Wall clock time and date at job start Tue Mar 31 2020 07:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.46507 * 119.99848 * 60.00407 * 12 2 1 14 14 C 1.34773 * 120.00361 * 240.00449 * 12 2 1 15 15 O 1.21582 * 119.99907 * 359.97438 * 14 12 2 16 16 N 1.34778 * 120.00191 * 180.02562 * 14 12 2 17 17 C 1.46504 * 120.00059 * 179.97438 * 16 14 12 18 18 H 1.09003 * 109.46875 * 35.00304 * 17 16 14 19 19 C 1.52998 * 109.47024 * 154.99937 * 17 16 14 20 20 C 1.52995 * 117.50116 * 248.62815 * 19 17 16 21 21 C 1.52996 * 117.49872 * 180.02562 * 19 17 16 22 22 C 1.52995 * 109.47290 * 275.00488 * 17 16 14 23 23 F 1.39902 * 109.47486 * 59.99886 * 22 17 16 24 24 F 1.39895 * 109.47120 * 180.02562 * 22 17 16 25 25 F 1.39902 * 109.47129 * 299.99851 * 22 17 16 26 26 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 27 27 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 28 28 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 30 30 H 1.08993 * 109.47215 * 89.99564 * 13 12 2 31 31 H 1.09001 * 109.46606 * 210.00169 * 13 12 2 32 32 H 1.09004 * 109.46774 * 329.99892 * 13 12 2 33 33 H 0.96999 * 119.99830 * 0.02562 * 16 14 12 34 34 H 1.09004 * 115.54934 * 34.33066 * 19 17 16 35 35 H 1.08996 * 117.49854 * 359.97438 * 20 19 17 36 36 H 1.09002 * 117.50124 * 145.02197 * 20 19 17 37 37 H 1.09002 * 117.49811 * 214.98617 * 21 19 17 38 38 H 1.09003 * 117.50159 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0873 1.1283 1.8908 16 7 3.2429 -0.6712 3.1835 17 6 4.0855 0.0406 4.1477 18 1 3.7685 1.0818 4.2081 19 6 3.9507 -0.6142 5.5238 20 6 3.2423 0.1842 6.6199 21 6 4.7582 -0.0115 6.6751 22 6 5.5452 -0.0225 3.6935 23 9 5.6684 0.5763 2.4352 24 9 6.3499 0.6567 4.6145 25 9 5.9521 -1.3588 3.6159 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.9111 -0.5221 -4.4375 30 1 2.4158 -2.7377 0.9715 31 1 1.6239 -2.2853 2.5001 32 1 0.6905 -2.3002 0.9845 33 1 3.0092 -1.6001 3.3366 34 1 3.8114 -1.6953 5.5184 35 1 2.8726 1.1763 6.3606 36 1 2.6365 -0.3714 7.3357 37 1 5.1503 -0.6961 7.4273 38 1 5.3852 0.8518 6.4523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344657696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:51 Heat of formation + Delta-G solvation = -138.154444 kcal Electronic energy + Delta-G solvation = -25330.815360 eV Core-core repulsion = 21181.241349 eV Total energy + Delta-G solvation = -4149.574011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.89849 -47.47437 -47.27178 -39.88391 -37.97450 -35.69659 -34.27278 -32.66442 -30.55255 -28.52429 -26.32130 -25.10125 -24.10249 -22.71496 -21.65888 -21.21637 -19.22616 -18.37552 -18.18771 -17.78052 -17.33831 -16.65326 -16.34451 -15.47204 -15.02631 -14.61763 -14.32615 -14.16357 -14.08026 -13.81347 -13.78610 -13.47258 -13.44848 -13.20470 -13.01563 -12.67078 -12.34468 -12.22553 -11.88696 -11.83330 -11.71221 -11.54144 -11.16543 -10.82111 -10.67604 -10.56910 -10.13922 -9.69349 -9.53749 -9.27861 -9.15974 -8.61961 -7.73781 -6.12657 -4.13173 2.67882 2.81870 3.24283 3.38597 3.41170 3.46615 3.66814 3.87257 4.06675 4.23547 4.36697 4.41431 4.56449 4.68219 4.69004 4.86621 5.19036 5.23035 5.36746 5.49894 5.57320 5.75321 5.82292 5.90929 6.13549 6.23358 6.31323 6.40061 6.45805 6.76782 6.84235 7.32056 7.49731 7.64431 8.34678 8.51122 8.88611 9.06016 9.48232 11.00219 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.025003 B = 0.004654 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.615365 B = 6014.261192 C = 6339.898201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.245 3.755 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.263 1.263 11 H -0.294 1.294 12 N -0.598 5.598 13 C 0.088 3.912 14 C 0.701 3.299 15 O -0.583 6.583 16 N -0.741 5.741 17 C 0.163 3.837 18 H 0.128 0.872 19 C -0.177 4.177 20 C -0.161 4.161 21 C -0.169 4.169 22 C 0.434 3.566 23 F -0.165 7.165 24 F -0.185 7.185 25 F -0.185 7.185 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.266 0.734 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.402 0.598 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -1.605 20.730 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.143 3.857 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.187 1.187 11 H -0.221 1.221 12 N -0.332 5.332 13 C -0.056 4.056 14 C 0.403 3.597 15 O -0.460 6.460 16 N -0.400 5.400 17 C 0.053 3.947 18 H 0.145 0.855 19 C -0.196 4.196 20 C -0.198 4.198 21 C -0.207 4.207 22 C 0.378 3.622 23 F -0.146 7.146 24 F -0.167 7.167 25 F -0.166 7.166 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.240 0.760 34 H 0.139 0.861 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.804 -0.758 20.293 20.387 hybrid contribution -0.397 0.038 -0.400 0.565 sum 1.407 -0.720 19.893 19.955 Atomic orbital electron populations 1.22474 0.99164 1.01022 0.99294 1.19234 0.89683 0.95011 0.81815 0.91759 1.21170 1.32579 1.14306 0.88475 0.90375 1.24855 0.95721 0.96549 0.95601 1.69875 1.45179 1.40265 0.97959 0.86919 0.80337 0.83895 0.77559 1.20437 1.18747 1.22140 1.47108 1.51272 1.11689 1.23170 1.21537 1.02331 0.83080 0.98666 1.15899 0.79350 0.84988 0.79491 1.90900 1.62802 1.15556 1.76749 1.45124 1.55241 1.15896 1.23703 1.21242 0.84580 1.01089 0.87799 0.85470 1.22332 1.09042 1.00057 0.88171 1.23056 0.95243 1.01515 0.99937 1.23225 0.94588 1.03803 0.99060 1.21381 0.91169 0.73664 0.75998 1.93305 1.96542 1.83317 1.41440 1.93103 1.76649 1.80446 1.66498 1.93148 1.92274 1.35014 1.96187 0.94772 0.93073 0.92560 0.92452 0.92754 0.93390 0.90377 0.76044 0.86079 0.88074 0.88015 0.87899 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.65 37.16 0.32 -3.10 16 2 C 0.24 5.90 2.23 -69.08 -0.15 5.75 16 3 H 0.06 1.74 5.95 -51.93 -0.31 1.43 16 4 C -0.53 -14.64 8.95 -34.44 -0.31 -14.95 16 5 H 0.08 2.35 7.89 -52.49 -0.41 1.93 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 8 Si 0.88 21.88 24.37 -169.99 -4.14 17.74 16 9 H -0.28 -6.53 6.88 56.52 0.39 -6.14 16 10 H -0.26 -6.43 6.52 56.52 0.37 -6.07 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 N -0.60 -12.19 2.75 -181.00 -0.50 -12.69 16 13 C 0.09 1.38 9.44 59.85 0.57 1.95 16 14 C 0.70 13.96 7.81 -86.92 -0.68 13.28 16 15 O -0.58 -13.78 14.24 5.29 0.08 -13.71 16 16 N -0.74 -10.83 4.86 -58.68 -0.29 -11.11 16 17 C 0.16 2.10 2.35 -67.93 -0.16 1.94 16 18 H 0.13 1.74 7.33 -51.93 -0.38 1.36 16 19 C -0.18 -1.60 5.09 -90.63 -0.46 -2.06 16 20 C -0.16 -1.20 10.17 -26.76 -0.27 -1.47 16 21 C -0.17 -1.31 9.34 -26.76 -0.25 -1.56 16 22 C 0.43 6.39 2.82 37.16 0.10 6.50 16 23 F -0.16 -3.14 15.67 2.25 0.04 -3.11 16 24 F -0.19 -2.43 14.50 2.25 0.03 -2.40 16 25 F -0.18 -2.68 16.95 2.25 0.04 -2.64 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 1.14 3.28 -51.93 -0.17 0.97 16 28 H 0.06 1.10 6.66 -51.93 -0.35 0.75 16 29 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.55 6.36 -51.93 -0.33 0.22 16 32 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 33 H 0.40 4.75 6.28 -40.82 -0.26 4.50 16 34 H 0.12 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.11 0.93 6.36 -51.93 -0.33 0.59 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -33.29 313.65 -5.21 -38.50 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.58 Total: 2.69 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.39 Total: 8.33 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.01 Total: -50.15 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.08 Total: -13.71 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 0.11 Total: -8.15 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.74 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.29 -5.21 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344657696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.650 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds