Wall clock time and date at job start Tue Mar 31 2020 07:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99680 * 2 1 4 4 C 1.52993 * 109.47608 * 270.00094 * 3 2 1 5 5 C 1.52996 * 109.47390 * 180.02562 * 4 3 2 6 6 F 1.39902 * 109.47359 * 60.00104 * 5 4 3 7 7 F 1.39898 * 109.47169 * 180.02562 * 5 4 3 8 8 F 1.39907 * 109.47068 * 299.99917 * 5 4 3 9 9 C 1.34774 * 120.00324 * 180.02562 * 2 1 3 10 10 O 1.21594 * 120.00067 * 184.63090 * 9 2 1 11 11 N 1.34770 * 119.99968 * 4.63266 * 9 2 1 12 12 C 1.46507 * 120.00043 * 174.93046 * 11 9 2 13 13 C 1.52999 * 109.47237 * 184.60424 * 12 11 9 14 14 C 1.50701 * 115.55068 * 306.48556 * 13 12 11 15 15 H 1.07991 * 119.99901 * 144.27648 * 14 13 12 16 16 C 1.37878 * 119.99596 * 324.28000 * 14 13 12 17 17 N 1.31514 * 120.00212 * 3.34965 * 16 14 13 18 18 Si 1.86805 * 119.99735 * 183.35737 * 16 14 13 19 19 H 1.48497 * 109.47192 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46917 * 119.99824 * 18 16 14 21 21 H 1.48496 * 109.46977 * 239.99464 * 18 16 14 22 22 C 1.52998 * 117.49741 * 160.81143 * 13 12 11 23 23 C 1.53001 * 117.49767 * 92.15362 * 13 12 11 24 24 H 1.08996 * 109.47109 * 264.29585 * 1 2 3 25 25 H 1.09001 * 109.47226 * 24.30130 * 1 2 3 26 26 H 1.09003 * 109.46871 * 144.30184 * 1 2 3 27 27 H 1.09003 * 109.46706 * 30.00503 * 3 2 1 28 28 H 1.09003 * 109.47142 * 149.99879 * 3 2 1 29 29 H 1.08998 * 109.46970 * 299.99982 * 4 3 2 30 30 H 1.09003 * 109.47044 * 59.99725 * 4 3 2 31 31 H 0.97004 * 120.00399 * 354.64779 * 11 9 2 32 32 H 1.09000 * 109.46561 * 304.60557 * 12 11 9 33 33 H 1.09001 * 109.47245 * 64.60051 * 12 11 9 34 34 H 0.96999 * 119.99812 * 185.00551 * 17 16 14 35 35 H 1.09000 * 117.50003 * 0.02562 * 22 13 12 36 36 H 1.09002 * 117.49629 * 145.02311 * 22 13 12 37 37 H 1.09000 * 117.49678 * 214.98023 * 23 13 12 38 38 H 1.09006 * 117.50081 * 359.97292 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7106 -1.4424 5 6 3.2179 3.0353 -1.4423 6 9 4.4404 2.8675 -0.7830 7 9 3.4505 3.4395 -2.7613 8 9 2.4622 4.0105 -0.7826 9 6 2.1389 -1.1671 -0.0005 10 8 3.3519 -1.1688 0.0845 11 7 1.4684 -2.3324 -0.0953 12 6 2.2046 -3.5941 -0.2078 13 6 1.2169 -4.7440 -0.4154 14 6 0.1135 -4.8454 0.6059 15 1 -0.8732 -5.1650 0.3049 16 6 0.3636 -4.5302 1.9247 17 7 1.5465 -4.0781 2.2797 18 14 -0.9775 -4.7454 3.2071 19 1 -2.2068 -5.2646 2.5554 20 1 -0.5221 -5.7068 4.2431 21 1 -1.2700 -3.4353 3.8420 22 6 1.7645 -6.0494 -0.9958 23 6 0.8848 -5.1386 -1.8558 24 1 -0.3633 -0.1021 1.0225 25 1 -0.3634 0.9366 -0.4229 26 1 -0.3633 -0.8346 -0.5997 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1385 0.5139 29 1 3.0416 0.9510 -1.9562 30 1 1.5000 1.8409 -1.9563 31 1 0.4984 -2.3361 -0.0849 32 1 2.8860 -3.5425 -1.0570 33 1 2.7745 -3.7649 0.7055 34 1 1.7461 -3.9252 3.2166 35 1 2.8285 -6.0891 -1.2294 36 1 1.3264 -6.9816 -0.6392 37 1 -0.1318 -5.4720 -2.0646 38 1 1.3695 -4.5787 -2.6557 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346299065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:08 Heat of formation + Delta-G solvation = -172.670365 kcal Electronic energy + Delta-G solvation = -24506.015251 eV Core-core repulsion = 20354.944517 eV Total energy + Delta-G solvation = -4151.070734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.09486 -48.59985 -48.56764 -41.04150 -38.62768 -36.84676 -34.97493 -34.13030 -33.00751 -28.08797 -27.96423 -27.36756 -25.62076 -23.34771 -22.92419 -21.11180 -20.68971 -19.58622 -19.46075 -18.95818 -18.43597 -17.97799 -17.04562 -16.75852 -16.31429 -15.88494 -15.64641 -15.46620 -15.11586 -15.01419 -14.99874 -14.75104 -14.70835 -14.54938 -14.28378 -14.12340 -13.53213 -13.40470 -13.33200 -13.12163 -12.93210 -12.80618 -12.55456 -12.24681 -12.21470 -12.01414 -11.52164 -11.06394 -10.81537 -10.66618 -10.14680 -9.90644 -9.33624 -7.92071 -6.17802 1.42576 1.49144 1.57555 1.58652 1.99119 2.33042 2.44044 2.88164 3.02209 3.07472 3.09365 3.38903 3.68753 3.92200 3.94149 4.29757 4.32870 4.34974 4.55543 4.60318 4.65853 4.79320 4.82948 4.89091 4.94192 4.98566 5.14150 5.31085 5.55549 5.60799 5.63920 5.96083 6.01088 6.09568 6.40609 6.84454 7.28445 7.47604 7.81155 8.94510 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.004033 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.657513 B = 6940.677032 C = 7545.294626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.633 5.633 3 C 0.133 3.867 4 C -0.174 4.174 5 C 0.463 3.537 6 F -0.193 7.193 7 F -0.187 7.187 8 F -0.181 7.181 9 C 0.692 3.308 10 O -0.646 6.646 11 N -0.694 5.694 12 C 0.195 3.805 13 C 0.007 3.993 14 C -0.501 4.501 15 H 0.060 0.940 16 C 0.036 3.964 17 N -0.890 5.890 18 Si 0.948 3.052 19 H -0.265 1.265 20 H -0.290 1.290 21 H -0.283 1.283 22 C -0.200 4.200 23 C -0.184 4.184 24 H 0.052 0.948 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.138 0.862 31 H 0.402 0.598 32 H 0.013 0.987 33 H 0.071 0.929 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 13.213 -6.799 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.370 5.370 3 C 0.009 3.991 4 C -0.214 4.214 5 C 0.408 3.592 6 F -0.175 7.175 7 F -0.169 7.169 8 F -0.163 7.163 9 C 0.393 3.607 10 O -0.529 6.529 11 N -0.346 5.346 12 C 0.070 3.930 13 C 0.007 3.993 14 C -0.539 4.539 15 H 0.078 0.922 16 C -0.165 4.165 17 N -0.527 5.527 18 Si 0.775 3.225 19 H -0.189 1.189 20 H -0.217 1.217 21 H -0.209 1.209 22 C -0.239 4.239 23 C -0.222 4.222 24 H 0.071 0.929 25 H 0.131 0.869 26 H 0.087 0.913 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.156 0.844 31 H 0.238 0.762 32 H 0.032 0.968 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.861 13.325 -6.589 15.138 hybrid contribution -0.496 -0.310 0.883 1.059 sum -3.357 13.015 -5.706 14.602 Atomic orbital electron populations 1.21952 0.77442 1.04924 1.02334 1.46878 1.07576 1.03573 1.78989 1.21202 0.98717 0.85023 0.94207 1.23259 1.03778 0.92128 1.02242 1.20466 0.77977 0.87665 0.73093 1.93194 1.47220 1.95649 1.81397 1.93181 1.94916 1.92158 1.36617 1.93183 1.75678 1.66236 1.81168 1.16183 0.84931 0.81525 0.78023 1.90811 1.14214 1.87112 1.60730 1.44807 1.10064 1.04167 1.75538 1.20558 0.92583 0.81194 0.98636 1.19292 0.96577 0.91933 0.91528 1.20715 0.95508 1.45384 0.92258 0.92205 1.25589 0.97134 0.93738 1.00083 1.70117 1.22174 1.43924 1.16464 0.85658 0.80065 0.77436 0.79335 1.18944 1.21691 1.20878 1.22964 0.97550 0.96338 1.07060 1.22934 0.99605 1.04827 0.94791 0.92908 0.86948 0.91295 0.86605 0.91380 0.88442 0.84358 0.76172 0.96838 0.91087 0.93482 0.90773 0.90360 0.89644 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.64 10.12 127.77 1.29 2.93 16 2 N -0.63 -18.82 2.87 -864.92 -2.49 -21.31 16 3 C 0.13 3.25 5.17 86.38 0.45 3.69 16 4 C -0.17 -3.51 5.58 30.59 0.17 -3.34 16 5 C 0.46 9.64 3.16 71.98 0.23 9.87 16 6 F -0.19 -4.93 16.80 44.97 0.76 -4.17 16 7 F -0.19 -4.02 17.32 44.97 0.78 -3.24 16 8 F -0.18 -3.53 16.80 44.97 0.76 -2.77 16 9 C 0.69 28.63 8.27 179.06 1.48 30.11 16 10 O -0.65 -31.99 15.91 -4.01 -0.06 -32.06 16 11 N -0.69 -29.45 4.95 -478.53 -2.37 -31.82 16 12 C 0.20 9.31 4.61 86.38 0.40 9.71 16 13 C 0.01 0.34 2.08 -52.93 -0.11 0.23 16 14 C -0.50 -24.38 8.26 25.60 0.21 -24.17 16 15 H 0.06 2.88 7.81 -2.92 -0.02 2.85 16 16 C 0.04 1.80 5.29 84.65 0.45 2.24 16 17 N -0.89 -47.43 10.17 21.45 0.22 -47.22 16 18 Si 0.95 39.89 29.54 68.60 2.03 41.92 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 22 C -0.20 -8.42 9.96 30.62 0.30 -8.12 16 23 C -0.18 -7.14 9.92 30.62 0.30 -6.83 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.11 1.46 8.03 -2.39 -0.02 1.44 16 26 H 0.07 1.54 6.57 -2.39 -0.02 1.52 16 27 H 0.12 2.07 7.73 -2.39 -0.02 2.06 16 28 H 0.07 2.09 7.02 -2.39 -0.02 2.07 16 29 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.40 15.95 5.73 -92.71 -0.53 15.42 16 32 H 0.01 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.07 3.98 5.97 -2.39 -0.01 3.96 16 34 H 0.26 13.45 8.32 -92.71 -0.77 12.68 16 35 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.08 3.27 8.14 -2.39 -0.02 3.26 16 37 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.08 2.95 8.14 -2.38 -0.02 2.94 16 Total: -1.00 -62.24 330.36 5.34 -56.89 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.56 Total: 27.46 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.17 Total: 16.32 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -4.64 Total: -100.35 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.06 Total: -32.06 kcal Atomic # 9 Polarization: -12.47 SS G_CDS: 2.29 Total: -10.18 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -62.24 5.34 -56.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346299065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.779 kcal (2) G-P(sol) polarization free energy of solvation -62.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds