Wall clock time and date at job start Tue Mar 31 2020 06:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46961 * 2 1 4 4 H 1.09003 * 109.46981 * 305.00287 * 3 2 1 5 5 C 1.50698 * 109.47315 * 185.00461 * 3 2 1 6 6 H 1.08000 * 119.99843 * 240.00539 * 5 3 2 7 7 C 1.37875 * 120.00353 * 59.99344 * 5 3 2 8 8 N 1.31520 * 119.99629 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00470 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46865 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47191 * 120.00325 * 9 7 5 12 12 H 1.48502 * 109.47462 * 240.00461 * 9 7 5 13 13 N 1.46499 * 109.47224 * 64.99891 * 3 2 1 14 14 C 1.34774 * 120.00216 * 275.00043 * 13 3 2 15 15 O 1.21589 * 120.00075 * 0.02562 * 14 13 3 16 16 N 1.34779 * 119.99837 * 180.02562 * 14 13 3 17 17 C 1.46502 * 120.00131 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.46859 * 325.00066 * 17 16 14 19 19 C 1.52989 * 109.47178 * 204.99878 * 17 16 14 20 20 C 1.53000 * 117.50008 * 248.61886 * 19 17 16 21 21 C 1.52997 * 60.00347 * 252.51154 * 20 19 17 22 22 C 1.53001 * 109.47319 * 84.99284 * 17 16 14 23 23 F 1.39896 * 109.47233 * 180.02562 * 22 17 16 24 24 F 1.39898 * 109.47445 * 300.00697 * 22 17 16 25 25 F 1.39904 * 109.46825 * 60.00248 * 22 17 16 26 26 H 1.08990 * 109.47396 * 60.00024 * 1 2 3 27 27 H 1.08999 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47158 * 299.99477 * 1 2 3 29 29 H 1.08993 * 109.46858 * 240.00254 * 2 1 3 30 30 H 1.09000 * 109.47174 * 119.99952 * 2 1 3 31 31 H 0.96999 * 119.99618 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99220 * 95.00249 * 13 3 2 33 33 H 0.97003 * 120.00327 * 359.97438 * 16 14 13 34 34 H 1.09004 * 115.56709 * 34.30620 * 19 17 16 35 35 H 1.09002 * 117.49696 * 0.02562 * 20 19 17 36 36 H 1.09002 * 117.50343 * 145.02258 * 20 19 17 37 37 H 1.08999 * 117.49685 * 252.51237 * 21 20 19 38 38 H 1.08999 * 117.52022 * 107.47599 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3813 10 1 6.5987 1.5445 -0.1933 11 1 6.4961 -0.5188 -1.4629 12 1 6.3998 1.6159 -2.6094 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4321 16 7 0.0788 3.2674 2.5184 17 6 -1.2446 3.8832 2.6439 18 1 -1.5366 4.3151 1.6866 19 6 -1.1968 4.9830 3.7063 20 6 -1.9629 4.7412 5.0084 21 6 -2.4901 5.7509 3.9870 22 6 -2.2649 2.8200 3.0559 23 9 -3.5287 3.4079 3.1751 24 9 -2.3086 1.8143 2.0844 25 9 -1.8902 2.2655 4.2845 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1232 1.9977 33 1 0.6983 3.2931 3.2644 34 1 -0.2594 5.5358 3.7692 35 1 -2.5007 3.7983 5.1083 36 1 -1.5297 5.1349 5.9279 37 1 -2.4035 6.8089 4.2344 38 1 -3.3748 5.4728 3.4143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344613066.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:27 Heat of formation + Delta-G solvation = -172.499607 kcal Electronic energy + Delta-G solvation = -25380.838503 eV Core-core repulsion = 21229.775174 eV Total energy + Delta-G solvation = -4151.063329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.27008 -48.66707 -48.66424 -41.13573 -38.82908 -37.04117 -35.29841 -34.25628 -32.70488 -30.03122 -28.54213 -25.47311 -24.82071 -23.41417 -22.40511 -22.00516 -21.26955 -19.98196 -19.72045 -19.38315 -18.70725 -17.86929 -17.30287 -16.64192 -16.29680 -16.10509 -15.65710 -15.51388 -15.40715 -15.28669 -15.04487 -14.98367 -14.76982 -14.51968 -14.17399 -13.99892 -13.65834 -13.39500 -13.15744 -12.82870 -12.68725 -12.42463 -12.15943 -12.14205 -12.03412 -11.58800 -11.48802 -11.25900 -11.05549 -10.98889 -10.52452 -10.38204 -9.55275 -8.13460 -6.30256 1.45376 1.46610 1.50509 1.59295 1.73777 2.29857 2.44000 2.67204 2.91750 2.94303 3.14575 3.17674 3.46687 3.63656 3.88701 4.00274 4.30901 4.36179 4.52389 4.60740 4.79024 4.81318 4.97671 5.07343 5.12466 5.23951 5.25135 5.29685 5.47969 5.56747 5.64860 5.77039 5.88409 6.19704 6.26812 6.78481 7.29007 7.38087 7.76410 8.92290 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.029735 B = 0.004171 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.436399 B = 6710.650964 C = 7227.967251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.001 0.999 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.717 5.717 14 C 0.694 3.306 15 O -0.616 6.616 16 N -0.726 5.726 17 C 0.166 3.834 18 H 0.117 0.883 19 C -0.173 4.173 20 C -0.190 4.190 21 C -0.163 4.163 22 C 0.430 3.570 23 F -0.177 7.177 24 F -0.190 7.190 25 F -0.175 7.175 26 H 0.025 0.975 27 H 0.038 0.962 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.418 0.582 34 H 0.149 0.851 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 9.315 15.996 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.583 4.583 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.369 5.369 14 C 0.394 3.606 15 O -0.496 6.496 16 N -0.383 5.383 17 C 0.056 3.944 18 H 0.135 0.865 19 C -0.191 4.191 20 C -0.226 4.226 21 C -0.200 4.200 22 C 0.373 3.627 23 F -0.158 7.158 24 F -0.171 7.171 25 F -0.157 7.157 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.236 0.764 33 H 0.256 0.744 34 H 0.166 0.834 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.995 9.140 14.947 19.694 hybrid contribution 1.044 -0.570 0.053 1.191 sum -7.951 8.570 15.000 19.017 Atomic orbital electron populations 1.21652 0.97114 0.98666 1.00402 1.21811 0.93564 0.99526 1.01141 1.18253 0.93449 0.88653 0.80344 0.98141 1.21595 0.91303 1.38767 1.06640 0.90899 1.25751 1.03201 0.94426 0.95058 1.70066 1.36959 1.38452 1.09881 0.85320 0.79221 0.77709 0.78189 1.18376 1.20668 1.21096 1.45394 1.14204 1.58885 1.18429 1.16211 0.82908 0.78549 0.82971 1.90913 1.52948 1.65677 1.40093 1.44787 1.16341 1.61549 1.15662 1.21338 0.81323 0.89060 1.02671 0.86510 1.22390 1.00592 0.99734 0.96409 1.23697 1.02956 1.02112 0.93848 1.23321 0.95474 0.99169 1.02066 1.21633 0.82566 0.83758 0.74705 1.93125 1.43551 1.83383 1.95784 1.93242 1.96497 1.63859 1.63514 1.93083 1.91169 1.87080 1.44340 0.95577 0.94305 0.93671 0.90994 0.94261 0.92658 0.76422 0.74391 0.83366 0.88506 0.85988 0.85795 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -6.05 5.45 30.60 0.17 -5.88 16 3 C 0.30 15.05 2.24 44.25 0.10 15.15 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 5 C -0.54 -28.27 8.73 25.60 0.22 -28.05 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.92 -52.04 11.29 21.45 0.24 -51.79 16 9 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 10 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 13 N -0.72 -28.77 5.03 -461.41 -2.32 -31.09 16 14 C 0.69 26.63 6.67 179.05 1.19 27.82 16 15 O -0.62 -28.84 12.05 -4.00 -0.05 -28.88 16 16 N -0.73 -19.49 5.00 -457.82 -2.29 -21.78 16 17 C 0.17 4.01 2.51 44.99 0.11 4.13 16 18 H 0.12 3.23 7.58 -2.39 -0.02 3.21 16 19 C -0.17 -2.75 5.85 -10.80 -0.06 -2.81 16 20 C -0.19 -2.72 9.04 30.59 0.28 -2.44 16 21 C -0.16 -2.23 9.72 30.60 0.30 -1.94 16 22 C 0.43 11.61 2.49 71.98 0.18 11.79 16 23 F -0.18 -4.31 13.63 44.97 0.61 -3.70 16 24 F -0.19 -6.77 15.50 44.97 0.70 -6.07 16 25 F -0.18 -4.40 14.36 44.97 0.65 -3.75 16 26 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 2.07 5.47 -2.38 -0.01 2.06 16 29 H 0.07 4.00 5.95 -2.39 -0.01 3.99 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.40 13.40 8.55 -92.71 -0.79 12.61 16 33 H 0.42 8.39 8.62 -92.71 -0.80 7.59 16 34 H 0.15 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.10 1.72 4.51 -2.39 -0.01 1.71 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.10 1.56 6.36 -2.39 -0.02 1.55 16 Total: -1.00 -65.92 313.42 2.65 -63.27 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.47 Total: 26.25 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 3.55 Total: 13.99 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -4.36 Total: -104.67 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.88 kcal Atomic # 9 Polarization: -15.48 SS G_CDS: 1.96 Total: -13.53 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -65.92 2.65 -63.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344613066.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.227 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds