Wall clock time and date at job start Tue Mar 31 2020 06:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46961 * 2 1 4 4 H 1.09003 * 109.46981 * 305.00287 * 3 2 1 5 5 C 1.50698 * 109.47315 * 185.00461 * 3 2 1 6 6 H 1.08000 * 119.99843 * 240.00539 * 5 3 2 7 7 C 1.37875 * 120.00353 * 59.99344 * 5 3 2 8 8 N 1.31520 * 119.99629 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00470 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46865 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47191 * 120.00325 * 9 7 5 12 12 H 1.48502 * 109.47462 * 240.00461 * 9 7 5 13 13 N 1.46499 * 109.47224 * 64.99891 * 3 2 1 14 14 C 1.34774 * 120.00216 * 275.00043 * 13 3 2 15 15 O 1.21589 * 120.00075 * 0.02562 * 14 13 3 16 16 N 1.34779 * 119.99837 * 180.02562 * 14 13 3 17 17 C 1.46502 * 120.00131 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.46859 * 325.00066 * 17 16 14 19 19 C 1.52989 * 109.47178 * 204.99878 * 17 16 14 20 20 C 1.53000 * 117.50008 * 248.61886 * 19 17 16 21 21 C 1.52997 * 60.00347 * 252.51154 * 20 19 17 22 22 C 1.53001 * 109.47319 * 84.99284 * 17 16 14 23 23 F 1.39896 * 109.47233 * 180.02562 * 22 17 16 24 24 F 1.39898 * 109.47445 * 300.00697 * 22 17 16 25 25 F 1.39904 * 109.46825 * 60.00248 * 22 17 16 26 26 H 1.08990 * 109.47396 * 60.00024 * 1 2 3 27 27 H 1.08999 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47158 * 299.99477 * 1 2 3 29 29 H 1.08993 * 109.46858 * 240.00254 * 2 1 3 30 30 H 1.09000 * 109.47174 * 119.99952 * 2 1 3 31 31 H 0.96999 * 119.99618 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99220 * 95.00249 * 13 3 2 33 33 H 0.97003 * 120.00327 * 359.97438 * 16 14 13 34 34 H 1.09004 * 115.56709 * 34.30620 * 19 17 16 35 35 H 1.09002 * 117.49696 * 0.02562 * 20 19 17 36 36 H 1.09002 * 117.50343 * 145.02258 * 20 19 17 37 37 H 1.08999 * 117.49685 * 252.51237 * 21 20 19 38 38 H 1.08999 * 117.52022 * 107.47599 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3813 10 1 6.5987 1.5445 -0.1933 11 1 6.4961 -0.5188 -1.4629 12 1 6.3998 1.6159 -2.6094 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4321 16 7 0.0788 3.2674 2.5184 17 6 -1.2446 3.8832 2.6439 18 1 -1.5366 4.3151 1.6866 19 6 -1.1968 4.9830 3.7063 20 6 -1.9629 4.7412 5.0084 21 6 -2.4901 5.7509 3.9870 22 6 -2.2649 2.8200 3.0559 23 9 -3.5287 3.4079 3.1751 24 9 -2.3086 1.8143 2.0844 25 9 -1.8902 2.2655 4.2845 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1232 1.9977 33 1 0.6983 3.2931 3.2644 34 1 -0.2594 5.5358 3.7692 35 1 -2.5007 3.7983 5.1083 36 1 -1.5297 5.1349 5.9279 37 1 -2.4035 6.8089 4.2344 38 1 -3.3748 5.4728 3.4143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344613066.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:27 Heat of formation + Delta-G solvation = -152.752673 kcal Electronic energy + Delta-G solvation = -25379.982212 eV Core-core repulsion = 21229.775174 eV Total energy + Delta-G solvation = -4150.207038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.14191 -47.58739 -47.42789 -39.64617 -37.85810 -35.33017 -33.93417 -32.37572 -30.88821 -28.69501 -26.70254 -24.32108 -22.97628 -22.72087 -21.07780 -20.78314 -19.47017 -18.72858 -18.53106 -17.99100 -17.49059 -16.17917 -15.81556 -15.34245 -14.72576 -14.63804 -14.59669 -14.38984 -14.25864 -13.89746 -13.85261 -13.56055 -13.48655 -13.05960 -12.67128 -12.54662 -12.14263 -11.57676 -11.49164 -11.42432 -11.23963 -10.94877 -10.84192 -10.74315 -10.51516 -10.29969 -10.14435 -9.60469 -9.41614 -9.05274 -9.00236 -8.49728 -7.79967 -6.11969 -4.21166 2.65640 2.96238 3.23691 3.31820 3.34180 3.49149 3.72097 3.89024 4.07668 4.28317 4.32457 4.54778 4.58395 4.68254 4.97308 5.15207 5.19812 5.37583 5.42984 5.59672 5.81005 5.86701 6.45459 6.46791 6.55150 6.72638 7.00798 7.16485 7.36586 7.42316 7.49534 7.65915 7.88467 7.99013 8.20785 8.75392 8.85898 9.26948 9.47543 10.93409 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.029735 B = 0.004171 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.436399 B = 6710.650964 C = 7227.967251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.719 5.719 14 C 0.693 3.307 15 O -0.579 6.579 16 N -0.746 5.746 17 C 0.165 3.835 18 H 0.131 0.869 19 C -0.171 4.171 20 C -0.193 4.193 21 C -0.170 4.170 22 C 0.431 3.569 23 F -0.185 7.185 24 F -0.163 7.163 25 F -0.181 7.181 26 H 0.049 0.951 27 H 0.020 0.980 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.385 0.615 33 H 0.401 0.599 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.180 8.212 13.761 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.370 5.370 14 C 0.393 3.607 15 O -0.456 6.456 16 N -0.403 5.403 17 C 0.055 3.945 18 H 0.149 0.851 19 C -0.190 4.190 20 C -0.230 4.230 21 C -0.207 4.207 22 C 0.375 3.625 23 F -0.167 7.167 24 F -0.145 7.145 25 F -0.162 7.162 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.217 0.783 33 H 0.235 0.765 34 H 0.147 0.853 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.840 8.009 12.630 17.902 hybrid contribution 1.414 -0.259 0.712 1.604 sum -8.426 7.750 13.342 17.581 Atomic orbital electron populations 1.21824 0.98124 0.97899 1.01501 1.21955 0.92809 0.99842 1.02133 1.18720 0.93944 0.88913 0.79952 0.93228 1.21260 0.90689 1.38965 1.06266 0.92078 1.24877 0.98570 0.94827 0.95396 1.69914 1.35005 1.37622 1.09313 0.86400 0.84882 0.77758 0.78070 1.19798 1.20897 1.20903 1.45780 1.13252 1.58677 1.19260 1.16130 0.83700 0.78695 0.82154 1.90929 1.51999 1.64429 1.38222 1.45094 1.15415 1.62915 1.16858 1.21197 0.82785 0.88743 1.01811 0.85109 1.22408 0.99022 1.00478 0.97084 1.23672 1.03450 1.02535 0.93327 1.23224 0.96643 0.97983 1.02858 1.21469 0.81889 0.84157 0.75015 1.93109 1.44022 1.83673 1.95853 1.93292 1.96326 1.62554 1.62285 1.93069 1.91194 1.87065 1.44880 0.93214 0.96131 0.93916 0.88344 0.95160 0.92613 0.78286 0.76458 0.85288 0.87014 0.88104 0.88064 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.29 7.13 2.24 -69.08 -0.15 6.98 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.53 11.29 55.43 0.63 -23.90 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.72 -14.54 5.03 -59.81 -0.30 -14.84 16 14 C 0.69 13.35 6.67 -86.92 -0.58 12.77 16 15 O -0.58 -13.21 12.05 5.29 0.06 -13.14 16 16 N -0.75 -10.50 5.00 -58.68 -0.29 -10.80 16 17 C 0.16 2.09 2.51 -67.93 -0.17 1.92 16 18 H 0.13 1.82 7.58 -51.93 -0.39 1.42 16 19 C -0.17 -1.59 5.85 -90.62 -0.53 -2.12 16 20 C -0.19 -1.67 9.04 -26.73 -0.24 -1.91 16 21 C -0.17 -1.40 9.72 -26.73 -0.26 -1.66 16 22 C 0.43 5.99 2.49 37.16 0.09 6.08 16 23 F -0.18 -2.33 13.63 2.25 0.03 -2.30 16 24 F -0.16 -2.90 15.50 2.25 0.03 -2.86 16 25 F -0.18 -2.40 14.36 2.25 0.03 -2.36 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.97 5.47 -51.93 -0.28 0.69 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.39 6.71 8.55 -40.82 -0.35 6.36 16 33 H 0.40 4.50 8.62 -40.82 -0.35 4.15 16 34 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.11 1.12 4.51 -51.93 -0.23 0.88 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.11 0.95 6.36 -51.93 -0.33 0.62 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -29.91 313.42 -6.88 -36.79 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.71 Total: 9.86 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.07 Total: 3.45 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.03 Total: -49.53 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.06 Total: -13.14 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 0.10 Total: -7.52 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.91 -6.88 -36.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344613066.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.963 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds