Wall clock time and date at job start Tue Mar 31 2020 07:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47147 * 2 1 4 4 C 1.46491 * 120.00229 * 269.99852 * 3 2 1 5 5 C 1.50703 * 109.47210 * 270.00202 * 4 3 2 6 6 H 1.07993 * 119.99862 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99943 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99861 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99902 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47133 * 89.99781 * 9 7 5 11 11 H 1.48500 * 109.47225 * 209.99741 * 9 7 5 12 12 H 1.48496 * 109.47092 * 329.99874 * 9 7 5 13 13 C 1.34784 * 119.99762 * 90.00008 * 3 2 1 14 14 O 1.21591 * 119.99823 * 179.97438 * 13 3 2 15 15 N 1.34772 * 120.00180 * 359.97438 * 13 3 2 16 16 C 1.46499 * 120.00047 * 179.97438 * 15 13 3 17 17 H 1.08996 * 109.47496 * 325.00509 * 16 15 13 18 18 C 1.53001 * 109.47375 * 205.00138 * 16 15 13 19 19 C 1.53000 * 117.50223 * 180.02562 * 18 16 15 20 20 C 1.52997 * 117.49889 * 111.37624 * 18 16 15 21 21 C 1.53000 * 109.46736 * 85.00349 * 16 15 13 22 22 F 1.39902 * 109.46982 * 179.97438 * 21 16 15 23 23 F 1.39898 * 109.47229 * 300.00068 * 21 16 15 24 24 F 1.39903 * 109.47473 * 60.00052 * 21 16 15 25 25 H 1.09000 * 109.47506 * 300.00243 * 1 2 3 26 26 H 1.09005 * 109.47331 * 59.99619 * 1 2 3 27 27 H 1.09002 * 109.47448 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47365 * 240.00328 * 2 1 3 29 29 H 1.08999 * 109.47137 * 119.99712 * 2 1 3 30 30 H 1.08998 * 109.46996 * 29.99887 * 4 3 2 31 31 H 1.09004 * 109.47366 * 150.00147 * 4 3 2 32 32 H 0.97000 * 119.99515 * 180.02562 * 8 7 5 33 33 H 0.97005 * 119.99745 * 0.02562 * 15 13 3 34 34 H 1.09002 * 115.55911 * 325.69052 * 18 16 15 35 35 H 1.08990 * 117.49990 * 145.01974 * 19 18 16 36 36 H 1.09004 * 117.49237 * 359.97438 * 19 18 16 37 37 H 1.08999 * 117.49685 * 0.02562 * 20 18 16 38 38 H 1.08997 * 117.50044 * 214.98097 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8773 8 7 3.3494 3.1267 -3.6174 9 14 5.9139 2.0976 -3.4162 10 1 5.9777 0.8769 -4.2594 11 1 6.3929 3.2653 -4.1986 12 1 6.7737 1.9176 -2.2189 13 6 2.2429 2.0166 1.1673 14 8 2.6487 3.1628 1.1673 15 7 2.0178 1.3814 2.3344 16 6 2.2625 2.0718 3.6032 17 1 3.1222 2.7333 3.4970 18 6 2.5441 1.0414 4.6986 19 6 2.8256 1.5670 6.1076 20 6 3.9636 0.9840 5.2664 21 6 1.0295 2.8947 3.9820 22 9 1.2629 3.5536 5.1938 23 9 0.7720 3.8369 2.9804 24 9 -0.0740 2.0457 4.1183 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6877 -2.0283 31 1 2.0955 3.1411 -1.1383 32 1 3.6755 3.5171 -4.4433 33 1 1.6944 0.4668 2.3344 34 1 1.9984 0.1018 4.6119 35 1 2.4655 0.9732 6.9475 36 1 2.8107 2.6471 6.2540 37 1 4.6968 1.6807 4.8599 38 1 4.3518 0.0068 5.5534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344635027.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:01 Heat of formation + Delta-G solvation = -152.873943 kcal Electronic energy + Delta-G solvation = -25277.589549 eV Core-core repulsion = 21127.377252 eV Total energy + Delta-G solvation = -4150.212297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.89718 -47.46907 -47.28085 -39.73612 -37.84440 -35.37940 -34.16261 -32.67013 -30.11734 -29.14127 -26.68141 -24.11466 -23.05315 -22.66353 -22.51371 -21.19867 -19.40319 -18.34386 -18.17722 -17.68371 -17.19517 -16.46627 -16.35925 -15.16576 -14.61108 -14.55446 -14.36130 -14.25252 -14.05842 -13.81154 -13.63791 -13.58123 -13.46530 -13.29396 -13.11577 -12.75237 -12.20128 -12.05038 -11.80792 -11.68296 -11.56128 -11.18721 -10.92909 -10.78500 -10.74117 -10.51972 -10.48528 -10.11291 -9.64826 -9.33954 -9.01716 -8.41323 -7.65224 -6.01962 -4.06445 2.75536 2.92440 3.30972 3.37908 3.42183 3.51943 3.80329 3.92749 4.15022 4.29683 4.43303 4.51752 4.63346 4.73297 4.75277 4.93663 5.27352 5.29936 5.32651 5.44240 5.59717 5.64451 5.69598 5.83241 5.89291 5.98007 6.21115 6.46949 6.52609 6.76547 7.36968 7.54273 7.67428 7.96305 8.26031 8.61273 8.94341 9.26668 9.58851 11.05967 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.004719 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.852831 B = 5932.177346 C = 6253.270927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 N -0.607 5.607 4 C 0.261 3.739 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.700 3.300 14 O -0.571 6.571 15 N -0.744 5.744 16 C 0.163 3.837 17 H 0.128 0.872 18 C -0.177 4.177 19 C -0.170 4.170 20 C -0.160 4.160 21 C 0.435 3.565 22 F -0.185 7.185 23 F -0.167 7.167 24 F -0.186 7.186 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.400 0.600 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.483 -7.674 17.512 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.016 4.016 3 N -0.342 5.342 4 C 0.142 3.858 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.401 3.599 14 O -0.447 6.447 15 N -0.403 5.403 16 C 0.052 3.948 17 H 0.146 0.854 18 C -0.195 4.195 19 C -0.208 4.208 20 C -0.197 4.197 21 C 0.378 3.622 22 F -0.167 7.167 23 F -0.148 7.148 24 F -0.168 7.168 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.207 -6.680 17.236 18.958 hybrid contribution 0.480 -0.516 -0.379 0.800 sum -3.727 -7.196 16.857 18.704 Atomic orbital electron populations 1.22253 0.96749 1.01399 1.02595 1.21347 0.93515 0.84388 1.02351 1.47552 1.67223 1.13235 1.06145 1.19219 0.96134 0.93540 0.76944 1.21458 0.97007 1.31798 1.06181 0.92512 1.24926 0.97785 0.94946 0.96433 1.69934 1.35670 1.33447 1.14327 0.86504 0.84773 0.77626 0.78531 1.20704 1.21120 1.19977 1.15929 0.79025 0.84762 0.80144 1.90929 1.51709 1.16444 1.85632 1.45198 1.74278 1.17550 1.03250 1.21224 0.94309 0.94460 0.84759 0.85427 1.22327 1.02474 1.00535 0.94200 1.23234 1.02311 1.02641 0.92593 1.23075 0.90619 1.03350 1.02660 1.21437 0.86577 0.79636 0.74506 1.93105 1.94398 1.82534 1.46635 1.93283 1.94791 1.66290 1.60457 1.93134 1.57218 1.70776 1.95678 0.93061 0.91835 0.92155 0.89615 0.92460 0.94866 0.93726 0.92742 0.76356 0.86208 0.87985 0.87243 0.87966 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.15 0.38 -1.93 16 2 C 0.11 1.70 5.89 -4.04 -0.02 1.68 16 3 N -0.61 -12.80 2.46 -180.81 -0.44 -13.24 16 4 C 0.26 6.82 5.16 -5.20 -0.03 6.79 16 5 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 13 C 0.70 14.69 7.81 -86.92 -0.68 14.01 16 14 O -0.57 -14.53 14.49 5.29 0.08 -14.45 16 15 N -0.74 -11.45 4.86 -58.68 -0.29 -11.73 16 16 C 0.16 2.22 2.35 -67.93 -0.16 2.06 16 17 H 0.13 1.93 7.33 -51.93 -0.38 1.55 16 18 C -0.18 -1.74 5.09 -90.62 -0.46 -2.20 16 19 C -0.17 -1.44 9.34 -26.71 -0.25 -1.69 16 20 C -0.16 -1.38 10.18 -26.71 -0.27 -1.65 16 21 C 0.43 6.38 2.82 37.16 0.10 6.49 16 22 F -0.19 -2.45 14.50 2.25 0.03 -2.42 16 23 F -0.17 -3.10 15.67 2.25 0.04 -3.06 16 24 F -0.19 -2.60 16.95 2.25 0.04 -2.56 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 29 H 0.06 0.73 6.36 -51.93 -0.33 0.40 16 30 H 0.03 0.87 8.07 -51.93 -0.42 0.46 16 31 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.40 5.01 6.28 -40.82 -0.26 4.75 16 34 H 0.12 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.11 0.99 6.36 -51.93 -0.33 0.66 16 37 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -33.12 329.64 -6.69 -39.81 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.02 Total: 1.70 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -1.81 Total: 10.05 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.01 Total: -50.85 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 0.11 Total: -8.05 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.12 -6.69 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344635027.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.065 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds