23031 0.81464 1.05455 0.94671 0.87718 0.88804 0.89927 0.81064 0.85799 0.92175 0.92657 0.95894 0.91065 0.98230 0.93171 0.90608 0.92557 0.92067 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.79 8.37 127.77 1.07 1.86 16 2 N -0.63 -14.41 2.79 -916.23 -2.56 -16.97 16 3 C 0.10 1.72 5.43 86.38 0.47 2.19 16 4 C 0.43 9.71 3.29 71.98 0.24 9.95 16 5 F -0.19 -4.27 16.18 44.97 0.73 -3.54 16 6 F -0.18 -3.83 17.32 44.97 0.78 -3.05 16 7 F -0.20 -6.35 15.94 44.97 0.72 -5.63 16 8 C 0.71 23.46 7.56 179.05 1.35 24.81 16 9 O -0.62 -24.81 14.78 -3.97 -0.06 -24.87 16 10 N -0.62 -21.48 2.85 -836.93 -2.38 -23.87 16 11 C 0.14 5.91 6.34 86.37 0.55 6.46 16 12 C -0.11 -5.24 5.16 30.68 0.16 -5.08 16 13 C 0.05 2.12 2.06 -11.50 -0.02 2.10 16 14 C -0.53 -27.76 8.56 25.60 0.22 -27.54 16 15 H 0.06 2.84 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.69 5.30 84.65 0.45 1.13 16 17 N -0.92 -51.98 11.30 21.45 0.24 -51.73 16 18 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C -0.12 -4.02 4.86 30.67 0.15 -3.87 16 23 C 0.07 2.08 5.38 86.36 0.46 2.55 16 24 H 0.11 1.01 6.75 -2.39 -0.02 0.99 16 25 H 0.09 1.18 7.20 -2.38 -0.02 1.16 16 26 H 0.08 1.80 3.70 -2.39 -0.01 1.79 16 27 H 0.17 1.17 8.07 -2.39 -0.02 1.15 16 28 H 0.12 2.28 7.54 -2.39 -0.02 2.26 16 29 H 0.06 2.55 7.34 -2.38 -0.02 2.54 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 3.82 6.03 -2.39 -0.01 3.81 16 33 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 35 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.06 1.93 6.71 -2.39 -0.02 1.91 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.14 2.79 3.06 -20.61 -0.06 2.72 16 Total: -1.00 -68.77 307.48 5.63 -63.14 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.04 Total: 7.27 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.09 Total: 14.56 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -4.69 Total: -92.57 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.06 Total: -24.87 kcal Atomic # 9 Polarization: -14.45 SS G_CDS: 2.22 Total: -12.22 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -68.77 5.63 -63.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334265347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.420 kcal (2) G-P(sol) polarization free energy of solvation -68.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds