Wall clock time and date at job start Tue Mar 31 2020 06:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47442 * 2 1 4 4 H 1.08995 * 109.47182 * 54.99033 * 3 2 1 5 5 C 1.50698 * 109.47475 * 174.99953 * 3 2 1 6 6 H 1.07996 * 120.00186 * 119.99716 * 5 3 2 7 7 C 1.37878 * 119.99817 * 299.99518 * 5 3 2 8 8 N 1.31516 * 119.99894 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00266 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47303 * 59.99563 * 9 7 5 11 11 H 1.48495 * 109.47487 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46851 * 299.99963 * 9 7 5 13 13 N 1.46509 * 109.46756 * 294.99772 * 3 2 1 14 14 C 1.34773 * 120.00057 * 84.99534 * 13 3 2 15 15 O 1.21588 * 120.00109 * 0.02562 * 14 13 3 16 16 N 1.34777 * 119.99770 * 179.97438 * 14 13 3 17 17 C 1.46500 * 119.99995 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.46596 * 35.00583 * 17 16 14 19 19 C 1.52996 * 109.47249 * 155.00181 * 17 16 14 20 20 C 1.53000 * 117.50435 * 248.62844 * 19 17 16 21 21 C 1.52999 * 60.00067 * 252.50864 * 20 19 17 22 22 C 1.52997 * 109.47473 * 275.00486 * 17 16 14 23 23 F 1.39905 * 109.47157 * 59.99740 * 22 17 16 24 24 F 1.39900 * 109.47010 * 300.00131 * 22 17 16 25 25 F 1.39897 * 109.47422 * 179.97438 * 22 17 16 26 26 H 1.09003 * 109.47461 * 300.00788 * 1 2 3 27 27 H 1.09004 * 109.47206 * 60.00412 * 1 2 3 28 28 H 1.08997 * 109.47768 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47484 * 239.99354 * 2 1 3 30 30 H 1.09005 * 109.47024 * 119.99070 * 2 1 3 31 31 H 0.96999 * 120.00005 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99648 * 265.00556 * 13 3 2 33 33 H 0.96995 * 120.00034 * 0.02562 * 16 14 13 34 34 H 1.09002 * 115.55077 * 34.33091 * 19 17 16 35 35 H 1.09006 * 117.49124 * 359.97438 * 20 19 17 36 36 H 1.08994 * 117.50524 * 145.02171 * 20 19 17 37 37 H 1.09000 * 117.49919 * 252.51109 * 21 20 19 38 38 H 1.08998 * 117.50446 * 107.48315 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3368 2.1729 9 14 6.0048 0.8813 1.3820 10 1 6.4994 2.2815 1.3822 11 1 6.3977 0.2168 2.6506 12 1 6.5974 0.1472 0.2352 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3672 15 8 -0.3412 2.6325 -0.4320 16 7 0.0789 3.2672 -2.5187 17 6 -1.2440 3.8839 -2.6439 18 1 -1.5352 4.3164 -1.6866 19 6 -1.1958 4.9833 -3.7067 20 6 -1.3430 6.4308 -3.2332 21 6 -2.4885 5.7522 -3.9870 22 6 -2.2652 2.8214 -3.0552 23 9 -2.3094 1.8160 -2.0833 24 9 -1.8914 2.2662 -4.2837 25 9 -3.5287 3.4102 -3.1741 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8933 -0.5137 0.8901 31 1 3.8291 -0.0610 2.9500 32 1 2.2720 2.1229 -1.9979 33 1 0.6985 3.2928 -3.2646 34 1 -0.5299 4.7943 -4.5487 35 1 -1.4747 6.5996 -2.1643 36 1 -0.7740 7.1942 -3.7636 37 1 -2.6730 6.0692 -5.0135 38 1 -3.3734 5.4747 -3.4143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344613065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:24 Heat of formation + Delta-G solvation = -162.751802 kcal Electronic energy + Delta-G solvation = -25234.169780 eV Core-core repulsion = 21083.529148 eV Total energy + Delta-G solvation = -4150.640633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.91298 -47.48803 -47.29356 -39.65528 -37.88319 -35.32502 -33.95292 -32.37250 -30.89428 -28.76309 -26.70348 -24.09200 -22.94812 -22.66883 -21.23226 -20.78901 -19.44545 -18.48422 -18.25918 -17.95050 -17.50321 -16.63182 -15.94982 -15.21248 -14.68712 -14.52953 -14.40355 -14.24104 -14.07700 -13.82490 -13.74328 -13.48500 -13.46717 -13.22368 -12.66309 -12.56448 -12.07169 -11.75790 -11.60702 -11.49812 -11.22420 -10.97729 -10.82016 -10.76973 -10.52603 -10.31790 -10.12985 -9.60246 -9.41086 -9.04521 -9.00347 -8.48701 -7.79368 -6.11129 -4.20583 2.72993 2.90472 3.25871 3.31515 3.32646 3.49961 3.79367 3.90156 4.12842 4.31419 4.38918 4.59573 4.63220 4.71646 4.90446 5.01035 5.20226 5.33022 5.41059 5.61465 5.80308 5.85996 6.46483 6.47419 6.55838 6.73272 7.01103 7.17147 7.36948 7.42894 7.50111 7.65985 7.89085 7.99495 8.21355 8.75554 8.86420 9.27594 9.48029 10.94120 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026167 B = 0.004265 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.798621 B = 6562.793745 C = 7180.711233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.719 5.719 14 C 0.694 3.306 15 O -0.579 6.579 16 N -0.745 5.745 17 C 0.165 3.835 18 H 0.128 0.872 19 C -0.177 4.177 20 C -0.160 4.160 21 C -0.171 4.171 22 C 0.434 3.566 23 F -0.166 7.166 24 F -0.186 7.186 25 F -0.186 7.186 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.020 0.980 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.265 0.735 32 H 0.385 0.615 33 H 0.400 0.600 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.015 8.970 -13.216 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.370 5.370 14 C 0.394 3.606 15 O -0.456 6.456 16 N -0.402 5.402 17 C 0.055 3.945 18 H 0.145 0.855 19 C -0.196 4.196 20 C -0.197 4.197 21 C -0.208 4.208 22 C 0.377 3.623 23 F -0.147 7.147 24 F -0.168 7.168 25 F -0.167 7.167 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.217 0.783 33 H 0.235 0.765 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.678 8.763 -12.077 17.785 hybrid contribution 1.420 -0.331 -0.761 1.645 sum -8.258 8.432 -12.837 17.438 Atomic orbital electron populations 1.21824 0.98119 0.97901 1.01505 1.21956 0.92808 0.99850 1.02132 1.18707 0.93894 0.88902 0.79938 0.93250 1.21185 0.90688 1.39151 1.06286 0.92190 1.24871 0.98547 0.94810 0.95386 1.69890 1.35190 1.37466 1.09319 0.86512 0.84885 0.78256 0.77440 1.20232 1.21141 1.20208 1.45781 1.13243 1.58713 1.19248 1.16115 0.83686 0.78676 0.82146 1.90927 1.52018 1.64481 1.38201 1.45086 1.15417 1.62812 1.16915 1.21201 0.82892 0.89099 1.01325 0.85474 1.22340 1.03927 0.92667 1.00639 1.23063 1.01792 0.93355 1.01494 1.23228 0.92616 1.02486 1.02496 1.21449 0.81817 0.83932 0.75056 1.93288 1.96340 1.62688 1.62391 1.93140 1.91226 1.87103 1.45310 1.93104 1.44010 1.83669 1.95944 0.93232 0.93897 0.96130 0.95166 0.88343 0.92500 0.78304 0.76541 0.86132 0.88020 0.88032 0.87986 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.15 0.32 -2.84 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.29 7.17 2.24 -69.08 -0.15 7.02 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.56 11.29 55.43 0.63 -23.94 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.72 -14.60 5.03 -59.81 -0.30 -14.90 16 14 C 0.69 13.43 6.66 -86.92 -0.58 12.85 16 15 O -0.58 -13.26 12.05 5.29 0.06 -13.20 16 16 N -0.75 -10.59 5.00 -58.68 -0.29 -10.88 16 17 C 0.16 2.11 2.35 -67.93 -0.16 1.95 16 18 H 0.13 1.78 7.33 -51.93 -0.38 1.40 16 19 C -0.18 -1.64 5.09 -90.62 -0.46 -2.10 16 20 C -0.16 -1.28 10.18 -26.73 -0.27 -1.55 16 21 C -0.17 -1.37 9.34 -26.73 -0.25 -1.62 16 22 C 0.43 6.16 2.82 37.16 0.10 6.26 16 23 F -0.17 -2.98 15.50 2.25 0.03 -2.94 16 24 F -0.19 -2.58 16.95 2.25 0.04 -2.54 16 25 F -0.19 -2.39 14.50 2.25 0.03 -2.36 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.04 0.98 5.47 -51.93 -0.28 0.70 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 6.74 8.55 -40.82 -0.35 6.39 16 33 H 0.40 4.51 8.56 -40.82 -0.35 4.16 16 34 H 0.12 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.10 0.86 8.05 -51.93 -0.42 0.44 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.11 0.95 6.36 -51.93 -0.33 0.62 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -30.17 320.22 -6.86 -37.03 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -4.87 Total: 9.37 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -2.00 Total: 4.13 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.03 Total: -49.72 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.06 Total: -13.20 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.11 Total: -7.85 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.17 -6.86 -37.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344613065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.718 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds