Wall clock time and date at job start Tue Mar 31 2020 07:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.47147 * 2 1 4 4 C 1.46501 * 119.99962 * 269.99870 * 3 2 1 5 5 C 1.50697 * 109.47453 * 270.00430 * 4 3 2 6 6 H 1.08001 * 119.99523 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00100 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99919 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99734 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47317 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.47062 * 120.00254 * 9 7 5 12 12 H 1.48497 * 109.47082 * 239.99819 * 9 7 5 13 13 C 1.34774 * 120.00036 * 90.00315 * 3 2 1 14 14 O 1.21587 * 119.99966 * 179.97438 * 13 3 2 15 15 N 1.34781 * 119.99861 * 359.97438 * 13 3 2 16 16 C 1.46502 * 119.99859 * 180.02562 * 15 13 3 17 17 H 1.09003 * 109.47175 * 34.99233 * 16 15 13 18 18 C 1.52989 * 109.47178 * 154.99961 * 16 15 13 19 19 C 1.53000 * 117.50008 * 248.61886 * 18 16 15 20 20 C 1.52997 * 60.00347 * 252.51154 * 19 18 16 21 21 C 1.52998 * 109.46660 * 275.00097 * 16 15 13 22 22 F 1.39905 * 109.47237 * 299.99792 * 21 16 15 23 23 F 1.39897 * 109.47770 * 60.00019 * 21 16 15 24 24 F 1.39906 * 109.46927 * 179.97438 * 21 16 15 25 25 H 1.08998 * 109.46711 * 300.00307 * 1 2 3 26 26 H 1.08993 * 109.46937 * 59.99957 * 1 2 3 27 27 H 1.08999 * 109.47061 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46711 * 239.99693 * 2 1 3 29 29 H 1.08993 * 109.46937 * 120.00042 * 2 1 3 30 30 H 1.09003 * 109.46932 * 30.00173 * 4 3 2 31 31 H 1.08993 * 109.47179 * 149.99637 * 4 3 2 32 32 H 0.97002 * 119.99592 * 179.97438 * 8 7 5 33 33 H 0.97002 * 119.99929 * 359.97438 * 15 13 3 34 34 H 1.09004 * 115.56709 * 34.30620 * 18 16 15 35 35 H 1.09002 * 117.49696 * 0.02562 * 19 18 16 36 36 H 1.09002 * 117.50343 * 145.02258 * 19 18 16 37 37 H 1.08999 * 117.49685 * 252.51237 * 20 19 18 38 38 H 1.08999 * 117.52022 * 107.47599 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7039 6 1 4.3429 1.2308 -1.0958 7 6 4.1491 2.3895 -2.8781 8 7 3.3488 3.1248 -3.6186 9 14 5.9135 2.0965 -3.4170 10 1 6.6011 1.2413 -2.4165 11 1 5.9214 1.4169 -4.7374 12 1 6.6204 3.3978 -3.5259 13 6 2.2431 2.0165 1.1672 14 8 2.6489 3.1627 1.1672 15 7 2.0180 1.3813 2.3344 16 6 2.2617 2.0721 3.6031 17 1 2.0097 3.1272 3.4966 18 6 1.3942 1.4485 4.6982 19 6 0.2546 2.2971 5.2656 20 6 1.5052 2.0349 6.1071 21 6 3.7377 1.9362 3.9824 22 9 4.0613 0.5819 4.1191 23 9 4.5311 2.5064 2.9811 24 9 3.9706 2.5963 5.1937 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5818 1.6877 -2.0284 31 1 2.0956 3.1410 -1.1385 32 1 3.6749 3.5153 -4.4446 33 1 1.6940 0.4670 2.3344 34 1 1.2272 0.3748 4.6117 35 1 0.1226 3.2995 4.8584 36 1 -0.6621 1.7818 5.5524 37 1 1.4113 1.3470 6.9473 38 1 2.1966 2.8646 6.2538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344635031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:05 Heat of formation + Delta-G solvation = -152.554268 kcal Electronic energy + Delta-G solvation = -25321.249169 eV Core-core repulsion = 21171.050735 eV Total energy + Delta-G solvation = -4150.198434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.83943 -47.42178 -47.20522 -39.74019 -37.85883 -35.38423 -34.16552 -32.65760 -30.12671 -29.12992 -26.67196 -24.08814 -23.05497 -22.67934 -22.52340 -21.19171 -19.39122 -18.30728 -18.13308 -17.70906 -17.09811 -16.48301 -16.35576 -15.23552 -14.63642 -14.44425 -14.31907 -14.15852 -14.02034 -13.75457 -13.71559 -13.56771 -13.39032 -13.30038 -13.15944 -12.63088 -12.24731 -12.04851 -11.76698 -11.71780 -11.58334 -11.18560 -10.91111 -10.78347 -10.74302 -10.53462 -10.49457 -10.09920 -9.60438 -9.33874 -9.02262 -8.39829 -7.65156 -6.00756 -4.04579 2.77885 2.92963 3.33011 3.40876 3.45931 3.52900 3.82353 3.93691 4.15568 4.30735 4.47416 4.51675 4.62215 4.74301 4.75074 4.93302 5.26749 5.29518 5.34029 5.41640 5.58182 5.62141 5.67720 5.81034 5.87358 5.96170 6.20104 6.44575 6.52303 6.76286 7.36252 7.53639 7.68187 7.97750 8.27515 8.61004 8.96604 9.26697 9.60867 11.07245 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019146 B = 0.005147 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.102872 B = 5439.157963 C = 6252.743757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.607 5.607 4 C 0.261 3.739 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.700 3.300 14 O -0.571 6.571 15 N -0.744 5.744 16 C 0.163 3.837 17 H 0.127 0.873 18 C -0.176 4.176 19 C -0.160 4.160 20 C -0.170 4.170 21 C 0.433 3.567 22 F -0.186 7.186 23 F -0.164 7.164 24 F -0.186 7.186 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.400 0.600 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 -6.694 17.527 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.341 5.341 4 C 0.142 3.858 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.401 3.599 14 O -0.447 6.447 15 N -0.403 5.403 16 C 0.053 3.947 17 H 0.145 0.855 18 C -0.195 4.195 19 C -0.197 4.197 20 C -0.208 4.208 21 C 0.377 3.623 22 F -0.168 7.168 23 F -0.145 7.145 24 F -0.168 7.168 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.236 0.764 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.941 -5.728 17.253 19.459 hybrid contribution 1.171 -0.743 -0.373 1.436 sum -5.770 -6.472 16.880 18.977 Atomic orbital electron populations 1.22244 0.96710 1.01374 1.02518 1.21352 0.93505 0.84413 1.02418 1.47552 1.67238 1.13204 1.06151 1.19220 0.96194 0.93468 0.76929 1.21506 0.97012 1.31690 1.06052 0.92442 1.24911 0.97778 0.94958 0.96408 1.69941 1.35548 1.33677 1.14359 0.86460 0.84793 0.78070 0.78212 1.19827 1.21030 1.20884 1.15929 0.78942 0.84849 0.80143 1.90927 1.51516 1.16644 1.85644 1.45206 1.74068 1.17773 1.03257 1.21218 0.87330 1.01409 0.84731 0.85499 1.22329 1.02875 1.00044 0.94262 1.23059 0.92832 1.01065 1.02777 1.23228 1.01023 1.03873 0.92632 1.21433 0.92644 0.73671 0.74550 1.93137 1.94339 1.33655 1.95672 1.93313 1.76474 1.84405 1.60301 1.93101 1.95657 1.81245 1.46776 0.93043 0.91855 0.92196 0.89621 0.92489 0.94846 0.93765 0.92834 0.76353 0.86196 0.88041 0.88063 0.87975 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.11 1.69 5.89 -4.04 -0.02 1.66 16 3 N -0.61 -12.77 2.46 -180.80 -0.44 -13.22 16 4 C 0.26 6.82 5.16 -5.19 -0.03 6.79 16 5 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.70 14.67 7.81 -86.92 -0.68 13.99 16 14 O -0.57 -14.50 14.49 5.29 0.08 -14.43 16 15 N -0.74 -11.44 4.86 -58.68 -0.29 -11.72 16 16 C 0.16 2.23 2.35 -67.94 -0.16 2.07 16 17 H 0.13 1.87 7.33 -51.93 -0.38 1.49 16 18 C -0.18 -1.69 5.09 -90.62 -0.46 -2.15 16 19 C -0.16 -1.29 10.18 -26.73 -0.27 -1.56 16 20 C -0.17 -1.41 9.34 -26.73 -0.25 -1.66 16 21 C 0.43 6.67 2.82 37.16 0.10 6.78 16 22 F -0.19 -2.78 16.95 2.25 0.04 -2.74 16 23 F -0.16 -3.27 15.67 2.25 0.04 -3.23 16 24 F -0.19 -2.56 14.50 2.25 0.03 -2.53 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 29 H 0.06 0.75 6.36 -51.93 -0.33 0.41 16 30 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.40 5.01 6.28 -40.82 -0.26 4.75 16 34 H 0.12 0.99 8.07 -51.93 -0.42 0.57 16 35 H 0.10 0.85 8.05 -51.93 -0.42 0.44 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.99 6.36 -51.93 -0.33 0.66 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -33.60 329.65 -6.69 -40.29 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.02 Total: 0.91 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -1.81 Total: 10.45 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.01 Total: -50.96 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.43 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 0.11 Total: -8.50 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.60 -6.69 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344635031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.269 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds