Wall clock time and date at job start Tue Mar 31 2020 07:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99680 * 2 1 4 4 C 1.52993 * 109.47608 * 270.00094 * 3 2 1 5 5 C 1.52996 * 109.47390 * 180.02562 * 4 3 2 6 6 F 1.39902 * 109.47359 * 60.00104 * 5 4 3 7 7 F 1.39898 * 109.47169 * 180.02562 * 5 4 3 8 8 F 1.39907 * 109.47068 * 299.99917 * 5 4 3 9 9 C 1.34774 * 120.00324 * 180.02562 * 2 1 3 10 10 O 1.21594 * 120.00067 * 184.63090 * 9 2 1 11 11 N 1.34770 * 119.99968 * 4.63266 * 9 2 1 12 12 C 1.46507 * 120.00043 * 174.93046 * 11 9 2 13 13 C 1.52999 * 109.47237 * 184.60424 * 12 11 9 14 14 C 1.50701 * 115.55068 * 306.48556 * 13 12 11 15 15 H 1.07991 * 119.99901 * 144.27648 * 14 13 12 16 16 C 1.37878 * 119.99596 * 324.28000 * 14 13 12 17 17 N 1.31514 * 120.00212 * 3.34965 * 16 14 13 18 18 Si 1.86805 * 119.99735 * 183.35737 * 16 14 13 19 19 H 1.48497 * 109.47192 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46917 * 119.99824 * 18 16 14 21 21 H 1.48496 * 109.46977 * 239.99464 * 18 16 14 22 22 C 1.52998 * 117.49741 * 160.81143 * 13 12 11 23 23 C 1.53001 * 117.49767 * 92.15362 * 13 12 11 24 24 H 1.08996 * 109.47109 * 264.29585 * 1 2 3 25 25 H 1.09001 * 109.47226 * 24.30130 * 1 2 3 26 26 H 1.09003 * 109.46871 * 144.30184 * 1 2 3 27 27 H 1.09003 * 109.46706 * 30.00503 * 3 2 1 28 28 H 1.09003 * 109.47142 * 149.99879 * 3 2 1 29 29 H 1.08998 * 109.46970 * 299.99982 * 4 3 2 30 30 H 1.09003 * 109.47044 * 59.99725 * 4 3 2 31 31 H 0.97004 * 120.00399 * 354.64779 * 11 9 2 32 32 H 1.09000 * 109.46561 * 304.60557 * 12 11 9 33 33 H 1.09001 * 109.47245 * 64.60051 * 12 11 9 34 34 H 0.96999 * 119.99812 * 185.00551 * 17 16 14 35 35 H 1.09000 * 117.50003 * 0.02562 * 22 13 12 36 36 H 1.09002 * 117.49629 * 145.02311 * 22 13 12 37 37 H 1.09000 * 117.49678 * 214.98023 * 23 13 12 38 38 H 1.09006 * 117.50081 * 359.97292 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7106 -1.4424 5 6 3.2179 3.0353 -1.4423 6 9 4.4404 2.8675 -0.7830 7 9 3.4505 3.4395 -2.7613 8 9 2.4622 4.0105 -0.7826 9 6 2.1389 -1.1671 -0.0005 10 8 3.3519 -1.1688 0.0845 11 7 1.4684 -2.3324 -0.0953 12 6 2.2046 -3.5941 -0.2078 13 6 1.2169 -4.7440 -0.4154 14 6 0.1135 -4.8454 0.6059 15 1 -0.8732 -5.1650 0.3049 16 6 0.3636 -4.5302 1.9247 17 7 1.5465 -4.0781 2.2797 18 14 -0.9775 -4.7454 3.2071 19 1 -2.2068 -5.2646 2.5554 20 1 -0.5221 -5.7068 4.2431 21 1 -1.2700 -3.4353 3.8420 22 6 1.7645 -6.0494 -0.9958 23 6 0.8848 -5.1386 -1.8558 24 1 -0.3633 -0.1021 1.0225 25 1 -0.3634 0.9366 -0.4229 26 1 -0.3633 -0.8346 -0.5997 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1385 0.5139 29 1 3.0416 0.9510 -1.9562 30 1 1.5000 1.8409 -1.9563 31 1 0.4984 -2.3361 -0.0849 32 1 2.8860 -3.5425 -1.0570 33 1 2.7745 -3.7649 0.7055 34 1 1.7461 -3.9252 3.2166 35 1 2.8285 -6.0891 -1.2294 36 1 1.3264 -6.9816 -0.6392 37 1 -0.1318 -5.4720 -2.0646 38 1 1.3695 -4.5787 -2.6557 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346299065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:08 Heat of formation + Delta-G solvation = -156.820943 kcal Electronic energy + Delta-G solvation = -24505.327968 eV Core-core repulsion = 20354.944517 eV Total energy + Delta-G solvation = -4150.383451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.16765 -47.68469 -47.62089 -39.52870 -36.93766 -35.45910 -33.39972 -32.29405 -31.77734 -26.96827 -26.42350 -25.56291 -24.29736 -22.29841 -21.25720 -19.31620 -19.26891 -18.62243 -18.36670 -17.61457 -17.42494 -16.28024 -15.56251 -15.11354 -14.84636 -14.73572 -14.52726 -14.10923 -14.01833 -13.90659 -13.79434 -13.75539 -13.44138 -13.26022 -12.79823 -12.59727 -12.43283 -12.18652 -11.85865 -11.76126 -11.41081 -11.20495 -11.14066 -10.75734 -10.54103 -10.28587 -9.75418 -9.34403 -8.98841 -8.89090 -8.48257 -8.31773 -7.72836 -6.03338 -4.23375 2.61425 3.15853 3.18279 3.28024 3.30072 3.80537 3.86663 3.99664 4.09662 4.26078 4.65955 4.86579 4.91166 5.06119 5.24660 5.25282 5.44816 5.56387 5.68953 5.86609 5.90647 6.01139 6.28527 6.52780 6.59709 6.68561 6.73114 6.87757 7.04850 7.23731 7.46956 7.59153 7.72496 7.96013 8.28546 8.71797 8.88929 9.39646 9.41143 10.85993 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.004033 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.657513 B = 6940.677032 C = 7545.294626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.640 5.640 3 C 0.137 3.863 4 C -0.185 4.185 5 C 0.457 3.543 6 F -0.180 7.180 7 F -0.187 7.187 8 F -0.186 7.186 9 C 0.699 3.301 10 O -0.602 6.602 11 N -0.695 5.695 12 C 0.182 3.818 13 C 0.035 3.965 14 C -0.497 4.497 15 H 0.061 0.939 16 C 0.074 3.926 17 N -0.864 5.864 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.198 4.198 23 C -0.212 4.212 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.397 0.603 32 H 0.019 0.981 33 H 0.110 0.890 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 12.224 -5.933 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.379 5.379 3 C 0.012 3.988 4 C -0.225 4.225 5 C 0.402 3.598 6 F -0.161 7.161 7 F -0.169 7.169 8 F -0.168 7.168 9 C 0.400 3.600 10 O -0.482 6.482 11 N -0.347 5.347 12 C 0.059 3.941 13 C 0.035 3.965 14 C -0.535 4.535 15 H 0.079 0.921 16 C -0.131 4.131 17 N -0.500 5.500 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.236 4.236 23 C -0.249 4.249 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.233 0.767 32 H 0.037 0.963 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.815 12.304 -5.707 13.588 hybrid contribution -1.120 -0.029 0.640 1.290 sum -1.935 12.275 -5.068 13.420 Atomic orbital electron populations 1.21697 0.79917 1.02541 1.02069 1.46869 1.06076 1.04475 1.80478 1.21036 0.99561 0.85500 0.92732 1.23385 1.02618 0.92879 1.03646 1.20522 0.78462 0.87542 0.73263 1.93213 1.46241 1.95566 1.81096 1.93180 1.94924 1.92160 1.36600 1.93172 1.75949 1.66411 1.81274 1.15943 0.85306 0.80443 0.78334 1.90847 1.12164 1.86259 1.58944 1.44966 1.10044 1.04467 1.75199 1.20933 0.92555 0.79776 1.00868 1.19250 0.96254 0.91261 0.89766 1.20539 0.95276 1.45915 0.91750 0.92076 1.25013 0.95716 0.93808 0.98522 1.69922 1.20578 1.42653 1.16834 0.86546 0.82028 0.77869 0.81653 1.19741 1.20853 1.21002 1.22937 0.96776 0.96997 1.06935 1.22949 0.99255 1.06513 0.96192 0.92611 0.91352 0.91119 0.89909 0.88523 0.86780 0.87450 0.76749 0.96303 0.87257 0.92734 0.91434 0.90209 0.90685 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.12 59.84 0.61 1.60 16 2 N -0.64 -9.96 2.87 -187.35 -0.54 -10.50 16 3 C 0.14 1.78 5.17 -4.04 -0.02 1.76 16 4 C -0.19 -2.05 5.58 -26.74 -0.15 -2.20 16 5 C 0.46 5.14 3.16 37.16 0.12 5.26 16 6 F -0.18 -2.33 16.80 2.25 0.04 -2.30 16 7 F -0.19 -2.17 17.32 2.25 0.04 -2.13 16 8 F -0.19 -2.05 16.80 2.25 0.04 -2.01 16 9 C 0.70 14.36 8.27 -86.93 -0.72 13.64 16 10 O -0.60 -14.48 15.91 5.28 0.08 -14.39 16 11 N -0.70 -14.70 4.95 -65.22 -0.32 -15.03 16 12 C 0.18 4.27 4.61 -4.04 -0.02 4.26 16 13 C 0.04 0.82 2.08 -155.66 -0.32 0.49 16 14 C -0.50 -12.26 8.26 -34.44 -0.28 -12.54 16 15 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 16 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 17 N -0.86 -22.61 10.17 55.43 0.56 -22.04 16 18 Si 0.89 19.54 29.54 -169.99 -5.02 14.52 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.20 -4.24 9.96 -26.70 -0.27 -4.51 16 23 C -0.21 -4.31 9.92 -26.69 -0.26 -4.57 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 26 H 0.07 0.87 6.57 -51.93 -0.34 0.53 16 27 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 28 H 0.10 1.48 7.02 -51.93 -0.36 1.11 16 29 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.40 7.98 5.73 -40.82 -0.23 7.75 16 32 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.11 2.94 5.97 -51.93 -0.31 2.63 16 34 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 330.36 15.07 4.98 4.98 Total: -1.00 -28.49 330.36 -6.55 -35.04 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.99 Total: 8.92 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -1.42 Total: 4.93 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.30 Total: -47.57 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.39 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.11 Total: -6.44 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.49 -6.55 -35.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346299065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.781 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds