Wall clock time and date at job start Tue Mar 31 2020 07:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47147 * 2 1 4 4 C 1.46491 * 120.00229 * 269.99852 * 3 2 1 5 5 C 1.50703 * 109.47210 * 270.00202 * 4 3 2 6 6 H 1.07993 * 119.99862 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99943 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99861 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99902 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47133 * 89.99781 * 9 7 5 11 11 H 1.48500 * 109.47225 * 209.99741 * 9 7 5 12 12 H 1.48496 * 109.47092 * 329.99874 * 9 7 5 13 13 C 1.34784 * 119.99762 * 90.00008 * 3 2 1 14 14 O 1.21591 * 119.99823 * 179.97438 * 13 3 2 15 15 N 1.34772 * 120.00180 * 359.97438 * 13 3 2 16 16 C 1.46499 * 120.00047 * 179.97438 * 15 13 3 17 17 H 1.08996 * 109.47496 * 325.00509 * 16 15 13 18 18 C 1.53001 * 109.47375 * 205.00138 * 16 15 13 19 19 C 1.53000 * 117.50223 * 180.02562 * 18 16 15 20 20 C 1.52997 * 117.49889 * 111.37624 * 18 16 15 21 21 C 1.53000 * 109.46736 * 85.00349 * 16 15 13 22 22 F 1.39902 * 109.46982 * 179.97438 * 21 16 15 23 23 F 1.39898 * 109.47229 * 300.00068 * 21 16 15 24 24 F 1.39903 * 109.47473 * 60.00052 * 21 16 15 25 25 H 1.09000 * 109.47506 * 300.00243 * 1 2 3 26 26 H 1.09005 * 109.47331 * 59.99619 * 1 2 3 27 27 H 1.09002 * 109.47448 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47365 * 240.00328 * 2 1 3 29 29 H 1.08999 * 109.47137 * 119.99712 * 2 1 3 30 30 H 1.08998 * 109.46996 * 29.99887 * 4 3 2 31 31 H 1.09004 * 109.47366 * 150.00147 * 4 3 2 32 32 H 0.97000 * 119.99515 * 180.02562 * 8 7 5 33 33 H 0.97005 * 119.99745 * 0.02562 * 15 13 3 34 34 H 1.09002 * 115.55911 * 325.69052 * 18 16 15 35 35 H 1.08990 * 117.49990 * 145.01974 * 19 18 16 36 36 H 1.09004 * 117.49237 * 359.97438 * 19 18 16 37 37 H 1.08999 * 117.49685 * 0.02562 * 20 18 16 38 38 H 1.08997 * 117.50044 * 214.98097 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8773 8 7 3.3494 3.1267 -3.6174 9 14 5.9139 2.0976 -3.4162 10 1 5.9777 0.8769 -4.2594 11 1 6.3929 3.2653 -4.1986 12 1 6.7737 1.9176 -2.2189 13 6 2.2429 2.0166 1.1673 14 8 2.6487 3.1628 1.1673 15 7 2.0178 1.3814 2.3344 16 6 2.2625 2.0718 3.6032 17 1 3.1222 2.7333 3.4970 18 6 2.5441 1.0414 4.6986 19 6 2.8256 1.5670 6.1076 20 6 3.9636 0.9840 5.2664 21 6 1.0295 2.8947 3.9820 22 9 1.2629 3.5536 5.1938 23 9 0.7720 3.8369 2.9804 24 9 -0.0740 2.0457 4.1183 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6877 -2.0283 31 1 2.0955 3.1411 -1.1383 32 1 3.6755 3.5171 -4.4433 33 1 1.6944 0.4668 2.3344 34 1 1.9984 0.1018 4.6119 35 1 2.4655 0.9732 6.9475 36 1 2.8107 2.6471 6.2540 37 1 4.6968 1.6807 4.8599 38 1 4.3518 0.0068 5.5534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344635027.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:01 Heat of formation + Delta-G solvation = -173.876391 kcal Electronic energy + Delta-G solvation = -25278.500283 eV Core-core repulsion = 21127.377252 eV Total energy + Delta-G solvation = -4151.123031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.10304 -48.62905 -48.56587 -41.27215 -38.80620 -37.00684 -35.58547 -34.67894 -31.62698 -30.50488 -28.53458 -25.45227 -24.69224 -24.00252 -23.30155 -22.23420 -20.86818 -19.55780 -19.41637 -19.05326 -18.66819 -18.35065 -17.67554 -16.75851 -16.21521 -16.03392 -15.55628 -15.44021 -15.24991 -15.01815 -14.96784 -14.83782 -14.73152 -14.60964 -14.48932 -14.35276 -13.78187 -13.49305 -13.25510 -13.05166 -12.72336 -12.59198 -12.49422 -12.28841 -12.19240 -11.95684 -11.71388 -11.48229 -11.29239 -11.05893 -10.61419 -10.44814 -9.40553 -8.19231 -6.33915 1.37979 1.41226 1.47645 1.52330 1.65866 2.24492 2.40672 2.59821 2.88202 2.94835 3.04778 3.10495 3.33495 3.65107 3.86549 3.96402 4.08243 4.11008 4.33902 4.38490 4.54060 4.82460 4.84110 4.96514 4.98685 5.02300 5.09096 5.20318 5.25559 5.27804 5.36336 5.59224 5.78689 6.05320 6.09413 6.75235 7.06860 7.32950 7.64979 8.87635 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.004719 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.852831 B = 5932.177346 C = 6253.270927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.614 5.614 4 C 0.279 3.721 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.696 3.304 14 O -0.625 6.625 15 N -0.722 5.722 16 C 0.163 3.837 17 H 0.108 0.892 18 C -0.184 4.184 19 C -0.162 4.162 20 C -0.155 4.155 21 C 0.434 3.566 22 F -0.176 7.176 23 F -0.195 7.195 24 F -0.179 7.179 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.025 0.975 31 H -0.004 1.004 32 H 0.266 0.734 33 H 0.417 0.583 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 -10.332 19.148 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.348 5.348 4 C 0.157 3.843 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.398 3.602 14 O -0.504 6.504 15 N -0.381 5.381 16 C 0.053 3.947 17 H 0.126 0.874 18 C -0.202 4.202 19 C -0.199 4.199 20 C -0.192 4.192 21 C 0.377 3.623 22 F -0.157 7.157 23 F -0.177 7.177 24 F -0.160 7.160 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.043 0.957 31 H 0.014 0.986 32 H 0.075 0.925 33 H 0.257 0.743 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.697 -9.413 18.920 21.453 hybrid contribution 0.253 0.329 -0.816 0.916 sum -3.444 -9.084 18.104 20.546 Atomic orbital electron populations 1.22177 0.94838 1.03575 1.01476 1.21693 0.95044 0.81412 1.03955 1.47434 1.67538 1.15165 1.04713 1.18630 0.95328 0.91251 0.79095 1.21719 0.97842 1.31878 1.06420 0.92765 1.25850 1.02340 0.94480 0.96466 1.70061 1.37800 1.34265 1.14800 0.85405 0.79035 0.78117 0.78158 1.18769 1.20849 1.19786 1.16110 0.78584 0.84238 0.81291 1.90888 1.53985 1.18957 1.86614 1.44869 1.73121 1.17962 1.02191 1.21368 0.93013 0.95242 0.85030 0.87383 1.22361 1.04076 1.00266 0.93508 1.23326 1.01726 1.02501 0.92349 1.23166 0.89849 1.04239 1.01956 1.21582 0.87070 0.79333 0.74268 1.93123 1.94359 1.82426 1.45813 1.93235 1.95030 1.67532 1.61872 1.93143 1.56945 1.70344 1.95611 0.92998 0.94155 0.88223 0.90179 0.88661 0.95686 0.98623 0.92475 0.74320 0.83864 0.85590 0.88277 0.89177 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.24 71.98 0.74 -3.34 16 2 C 0.10 3.03 5.89 86.38 0.51 3.54 16 3 N -0.61 -26.31 2.46 -844.22 -2.07 -28.38 16 4 C 0.28 15.22 5.16 85.64 0.44 15.67 16 5 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 9 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 13 C 0.70 29.75 7.81 179.05 1.40 31.15 16 14 O -0.62 -33.27 14.49 -4.00 -0.06 -33.33 16 15 N -0.72 -21.48 4.86 -457.81 -2.22 -23.70 16 16 C 0.16 4.32 2.35 44.99 0.11 4.43 16 17 H 0.11 3.35 7.33 -2.39 -0.02 3.33 16 18 C -0.18 -3.10 5.09 -10.79 -0.05 -3.16 16 19 C -0.16 -2.27 9.34 30.61 0.29 -1.99 16 20 C -0.16 -2.25 10.18 30.61 0.31 -1.94 16 21 C 0.43 12.52 2.82 71.98 0.20 12.72 16 22 F -0.18 -4.53 14.50 44.97 0.65 -3.87 16 23 F -0.20 -7.48 15.67 44.97 0.70 -6.77 16 24 F -0.18 -4.70 16.95 44.97 0.76 -3.93 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 29 H 0.10 2.11 6.36 -2.39 -0.02 2.09 16 30 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 31 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 32 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 33 H 0.42 9.32 6.28 -92.70 -0.58 8.74 16 34 H 0.14 1.79 8.07 -2.39 -0.02 1.77 16 35 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.62 6.36 -2.38 -0.02 1.61 16 37 H 0.09 1.55 8.05 -2.39 -0.02 1.53 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -75.50 329.64 5.22 -70.28 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.51 Total: 12.05 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 4.64 Total: 27.02 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -4.01 Total: -108.47 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.06 Total: -33.33 kcal Atomic # 9 Polarization: -16.70 SS G_CDS: 2.12 Total: -14.58 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -75.50 5.22 -70.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344635027.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.599 kcal (2) G-P(sol) polarization free energy of solvation -75.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds