Wall clock time and date at job start Tue Mar 31 2020 07:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46839 * 2 1 4 4 N 1.46498 * 109.47112 * 240.00242 * 2 1 3 5 5 C 1.34772 * 120.00182 * 85.00162 * 4 2 1 6 6 O 1.21587 * 119.99875 * 355.02445 * 5 4 2 7 7 N 1.34777 * 120.00125 * 175.02919 * 5 4 2 8 8 C 1.46918 * 120.63202 * 184.99320 * 7 5 4 9 9 C 1.52761 * 109.01199 * 233.58070 * 8 7 5 10 10 C 1.53041 * 109.38484 * 305.59153 * 9 8 7 11 11 C 1.50695 * 109.45168 * 181.25076 * 10 9 8 12 12 H 1.08003 * 120.00173 * 245.35822 * 11 10 9 13 13 C 1.37876 * 120.00005 * 65.35396 * 11 10 9 14 14 N 1.31515 * 120.00014 * 355.13344 * 13 11 10 15 15 Si 1.86808 * 119.99946 * 175.13832 * 13 11 10 16 16 H 1.48500 * 109.47034 * 95.00083 * 15 13 11 17 17 H 1.48499 * 109.46825 * 215.00208 * 15 13 11 18 18 H 1.48495 * 109.47036 * 334.99878 * 15 13 11 19 19 C 1.53044 * 109.53629 * 61.23540 * 10 9 8 20 20 C 1.46930 * 120.63019 * 5.27166 * 7 5 4 21 21 C 1.53001 * 109.46900 * 120.00072 * 2 1 3 22 22 F 1.39893 * 109.47173 * 60.00031 * 21 2 1 23 23 F 1.39903 * 109.46987 * 180.02562 * 21 2 1 24 24 F 1.39898 * 109.47302 * 299.99782 * 21 2 1 25 25 H 1.09006 * 109.47309 * 300.00188 * 1 2 3 26 26 H 1.08999 * 109.47544 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47009 * 59.99720 * 1 2 3 28 28 H 0.97006 * 119.99737 * 265.00126 * 4 2 1 29 29 H 1.08997 * 109.59025 * 353.42095 * 8 7 5 30 30 H 1.09004 * 109.58891 * 113.84132 * 8 7 5 31 31 H 1.08994 * 109.56751 * 185.55134 * 9 8 7 32 32 H 1.09003 * 109.38036 * 65.51516 * 9 8 7 33 33 H 1.09003 * 109.46075 * 301.21716 * 10 9 8 34 34 H 0.96999 * 119.99818 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.49272 * 178.68537 * 19 10 9 36 36 H 1.08994 * 109.52596 * 58.60463 * 19 10 9 37 37 H 1.08994 * 109.58454 * 246.15886 * 20 7 5 38 38 H 1.09002 * 109.58538 * 6.44265 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.7735 1.1362 -2.4357 7 7 2.6899 -0.6254 -3.4309 8 6 2.9373 0.1248 -4.6697 9 6 2.2743 -0.6068 -5.8354 10 6 2.7637 -2.0564 -5.8696 11 6 2.1342 -2.7712 -7.0374 12 1 1.4462 -3.5856 -6.8649 13 6 2.4364 -2.3853 -8.3261 14 7 3.1980 -1.3339 -8.5362 15 14 1.7641 -3.3559 -9.7737 16 1 0.5108 -2.7217 -10.2556 17 1 2.7660 -3.3680 -10.8697 18 1 1.4811 -4.7497 -9.3465 19 6 2.3705 -2.7603 -4.5688 20 6 3.0399 -2.0518 -3.3870 21 6 2.0399 -0.7213 1.2493 22 9 1.5736 -2.0402 1.2492 23 9 3.4390 -0.7208 1.2496 24 9 1.5737 -0.0618 2.3915 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 2.5155 1.1259 -4.5810 30 1 4.0105 0.1928 -4.8476 31 1 2.5341 -0.1128 -6.7715 32 1 1.1923 -0.5911 -5.7038 33 1 3.8484 -2.0710 -5.9768 34 1 3.4109 -1.0627 -9.4429 35 1 2.6989 -3.7990 -4.6037 36 1 1.2878 -2.7249 -4.4484 37 1 4.1216 -2.1649 -3.4582 38 1 2.6878 -2.4857 -2.4511 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335537981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:36 Heat of formation + Delta-G solvation = -205.435340 kcal Electronic energy + Delta-G solvation = -24737.254513 eV Core-core repulsion = 20584.762983 eV Total energy + Delta-G solvation = -4152.491530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.21793 -48.70518 -48.68926 -41.53464 -38.77076 -36.77533 -35.39344 -33.22293 -32.27570 -31.11359 -27.98568 -27.43021 -24.92112 -24.07347 -23.05739 -21.81372 -20.79273 -19.72534 -19.49365 -19.39152 -18.42861 -18.09242 -17.19721 -16.55146 -16.49511 -15.96298 -15.59752 -15.32543 -15.22274 -15.10246 -14.90221 -14.84359 -14.82794 -14.63723 -14.50636 -14.16326 -14.04528 -13.57700 -13.40590 -13.08751 -12.92178 -12.81836 -12.46949 -12.37932 -12.16140 -11.93517 -11.43753 -11.37596 -10.96601 -10.80005 -10.53762 -10.39561 -9.48623 -8.07393 -6.19717 1.24195 1.41905 1.44431 1.53510 1.65254 2.01898 2.45217 2.59624 2.66171 2.94733 3.19753 3.20587 3.87872 3.96526 4.03356 4.24283 4.32240 4.48750 4.53717 4.60951 4.69002 4.73948 4.89884 4.97505 5.11822 5.16157 5.19203 5.23116 5.44849 5.46231 5.65003 5.89213 6.00018 6.11607 6.40054 6.81718 6.92229 7.39907 7.48392 8.97090 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.034569 B = 0.003454 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.773999 B = 8105.598768 C = 8317.475071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.123 3.877 3 H 0.125 0.875 4 N -0.734 5.734 5 C 0.713 3.287 6 O -0.624 6.624 7 N -0.617 5.617 8 C 0.139 3.861 9 C -0.109 4.109 10 C 0.045 3.955 11 C -0.533 4.533 12 H 0.052 0.948 13 C 0.015 3.985 14 N -0.915 5.915 15 Si 0.948 3.052 16 H -0.282 1.282 17 H -0.284 1.284 18 H -0.267 1.267 19 C -0.116 4.116 20 C 0.116 3.884 21 C 0.457 3.543 22 F -0.177 7.177 23 F -0.182 7.182 24 F -0.171 7.171 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.411 0.589 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.007 0.993 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -0.340 19.880 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 H 0.143 0.857 4 N -0.394 5.394 5 C 0.415 3.585 6 O -0.505 6.505 7 N -0.353 5.353 8 C 0.016 3.984 9 C -0.148 4.148 10 C 0.026 3.974 11 C -0.571 4.571 12 H 0.070 0.930 13 C -0.184 4.184 14 N -0.554 5.554 15 Si 0.775 3.225 16 H -0.208 1.208 17 H -0.210 1.210 18 H -0.192 1.192 19 C -0.154 4.154 20 C -0.007 4.007 21 C 0.402 3.598 22 F -0.158 7.158 23 F -0.164 7.164 24 F -0.152 7.152 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.250 0.750 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.037 0.558 19.708 19.821 hybrid contribution -0.059 -0.862 -1.081 1.384 sum -2.097 -0.304 18.627 18.747 Atomic orbital electron populations 1.22231 0.90731 1.04558 1.04818 1.21933 0.98090 0.98115 0.80287 0.85687 1.44911 1.72462 1.14323 1.07706 1.15720 0.78149 0.84087 0.80563 1.90870 1.57224 1.18144 1.84237 1.47382 1.64350 1.11430 1.12113 1.21384 0.99707 0.95021 0.82298 1.21696 0.97206 0.99082 0.96859 1.18621 0.95079 0.91693 0.92013 1.21574 1.26748 1.16789 0.91954 0.93010 1.25686 0.95587 0.95786 1.01371 1.69999 1.38575 1.25554 1.21310 0.85696 0.77897 0.79494 0.79460 1.20780 1.21016 1.19172 1.21870 0.99442 0.99460 0.94660 1.21845 1.00640 0.78874 0.99312 1.20509 0.75491 0.77787 0.85974 1.93202 1.88331 1.37566 1.96728 1.93223 1.30026 1.96365 1.96771 1.93210 1.88393 1.80670 1.52929 0.88342 0.90296 0.91212 0.74956 0.90982 0.91858 0.91403 0.95844 0.97473 0.93087 0.90783 0.93477 0.90378 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.24 71.98 0.67 -2.16 16 2 C 0.12 2.38 2.51 44.99 0.11 2.49 16 3 H 0.13 2.58 7.65 -2.39 -0.02 2.56 16 4 N -0.73 -16.93 4.89 -457.82 -2.24 -19.16 16 5 C 0.71 22.78 8.26 179.06 1.48 24.25 16 6 O -0.62 -24.00 15.43 -3.99 -0.06 -24.06 16 7 N -0.62 -20.50 2.98 -837.76 -2.50 -23.00 16 8 C 0.14 5.39 6.41 86.22 0.55 5.94 16 9 C -0.11 -5.04 5.18 30.53 0.16 -4.88 16 10 C 0.04 2.07 2.01 -11.51 -0.02 2.05 16 11 C -0.53 -28.08 8.49 25.60 0.22 -27.86 16 12 H 0.05 2.69 7.75 -2.91 -0.02 2.67 16 13 C 0.01 0.78 5.36 84.65 0.45 1.24 16 14 N -0.91 -51.35 11.53 21.45 0.25 -51.11 16 15 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 C -0.12 -4.16 5.30 30.67 0.16 -4.00 16 20 C 0.12 3.26 6.39 86.36 0.55 3.81 16 21 C 0.46 7.88 2.75 71.98 0.20 8.08 16 22 F -0.18 -3.00 16.44 44.97 0.74 -2.26 16 23 F -0.18 -3.56 17.24 44.97 0.78 -2.79 16 24 F -0.17 -2.85 16.80 44.97 0.76 -2.09 16 25 H 0.10 1.27 7.80 -2.38 -0.02 1.25 16 26 H 0.08 1.23 7.80 -2.39 -0.02 1.21 16 27 H 0.07 1.52 8.10 -2.38 -0.02 1.50 16 28 H 0.41 7.83 5.80 -92.70 -0.54 7.29 16 29 H 0.07 2.88 6.99 -2.39 -0.02 2.86 16 30 H 0.06 2.39 8.14 -2.38 -0.02 2.38 16 31 H 0.07 3.55 6.29 -2.39 -0.02 3.54 16 32 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.10 2.01 5.64 -2.39 -0.01 1.99 16 Total: -1.00 -62.23 319.06 4.83 -57.40 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.55 Total: 13.45 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 4.53 Total: 8.96 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -4.49 Total: -93.27 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.06 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 2.27 Total: -7.14 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -62.23 4.83 -57.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335537981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.036 kcal (2) G-P(sol) polarization free energy of solvation -62.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds