Wall clock time and date at job start Tue Mar 31 2020 06:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47442 * 2 1 4 4 H 1.08995 * 109.47182 * 54.99033 * 3 2 1 5 5 C 1.50698 * 109.47475 * 174.99953 * 3 2 1 6 6 H 1.07996 * 120.00186 * 119.99716 * 5 3 2 7 7 C 1.37878 * 119.99817 * 299.99518 * 5 3 2 8 8 N 1.31516 * 119.99894 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00266 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47303 * 59.99563 * 9 7 5 11 11 H 1.48495 * 109.47487 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46851 * 299.99963 * 9 7 5 13 13 N 1.46509 * 109.46756 * 294.99772 * 3 2 1 14 14 C 1.34773 * 120.00057 * 84.99534 * 13 3 2 15 15 O 1.21588 * 120.00109 * 0.02562 * 14 13 3 16 16 N 1.34777 * 119.99770 * 179.97438 * 14 13 3 17 17 C 1.46500 * 119.99995 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.46596 * 35.00583 * 17 16 14 19 19 C 1.52996 * 109.47249 * 155.00181 * 17 16 14 20 20 C 1.53000 * 117.50435 * 248.62844 * 19 17 16 21 21 C 1.52999 * 60.00067 * 252.50864 * 20 19 17 22 22 C 1.52997 * 109.47473 * 275.00486 * 17 16 14 23 23 F 1.39905 * 109.47157 * 59.99740 * 22 17 16 24 24 F 1.39900 * 109.47010 * 300.00131 * 22 17 16 25 25 F 1.39897 * 109.47422 * 179.97438 * 22 17 16 26 26 H 1.09003 * 109.47461 * 300.00788 * 1 2 3 27 27 H 1.09004 * 109.47206 * 60.00412 * 1 2 3 28 28 H 1.08997 * 109.47768 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47484 * 239.99354 * 2 1 3 30 30 H 1.09005 * 109.47024 * 119.99070 * 2 1 3 31 31 H 0.96999 * 120.00005 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99648 * 265.00556 * 13 3 2 33 33 H 0.96995 * 120.00034 * 0.02562 * 16 14 13 34 34 H 1.09002 * 115.55077 * 34.33091 * 19 17 16 35 35 H 1.09006 * 117.49124 * 359.97438 * 20 19 17 36 36 H 1.08994 * 117.50524 * 145.02171 * 20 19 17 37 37 H 1.09000 * 117.49919 * 252.51109 * 21 20 19 38 38 H 1.08998 * 117.50446 * 107.48315 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3368 2.1729 9 14 6.0048 0.8813 1.3820 10 1 6.4994 2.2815 1.3822 11 1 6.3977 0.2168 2.6506 12 1 6.5974 0.1472 0.2352 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3672 15 8 -0.3412 2.6325 -0.4320 16 7 0.0789 3.2672 -2.5187 17 6 -1.2440 3.8839 -2.6439 18 1 -1.5352 4.3164 -1.6866 19 6 -1.1958 4.9833 -3.7067 20 6 -1.3430 6.4308 -3.2332 21 6 -2.4885 5.7522 -3.9870 22 6 -2.2652 2.8214 -3.0552 23 9 -2.3094 1.8160 -2.0833 24 9 -1.8914 2.2662 -4.2837 25 9 -3.5287 3.4102 -3.1741 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8933 -0.5137 0.8901 31 1 3.8291 -0.0610 2.9500 32 1 2.2720 2.1229 -1.9979 33 1 0.6985 3.2928 -3.2646 34 1 -0.5299 4.7943 -4.5487 35 1 -1.4747 6.5996 -2.1643 36 1 -0.7740 7.1942 -3.7636 37 1 -2.6730 6.0692 -5.0135 38 1 -3.3734 5.4747 -3.4143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344613065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:24 Heat of formation + Delta-G solvation = -182.556770 kcal Electronic energy + Delta-G solvation = -25235.028588 eV Core-core repulsion = 21083.529148 eV Total energy + Delta-G solvation = -4151.499441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.07430 -48.60383 -48.53589 -41.14352 -38.84366 -37.03525 -35.31964 -34.25654 -32.71462 -30.10262 -28.56025 -25.32320 -24.74901 -23.30130 -22.40264 -22.19113 -21.25549 -19.83851 -19.46441 -19.28822 -18.69548 -17.98599 -17.55329 -16.83727 -16.33087 -15.97688 -15.46596 -15.42010 -15.24501 -15.07544 -14.98738 -14.87056 -14.70158 -14.51816 -14.39718 -14.06564 -13.61814 -13.37063 -13.14670 -12.87103 -12.63341 -12.57711 -12.28311 -12.17690 -12.04182 -11.57402 -11.48781 -11.27039 -11.07670 -11.00850 -10.50766 -10.37603 -9.55278 -8.12940 -6.30050 1.46488 1.49036 1.53768 1.57696 1.71441 2.31478 2.44075 2.62797 2.96171 3.05107 3.15914 3.20554 3.55502 3.68836 3.88438 3.99822 4.11938 4.39098 4.52262 4.60778 4.79055 4.82697 4.99355 5.07109 5.12280 5.25112 5.26510 5.30415 5.47934 5.56607 5.64492 5.76943 5.88393 6.19649 6.26597 6.78083 7.28890 7.38175 7.76440 8.92336 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026167 B = 0.004265 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.798621 B = 6562.793745 C = 7180.711233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.298 3.702 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.717 5.717 14 C 0.694 3.306 15 O -0.617 6.617 16 N -0.726 5.726 17 C 0.167 3.833 18 H 0.113 0.887 19 C -0.184 4.184 20 C -0.154 4.154 21 C -0.164 4.164 22 C 0.432 3.568 23 F -0.192 7.192 24 F -0.182 7.182 25 F -0.177 7.177 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.418 0.582 34 H 0.141 0.859 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 10.002 -15.499 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.369 5.369 14 C 0.394 3.606 15 O -0.497 6.497 16 N -0.383 5.383 17 C 0.058 3.942 18 H 0.130 0.870 19 C -0.203 4.203 20 C -0.191 4.191 21 C -0.202 4.202 22 C 0.376 3.624 23 F -0.173 7.173 24 F -0.163 7.163 25 F -0.159 7.159 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.256 0.744 34 H 0.159 0.841 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.846 9.825 -14.440 19.578 hybrid contribution 1.059 -0.611 -0.076 1.225 sum -7.787 9.214 -14.516 18.875 Atomic orbital electron populations 1.21651 0.97119 0.98666 1.00392 1.21812 0.93553 0.99531 1.01141 1.18241 0.93419 0.88636 0.80315 0.98188 1.21534 0.91307 1.38975 1.06704 0.90921 1.25750 1.03210 0.94388 0.95030 1.70049 1.37111 1.38303 1.09852 0.85425 0.79173 0.78422 0.77452 1.19602 1.21372 1.19026 1.45397 1.14191 1.58920 1.18427 1.16200 0.82903 0.78537 0.82967 1.90910 1.52968 1.65726 1.40070 1.44788 1.16361 1.61450 1.15733 1.21324 0.81383 0.89401 1.02131 0.86965 1.22362 1.05684 0.91981 1.00248 1.23153 1.01753 0.92794 1.01372 1.23312 0.91798 1.01502 1.03554 1.21649 0.82540 0.83560 0.74696 1.93239 1.96513 1.63995 1.63596 1.93145 1.91215 1.87108 1.44867 1.93121 1.43528 1.83370 1.95863 0.95597 0.93678 0.94296 0.94280 0.90972 0.92639 0.76436 0.74442 0.84145 0.88882 0.86013 0.85898 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.51 71.98 0.61 -5.09 16 2 C -0.12 -6.06 5.45 30.59 0.17 -5.90 16 3 C 0.30 15.15 2.24 44.24 0.10 15.25 16 4 H 0.00 0.01 7.58 -2.39 -0.02 0.00 16 5 C -0.55 -28.45 8.73 25.60 0.22 -28.22 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -52.10 11.29 21.45 0.24 -51.86 16 9 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.72 -28.94 5.03 -461.40 -2.32 -31.26 16 14 C 0.69 26.82 6.66 179.06 1.19 28.01 16 15 O -0.62 -28.99 12.05 -3.99 -0.05 -29.04 16 16 N -0.73 -19.70 5.00 -457.82 -2.29 -21.99 16 17 C 0.17 4.09 2.35 44.99 0.11 4.19 16 18 H 0.11 3.14 7.33 -2.39 -0.02 3.12 16 19 C -0.18 -2.94 5.09 -10.79 -0.05 -2.99 16 20 C -0.15 -2.07 10.18 30.59 0.31 -1.76 16 21 C -0.16 -2.21 9.34 30.59 0.29 -1.92 16 22 C 0.43 11.87 2.82 71.98 0.20 12.07 16 23 F -0.19 -6.93 15.50 44.97 0.70 -6.23 16 24 F -0.18 -4.72 16.95 44.97 0.76 -3.95 16 25 F -0.18 -4.39 14.50 44.97 0.65 -3.74 16 26 H 0.02 1.30 7.84 -2.39 -0.02 1.28 16 27 H 0.04 2.08 5.47 -2.38 -0.01 2.07 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 4.02 5.95 -2.38 -0.01 4.01 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.40 13.47 8.55 -92.71 -0.79 12.68 16 33 H 0.42 8.42 8.56 -92.71 -0.79 7.63 16 34 H 0.14 1.72 8.07 -2.39 -0.02 1.70 16 35 H 0.09 1.43 8.05 -2.38 -0.02 1.41 16 36 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.55 6.36 -2.39 -0.02 1.54 16 Total: -1.00 -66.44 320.22 2.85 -63.59 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.47 Total: 25.93 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 3.59 Total: 14.97 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -4.36 Total: -105.10 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.05 Total: -29.04 kcal Atomic # 9 Polarization: -16.03 SS G_CDS: 2.11 Total: -13.92 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -66.44 2.85 -63.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344613065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.966 kcal (2) G-P(sol) polarization free energy of solvation -66.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds