Wall clock time and date at job start Tue Mar 31 2020 07:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47354 * 2 1 4 4 N 1.46500 * 109.46994 * 239.99502 * 2 1 3 5 5 C 1.34776 * 119.99794 * 85.00390 * 4 2 1 6 6 O 1.21592 * 119.99973 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00261 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00107 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47128 * 90.00402 * 8 7 5 10 10 H 1.08000 * 119.99302 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00436 * 179.72498 * 9 8 7 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47154 * 89.99418 * 13 11 9 15 15 H 1.48493 * 109.47010 * 209.99942 * 13 11 9 16 16 H 1.48502 * 109.46736 * 329.99638 * 13 11 9 17 17 C 1.46497 * 119.99658 * 0.02562 * 7 5 4 18 18 C 1.53008 * 109.46926 * 269.99594 * 17 7 5 19 19 C 1.52995 * 117.49765 * 243.62387 * 18 17 7 20 20 C 1.52997 * 60.00108 * 252.51033 * 19 18 17 21 21 C 1.52998 * 109.46731 * 120.00032 * 2 1 3 22 22 F 1.39905 * 109.47007 * 179.97438 * 21 2 1 23 23 F 1.39905 * 109.47324 * 299.99436 * 21 2 1 24 24 F 1.39900 * 109.47509 * 59.99748 * 21 2 1 25 25 H 1.08999 * 109.47354 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47081 * 300.00305 * 1 2 3 27 27 H 1.09006 * 109.46872 * 60.00038 * 1 2 3 28 28 H 0.96995 * 120.00570 * 265.00326 * 4 2 1 29 29 H 1.09001 * 109.47786 * 330.00675 * 8 7 5 30 30 H 1.08998 * 109.47558 * 210.00538 * 8 7 5 31 31 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.47569 * 29.99343 * 17 7 5 33 33 H 1.08997 * 109.47185 * 150.00014 * 17 7 5 34 34 H 1.09004 * 115.54514 * 29.33287 * 18 17 7 35 35 H 1.08995 * 117.50145 * 359.97438 * 19 18 17 36 36 H 1.08999 * 117.49978 * 145.02090 * 19 18 17 37 37 H 1.09000 * 117.49824 * 252.51694 * 20 19 18 38 38 H 1.09002 * 117.50089 * 107.48886 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8584 1.1615 -2.4116 7 7 2.5968 -0.6537 -3.4575 8 6 2.7362 0.0770 -4.7195 9 6 4.1184 0.6716 -4.8057 10 1 4.8222 0.5206 -4.0006 11 6 4.4859 1.4039 -5.9145 12 7 3.6305 1.5832 -6.8973 13 14 6.1993 2.1404 -6.0216 14 1 7.1167 1.1676 -6.6676 15 1 6.1527 3.3870 -6.8270 16 1 6.6904 2.4518 -4.6552 17 6 2.9452 -2.0751 -3.3916 18 6 4.4212 -2.2216 -3.0162 19 6 5.3506 -2.8700 -4.0441 20 6 4.9533 -3.6367 -2.7812 21 6 2.0399 -0.7213 1.2493 22 9 3.4390 -0.7218 1.2490 23 9 1.5737 -0.0617 2.3916 24 9 1.5736 -2.0402 1.2493 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 1.9944 0.8745 -4.7616 30 1 2.5822 -0.6068 -5.5542 31 1 3.8892 2.0981 -7.6776 32 1 2.3284 -2.5659 -2.6388 33 1 2.7697 -2.5376 -4.3629 34 1 4.8314 -1.4209 -2.4007 35 1 4.9105 -3.1926 -4.9877 36 1 6.3725 -2.4959 -4.1052 37 1 5.7138 -3.7669 -2.0113 38 1 4.2518 -4.4633 -2.8939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344621638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:21 Heat of formation + Delta-G solvation = -174.738137 kcal Electronic energy + Delta-G solvation = -25067.138754 eV Core-core repulsion = 20915.978355 eV Total energy + Delta-G solvation = -4151.160399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.20912 -48.69901 -48.67412 -41.28392 -38.49734 -36.95700 -35.94209 -34.61904 -32.04859 -29.50520 -27.66571 -27.34550 -25.03930 -23.13813 -22.94782 -21.95373 -21.15605 -19.67738 -19.48804 -19.36011 -18.62316 -18.13345 -17.26913 -16.55669 -16.48247 -16.08787 -15.69172 -15.60002 -15.23019 -15.09476 -14.97789 -14.83215 -14.81997 -14.65831 -14.32577 -14.23883 -13.73613 -13.60247 -13.26382 -12.99856 -12.96673 -12.66780 -12.51152 -12.34844 -12.26023 -12.20397 -11.61403 -11.31419 -11.10292 -10.73196 -10.56268 -10.41889 -9.40064 -8.16440 -6.27243 1.32653 1.36854 1.39312 1.49012 1.74128 2.20230 2.41288 2.60490 2.80928 2.96935 3.05078 3.14042 3.25386 3.86745 3.93466 4.00963 4.05713 4.21437 4.40750 4.52399 4.60152 4.71059 4.79445 4.88099 4.99784 5.12935 5.13257 5.21687 5.28905 5.35029 5.36429 5.62467 5.79379 6.03506 6.13993 6.80321 7.05161 7.37494 7.64983 8.90656 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.005115 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.383384 B = 5473.160639 C = 6109.058067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 H 0.113 0.887 4 N -0.732 5.732 5 C 0.707 3.293 6 O -0.628 6.628 7 N -0.610 5.610 8 C 0.280 3.720 9 C -0.521 4.521 10 H 0.050 0.950 11 C 0.010 3.990 12 N -0.929 5.929 13 Si 0.957 3.043 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.277 1.277 17 C 0.145 3.855 18 C -0.178 4.178 19 C -0.181 4.181 20 C -0.147 4.147 21 C 0.460 3.540 22 F -0.185 7.185 23 F -0.171 7.171 24 F -0.173 7.173 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.410 0.590 29 H 0.001 0.999 30 H 0.026 0.974 31 H 0.265 0.735 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 -12.027 15.179 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 H 0.131 0.869 4 N -0.393 5.393 5 C 0.408 3.592 6 O -0.508 6.508 7 N -0.343 5.343 8 C 0.158 3.842 9 C -0.560 4.560 10 H 0.068 0.932 11 C -0.189 4.189 12 N -0.570 5.570 13 Si 0.782 3.218 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.202 1.202 17 C 0.022 3.978 18 C -0.198 4.198 19 C -0.218 4.218 20 C -0.185 4.185 21 C 0.405 3.595 22 F -0.166 7.166 23 F -0.152 7.152 24 F -0.155 7.155 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.249 0.751 29 H 0.019 0.981 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.412 -11.122 14.954 18.947 hybrid contribution 1.201 0.396 -0.301 1.300 sum -2.211 -10.726 14.653 18.293 Atomic orbital electron populations 1.22209 0.90317 1.04757 1.04644 1.21902 0.98339 0.97934 0.80647 0.86886 1.44836 1.72871 1.14116 1.07434 1.15861 0.78273 0.84264 0.80776 1.90872 1.59068 1.16178 1.84694 1.47331 1.66306 1.11159 1.09515 1.18679 0.95487 0.90771 0.79254 1.21619 0.98903 1.32314 1.03200 0.93167 1.25698 1.01105 0.96647 0.95421 1.70034 1.36633 1.41780 1.08532 0.85576 0.80243 0.78165 0.77789 1.19134 1.20844 1.20239 1.21219 0.93293 0.80353 1.02956 1.22624 0.95633 0.97029 1.04498 1.22916 0.99775 1.04529 0.94581 1.23069 1.03279 0.93261 0.98864 1.20452 0.75399 0.77853 0.85832 1.93221 1.30244 1.96379 1.96766 1.93205 1.88375 1.80717 1.52908 1.93192 1.88284 1.37263 1.96722 0.89652 0.88408 0.91516 0.75098 0.98051 0.95573 0.92645 0.88392 0.89808 0.90374 0.88861 0.90164 0.87924 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.24 71.98 0.67 -2.65 16 2 C 0.12 2.98 2.55 44.99 0.11 3.09 16 3 H 0.11 3.25 7.58 -2.39 -0.02 3.23 16 4 N -0.73 -21.27 4.85 -457.80 -2.22 -23.49 16 5 C 0.71 28.88 8.24 179.05 1.48 30.35 16 6 O -0.63 -31.75 15.58 -4.01 -0.06 -31.81 16 7 N -0.61 -25.16 2.46 -844.19 -2.07 -27.23 16 8 C 0.28 14.69 5.20 85.64 0.45 15.14 16 9 C -0.52 -29.49 9.39 25.60 0.24 -29.25 16 10 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 11 C 0.01 0.56 5.46 84.65 0.46 1.02 16 12 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 13 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 C 0.14 4.34 5.50 86.38 0.47 4.81 16 18 C -0.18 -5.27 6.01 -10.79 -0.06 -5.33 16 19 C -0.18 -5.14 10.18 30.59 0.31 -4.83 16 20 C -0.15 -3.10 10.25 30.59 0.31 -2.79 16 21 C 0.46 9.83 2.75 71.98 0.20 10.03 16 22 F -0.18 -4.57 17.24 44.97 0.78 -3.79 16 23 F -0.17 -3.47 16.80 44.97 0.76 -2.71 16 24 F -0.17 -3.34 16.44 44.97 0.74 -2.60 16 25 H 0.08 1.47 7.80 -2.39 -0.02 1.45 16 26 H 0.10 1.58 7.80 -2.39 -0.02 1.56 16 27 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.41 9.74 6.04 -92.71 -0.56 9.18 16 29 H 0.00 0.08 7.42 -2.39 -0.02 0.07 16 30 H 0.03 1.39 7.89 -2.39 -0.02 1.38 16 31 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.10 2.17 6.36 -2.39 -0.02 2.16 16 33 H 0.08 2.47 7.63 -2.39 -0.02 2.45 16 34 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 35 H 0.09 2.65 8.03 -2.39 -0.02 2.63 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.85 335.66 5.39 -64.46 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.53 Total: 15.69 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 4.64 Total: 19.59 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -4.01 Total: -106.13 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.06 Total: -31.81 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 2.27 Total: -9.10 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.85 5.39 -64.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344621638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.278 kcal (2) G-P(sol) polarization free energy of solvation -69.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds