Wall clock time and date at job start Tue Mar 31 2020 07:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.46507 * 119.99848 * 60.00407 * 12 2 1 14 14 C 1.34773 * 120.00361 * 240.00449 * 12 2 1 15 15 O 1.21582 * 119.99907 * 359.97438 * 14 12 2 16 16 N 1.34778 * 120.00191 * 180.02562 * 14 12 2 17 17 C 1.46504 * 120.00059 * 179.97438 * 16 14 12 18 18 H 1.09003 * 109.46875 * 35.00304 * 17 16 14 19 19 C 1.52998 * 109.47024 * 154.99937 * 17 16 14 20 20 C 1.52995 * 117.50116 * 248.62815 * 19 17 16 21 21 C 1.52996 * 117.49872 * 180.02562 * 19 17 16 22 22 C 1.52995 * 109.47290 * 275.00488 * 17 16 14 23 23 F 1.39902 * 109.47486 * 59.99886 * 22 17 16 24 24 F 1.39895 * 109.47120 * 180.02562 * 22 17 16 25 25 F 1.39902 * 109.47129 * 299.99851 * 22 17 16 26 26 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 27 27 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 28 28 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 30 30 H 1.08993 * 109.47215 * 89.99564 * 13 12 2 31 31 H 1.09001 * 109.46606 * 210.00169 * 13 12 2 32 32 H 1.09004 * 109.46774 * 329.99892 * 13 12 2 33 33 H 0.96999 * 119.99830 * 0.02562 * 16 14 12 34 34 H 1.09004 * 115.54934 * 34.33066 * 19 17 16 35 35 H 1.08996 * 117.49854 * 359.97438 * 20 19 17 36 36 H 1.09002 * 117.50124 * 145.02197 * 20 19 17 37 37 H 1.09002 * 117.49811 * 214.98617 * 21 19 17 38 38 H 1.09003 * 117.50159 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0873 1.1283 1.8908 16 7 3.2429 -0.6712 3.1835 17 6 4.0855 0.0406 4.1477 18 1 3.7685 1.0818 4.2081 19 6 3.9507 -0.6142 5.5238 20 6 3.2423 0.1842 6.6199 21 6 4.7582 -0.0115 6.6751 22 6 5.5452 -0.0225 3.6935 23 9 5.6684 0.5763 2.4352 24 9 6.3499 0.6567 4.6145 25 9 5.9521 -1.3588 3.6159 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.9111 -0.5221 -4.4375 30 1 2.4158 -2.7377 0.9715 31 1 1.6239 -2.2853 2.5001 32 1 0.6905 -2.3002 0.9845 33 1 3.0092 -1.6001 3.3366 34 1 3.8114 -1.6953 5.5184 35 1 2.8726 1.1763 6.3606 36 1 2.6365 -0.3714 7.3357 37 1 5.1503 -0.6961 7.4273 38 1 5.3852 0.8518 6.4523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344657696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:50 Heat of formation + Delta-G solvation = -161.147598 kcal Electronic energy + Delta-G solvation = -25331.812418 eV Core-core repulsion = 21181.241349 eV Total energy + Delta-G solvation = -4150.571069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.10924 -48.63575 -48.57984 -41.34803 -38.88440 -37.31742 -35.61443 -34.61212 -32.30182 -29.76385 -27.74151 -27.11791 -25.23979 -23.33498 -23.18496 -22.24347 -20.72711 -19.57446 -19.45735 -19.19183 -18.81952 -18.26817 -17.72073 -17.09684 -16.39078 -16.07404 -15.48140 -15.44961 -15.22277 -15.05005 -15.02423 -14.94237 -14.74828 -14.71288 -14.43485 -14.17225 -14.04353 -13.59664 -13.53686 -13.14876 -13.00541 -12.63624 -12.49934 -12.27312 -12.03476 -11.59101 -11.50760 -11.33454 -11.29728 -11.11030 -10.78413 -10.49665 -9.37031 -8.33715 -6.38307 1.27299 1.37476 1.40971 1.46466 1.65337 2.18687 2.29247 2.59332 2.83260 2.93965 3.02130 3.05428 3.31264 3.64389 3.86565 3.96315 4.11272 4.27864 4.37252 4.45633 4.57096 4.61248 4.73476 4.83567 4.94458 4.98704 5.05885 5.11183 5.21379 5.25129 5.27361 5.50925 5.67403 5.92750 6.31638 6.63769 6.97797 7.25299 7.53664 8.82642 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.025003 B = 0.004654 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.615365 B = 6014.261192 C = 6339.898201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.248 3.752 3 H 0.032 0.968 4 C -0.526 4.526 5 H 0.041 0.959 6 C 0.022 3.978 7 N -0.941 5.941 8 Si 0.943 3.057 9 H -0.250 1.250 10 H -0.261 1.261 11 H -0.298 1.298 12 N -0.608 5.608 13 C 0.083 3.917 14 C 0.697 3.303 15 O -0.626 6.626 16 N -0.722 5.722 17 C 0.166 3.834 18 H 0.117 0.883 19 C -0.185 4.185 20 C -0.148 4.148 21 C -0.166 4.166 22 C 0.429 3.571 23 F -0.196 7.196 24 F -0.175 7.175 25 F -0.183 7.183 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.268 0.732 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.418 0.582 34 H 0.141 0.859 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 -2.035 23.426 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.144 3.856 3 H 0.050 0.950 4 C -0.565 4.565 5 H 0.060 0.940 6 C -0.177 4.177 7 N -0.581 5.581 8 Si 0.770 3.230 9 H -0.176 1.176 10 H -0.186 1.186 11 H -0.225 1.225 12 N -0.342 5.342 13 C -0.059 4.059 14 C 0.398 3.602 15 O -0.507 6.507 16 N -0.380 5.380 17 C 0.057 3.943 18 H 0.135 0.865 19 C -0.204 4.204 20 C -0.185 4.185 21 C -0.204 4.204 22 C 0.373 3.627 23 F -0.178 7.178 24 F -0.157 7.157 25 F -0.164 7.164 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.258 0.742 34 H 0.159 0.841 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.263 -1.247 23.049 23.085 hybrid contribution 0.232 0.114 -1.165 1.194 sum 0.496 -1.133 21.884 21.919 Atomic orbital electron populations 1.22309 0.96279 1.02424 1.00026 1.18886 0.91791 0.93092 0.81866 0.95003 1.21387 1.31599 1.13115 0.90374 0.94032 1.25662 0.97252 0.99538 0.95247 1.70011 1.47178 1.42299 0.98606 0.85955 0.79915 0.80053 0.77105 1.17559 1.18571 1.22541 1.47059 1.51596 1.13319 1.22218 1.21778 1.02029 0.80198 1.01894 1.16090 0.79080 0.84615 0.80402 1.90867 1.64190 1.17677 1.77937 1.44875 1.54374 1.16457 1.22340 1.21408 0.82663 1.01044 0.89233 0.86499 1.22348 1.11105 1.00961 0.85975 1.23160 0.95237 1.01175 0.98925 1.23312 0.94938 1.03630 0.98489 1.21745 0.92490 0.73526 0.74974 1.93246 1.96781 1.83952 1.43807 1.93121 1.76540 1.80255 1.65780 1.93145 1.92388 1.34784 1.96127 0.92268 0.93958 0.90868 0.92304 0.93848 0.88496 0.89953 0.74173 0.84123 0.88622 0.85771 0.85919 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.13 8.65 71.99 0.62 -5.51 16 2 C 0.25 11.91 2.23 44.25 0.10 12.01 16 3 H 0.03 1.75 5.95 -2.39 -0.01 1.74 16 4 C -0.53 -29.90 8.95 25.60 0.23 -29.67 16 5 H 0.04 2.60 7.89 -2.91 -0.02 2.57 16 6 C 0.02 1.25 5.45 84.65 0.46 1.71 16 7 N -0.94 -58.48 13.96 21.45 0.30 -58.18 16 8 Si 0.94 45.28 24.37 68.60 1.67 46.95 16 9 H -0.25 -10.88 6.88 99.48 0.68 -10.20 16 10 H -0.26 -12.38 6.52 99.48 0.65 -11.73 16 11 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 12 N -0.61 -24.36 2.75 -844.83 -2.33 -26.69 16 13 C 0.08 2.46 9.44 127.77 1.21 3.67 16 14 C 0.70 27.44 7.81 179.06 1.40 28.84 16 15 O -0.63 -30.11 14.24 -3.98 -0.06 -30.17 16 16 N -0.72 -19.93 4.86 -457.82 -2.22 -22.15 16 17 C 0.17 4.05 2.35 44.99 0.11 4.16 16 18 H 0.12 3.15 7.33 -2.39 -0.02 3.13 16 19 C -0.19 -2.79 5.09 -10.80 -0.05 -2.84 16 20 C -0.15 -1.71 10.17 30.58 0.31 -1.40 16 21 C -0.17 -2.09 9.34 30.58 0.29 -1.81 16 22 C 0.43 12.42 2.82 71.98 0.20 12.62 16 23 F -0.20 -7.68 15.67 44.97 0.70 -6.98 16 24 F -0.18 -4.47 14.50 44.97 0.65 -3.82 16 25 F -0.18 -5.11 16.95 44.97 0.76 -4.35 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 27 H 0.04 1.77 3.28 -2.39 -0.01 1.76 16 28 H 0.07 2.67 6.66 -2.39 -0.02 2.65 16 29 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.87 6.36 -2.39 -0.02 1.86 16 32 H 0.08 2.37 6.43 -2.38 -0.02 2.36 16 33 H 0.42 8.67 6.28 -92.71 -0.58 8.09 16 34 H 0.14 1.60 8.07 -2.39 -0.02 1.58 16 35 H 0.10 1.24 8.05 -2.39 -0.02 1.22 16 36 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 1.48 6.36 -2.39 -0.02 1.47 16 Total: -1.00 -75.34 313.65 4.80 -70.54 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.45 Total: 13.08 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 4.87 Total: 21.78 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -4.25 Total: -107.02 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.06 Total: -30.17 kcal Atomic # 9 Polarization: -17.27 SS G_CDS: 2.12 Total: -15.15 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.67 Total: 46.95 kcal Total: -75.34 4.80 -70.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344657696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.609 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds