Wall clock time and date at job start Tue Mar 31 2020 07:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46839 * 2 1 4 4 N 1.46498 * 109.47112 * 240.00242 * 2 1 3 5 5 C 1.34772 * 120.00182 * 85.00162 * 4 2 1 6 6 O 1.21587 * 119.99875 * 355.02445 * 5 4 2 7 7 N 1.34777 * 120.00125 * 175.02919 * 5 4 2 8 8 C 1.46918 * 120.63202 * 184.99320 * 7 5 4 9 9 C 1.52761 * 109.01199 * 233.58070 * 8 7 5 10 10 C 1.53041 * 109.38484 * 305.59153 * 9 8 7 11 11 C 1.50695 * 109.45168 * 181.25076 * 10 9 8 12 12 H 1.08003 * 120.00173 * 245.35822 * 11 10 9 13 13 C 1.37876 * 120.00005 * 65.35396 * 11 10 9 14 14 N 1.31515 * 120.00014 * 355.13344 * 13 11 10 15 15 Si 1.86808 * 119.99946 * 175.13832 * 13 11 10 16 16 H 1.48500 * 109.47034 * 95.00083 * 15 13 11 17 17 H 1.48499 * 109.46825 * 215.00208 * 15 13 11 18 18 H 1.48495 * 109.47036 * 334.99878 * 15 13 11 19 19 C 1.53044 * 109.53629 * 61.23540 * 10 9 8 20 20 C 1.46930 * 120.63019 * 5.27166 * 7 5 4 21 21 C 1.53001 * 109.46900 * 120.00072 * 2 1 3 22 22 F 1.39893 * 109.47173 * 60.00031 * 21 2 1 23 23 F 1.39903 * 109.46987 * 180.02562 * 21 2 1 24 24 F 1.39898 * 109.47302 * 299.99782 * 21 2 1 25 25 H 1.09006 * 109.47309 * 300.00188 * 1 2 3 26 26 H 1.08999 * 109.47544 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47009 * 59.99720 * 1 2 3 28 28 H 0.97006 * 119.99737 * 265.00126 * 4 2 1 29 29 H 1.08997 * 109.59025 * 353.42095 * 8 7 5 30 30 H 1.09004 * 109.58891 * 113.84132 * 8 7 5 31 31 H 1.08994 * 109.56751 * 185.55134 * 9 8 7 32 32 H 1.09003 * 109.38036 * 65.51516 * 9 8 7 33 33 H 1.09003 * 109.46075 * 301.21716 * 10 9 8 34 34 H 0.96999 * 119.99818 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.49272 * 178.68537 * 19 10 9 36 36 H 1.08994 * 109.52596 * 58.60463 * 19 10 9 37 37 H 1.08994 * 109.58454 * 246.15886 * 20 7 5 38 38 H 1.09002 * 109.58538 * 6.44265 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.7735 1.1362 -2.4357 7 7 2.6899 -0.6254 -3.4309 8 6 2.9373 0.1248 -4.6697 9 6 2.2743 -0.6068 -5.8354 10 6 2.7637 -2.0564 -5.8696 11 6 2.1342 -2.7712 -7.0374 12 1 1.4462 -3.5856 -6.8649 13 6 2.4364 -2.3853 -8.3261 14 7 3.1980 -1.3339 -8.5362 15 14 1.7641 -3.3559 -9.7737 16 1 0.5108 -2.7217 -10.2556 17 1 2.7660 -3.3680 -10.8697 18 1 1.4811 -4.7497 -9.3465 19 6 2.3705 -2.7603 -4.5688 20 6 3.0399 -2.0518 -3.3870 21 6 2.0399 -0.7213 1.2493 22 9 1.5736 -2.0402 1.2492 23 9 3.4390 -0.7208 1.2496 24 9 1.5737 -0.0618 2.3915 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 2.5155 1.1259 -4.5810 30 1 4.0105 0.1928 -4.8476 31 1 2.5341 -0.1128 -6.7715 32 1 1.1923 -0.5911 -5.7038 33 1 3.8484 -2.0710 -5.9768 34 1 3.4109 -1.0627 -9.4429 35 1 2.6989 -3.7990 -4.6037 36 1 1.2878 -2.7249 -4.4484 37 1 4.1216 -2.1649 -3.4582 38 1 2.6878 -2.4857 -2.4511 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335537981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:37 Heat of formation + Delta-G solvation = -188.834755 kcal Electronic energy + Delta-G solvation = -24736.534657 eV Core-core repulsion = 20584.762983 eV Total energy + Delta-G solvation = -4151.771674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.41419 -47.91940 -47.87126 -40.21265 -37.31186 -35.60451 -33.64634 -31.64911 -30.82448 -29.73502 -26.70621 -26.12854 -23.33209 -22.67120 -21.86496 -20.47675 -19.44164 -18.72573 -18.64988 -18.23265 -17.05589 -16.42709 -15.97775 -15.26413 -14.92421 -14.74550 -14.58822 -14.37653 -14.28563 -14.03862 -14.03474 -13.82115 -13.57050 -13.16620 -13.10721 -12.75299 -12.67854 -12.28129 -12.20768 -11.85443 -11.53504 -11.17798 -10.97439 -10.69153 -10.47963 -10.11624 -9.96939 -9.59499 -9.39813 -9.23359 -8.95848 -8.41020 -8.02071 -6.05130 -4.10807 2.24382 2.65077 3.27108 3.29279 3.34956 3.37777 3.43321 3.77146 3.82736 4.09060 4.39628 4.71454 4.80700 5.22537 5.25569 5.34074 5.46541 5.69575 5.76135 5.90868 5.96516 6.16181 6.19867 6.37332 6.44182 6.54617 6.69113 6.91530 6.97484 7.16521 7.38582 7.66481 7.88744 7.99329 8.09178 8.37268 8.70968 8.92882 9.54437 11.01228 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.034569 B = 0.003454 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.773999 B = 8105.598768 C = 8317.475071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 H 0.129 0.871 4 N -0.748 5.748 5 C 0.712 3.288 6 O -0.593 6.593 7 N -0.612 5.612 8 C 0.126 3.874 9 C -0.122 4.122 10 C 0.049 3.951 11 C -0.515 4.515 12 H 0.054 0.946 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.890 3.110 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.124 4.124 20 C 0.111 3.889 21 C 0.446 3.554 22 F -0.180 7.180 23 F -0.178 7.178 24 F -0.175 7.175 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.401 0.599 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.039 0.961 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 0.772 18.135 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 H 0.146 0.854 4 N -0.408 5.408 5 C 0.414 3.586 6 O -0.472 6.472 7 N -0.348 5.348 8 C 0.004 3.996 9 C -0.160 4.160 10 C 0.031 3.969 11 C -0.553 4.553 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.162 4.162 20 C -0.012 4.012 21 C 0.391 3.609 22 F -0.161 7.161 23 F -0.159 7.159 24 F -0.157 7.157 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.239 0.761 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.741 1.708 17.918 18.083 hybrid contribution -0.129 -1.212 -0.569 1.345 sum -1.870 0.496 17.349 17.457 Atomic orbital electron populations 1.22269 0.91805 1.03998 1.04751 1.21798 0.97276 0.98301 0.80816 0.85361 1.45089 1.73348 1.14042 1.08341 1.15670 0.78590 0.84398 0.79936 1.90887 1.56058 1.16620 1.83612 1.47452 1.64005 1.10741 1.12598 1.21742 1.00004 0.95548 0.82296 1.21949 0.98162 0.99092 0.96830 1.18641 0.96806 0.91184 0.90318 1.21164 1.26831 1.16721 0.90602 0.92740 1.24962 0.95109 0.94935 0.98877 1.69871 1.37483 1.24425 1.20998 0.86618 0.78669 0.80536 0.82402 1.20820 1.21193 1.19928 1.22020 0.99559 0.98938 0.95686 1.21775 1.00083 0.80330 0.99019 1.20800 0.75845 0.77875 0.86355 1.93191 1.88399 1.37773 1.96749 1.93226 1.29564 1.96344 1.96762 1.93195 1.88476 1.80712 1.53280 0.90468 0.91114 0.89214 0.76079 0.90382 0.92276 0.88206 0.94260 0.95173 0.92941 0.91937 0.92866 0.91565 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.24 37.16 0.34 -1.30 16 2 C 0.13 1.36 2.51 -67.93 -0.17 1.19 16 3 H 0.13 1.43 7.65 -51.93 -0.40 1.04 16 4 N -0.75 -9.54 4.89 -58.68 -0.29 -9.82 16 5 C 0.71 11.92 8.26 -86.92 -0.72 11.20 16 6 O -0.59 -11.60 15.43 5.29 0.08 -11.52 16 7 N -0.61 -10.58 2.98 -178.77 -0.53 -11.11 16 8 C 0.13 2.43 6.41 -3.94 -0.03 2.40 16 9 C -0.12 -2.73 5.18 -26.83 -0.14 -2.87 16 10 C 0.05 1.13 2.01 -91.73 -0.18 0.95 16 11 C -0.52 -13.46 8.49 -34.44 -0.29 -13.75 16 12 H 0.05 1.42 7.75 -52.48 -0.41 1.01 16 13 C 0.06 1.67 5.36 -17.82 -0.10 1.57 16 14 N -0.89 -24.41 11.53 55.43 0.64 -23.77 16 15 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 19 C -0.12 -2.30 5.30 -26.61 -0.14 -2.44 16 20 C 0.11 1.70 6.39 -3.71 -0.02 1.68 16 21 C 0.45 4.45 2.75 37.16 0.10 4.55 16 22 F -0.18 -1.81 16.44 2.25 0.04 -1.77 16 23 F -0.18 -1.96 17.24 2.25 0.04 -1.92 16 24 F -0.18 -1.70 16.80 2.25 0.04 -1.66 16 25 H 0.08 0.60 7.80 -51.93 -0.41 0.19 16 26 H 0.07 0.65 7.80 -51.93 -0.41 0.24 16 27 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 28 H 0.40 4.51 5.80 -40.82 -0.24 4.28 16 29 H 0.08 1.54 6.99 -51.93 -0.36 1.17 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 2.51 6.29 -51.93 -0.33 2.18 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.71 5.64 -51.93 -0.29 0.42 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -28.72 319.06 -6.47 -35.19 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.93 Total: 2.74 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.34 Total: 3.19 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.18 Total: -44.70 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.11 Total: -5.35 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.72 -6.47 -35.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335537981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.647 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds