Wall clock time and date at job start Tue Mar 31 2020 07:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47118 * 2 1 4 4 C 1.37099 * 119.99947 * 88.90650 * 3 2 1 5 5 H 1.07997 * 120.00107 * 162.85542 * 4 3 2 6 6 C 1.38947 * 119.99830 * 342.58223 * 4 3 2 7 7 N 1.31412 * 120.00143 * 2.30231 * 6 4 3 8 8 Si 1.86806 * 119.99965 * 182.30473 * 6 4 3 9 9 H 1.48489 * 109.47141 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47337 * 119.99953 * 8 6 4 11 11 H 1.48503 * 109.47112 * 239.99657 * 8 6 4 12 12 C 1.34774 * 120.00148 * 268.90535 * 3 2 1 13 13 O 1.21293 * 119.99953 * 184.71623 * 12 3 2 14 14 C 1.50701 * 120.00082 * 4.72456 * 12 3 2 15 15 H 1.08995 * 110.64409 * 35.58482 * 14 12 3 16 16 C 1.54602 * 110.72102 * 272.43536 * 14 12 3 17 17 C 1.53990 * 105.13731 * 219.68568 * 16 14 12 18 18 N 1.47903 * 107.06142 * 358.77443 * 17 16 14 19 19 C 1.46898 * 111.00099 * 145.84575 * 18 17 16 20 20 C 1.53006 * 109.47140 * 69.87426 * 19 18 17 21 21 F 1.39902 * 109.46908 * 59.99644 * 20 19 18 22 22 F 1.39900 * 109.46907 * 179.97438 * 20 19 18 23 23 F 1.39897 * 109.46969 * 300.00275 * 20 19 18 24 24 C 1.48530 * 105.81908 * 25.33118 * 18 17 16 25 25 H 1.09004 * 109.47378 * 59.99354 * 1 2 3 26 26 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46760 * 299.99892 * 1 2 3 28 28 H 1.09003 * 109.46760 * 240.00108 * 2 1 3 29 29 H 1.08994 * 109.46976 * 120.00320 * 2 1 3 30 30 H 0.97005 * 119.99902 * 180.02562 * 7 6 4 31 31 H 1.08998 * 110.30473 * 338.59807 * 16 14 12 32 32 H 1.08998 * 110.30972 * 100.66524 * 16 14 12 33 33 H 1.09001 * 109.91750 * 118.13019 * 17 16 14 34 34 H 1.09004 * 109.91672 * 239.22500 * 17 16 14 35 35 H 1.09002 * 109.46749 * 189.86832 * 19 18 17 36 36 H 1.08995 * 109.47249 * 309.87014 * 19 18 17 37 37 H 1.09001 * 110.66911 * 202.36409 * 24 18 17 38 38 H 1.09001 * 110.66953 * 79.22879 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2255 2.0351 1.1871 5 1 2.8330 2.9276 1.2132 6 6 1.6491 1.5526 2.3557 7 7 0.9429 0.4446 2.3313 8 14 1.8781 2.4790 3.9616 9 1 2.7088 3.6863 3.7225 10 1 0.5520 2.8870 4.4912 11 1 2.5557 1.5997 4.9481 12 6 2.2640 2.0092 -1.1669 13 8 2.7487 3.1210 -1.1670 14 6 1.9363 1.3299 -2.4717 15 1 1.0300 0.7318 -2.3765 16 6 3.1206 0.4570 -2.9465 17 6 3.1868 0.6639 -4.4710 18 7 2.0813 1.5772 -4.8334 19 6 2.4650 2.4512 -5.9500 20 6 2.5759 1.6225 -7.2315 21 9 1.3414 1.0257 -7.5092 22 9 2.9407 2.4550 -8.2950 23 9 3.5463 0.6292 -7.0619 24 6 1.7941 2.3704 -3.6109 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.5402 0.1080 3.1471 31 1 4.0472 0.7899 -2.4790 32 1 2.9352 -0.5915 -2.7132 33 1 4.1426 1.1113 -4.7439 34 1 3.0652 -0.2917 -4.9811 35 1 1.7087 3.2250 -6.0821 36 1 3.4267 2.9162 -5.7336 37 1 0.7810 2.7712 -3.6415 38 1 2.5228 3.1723 -3.4926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348168530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:47 Heat of formation + Delta-G solvation = -165.563550 kcal Electronic energy + Delta-G solvation = -24855.167559 eV Core-core repulsion = 20704.405000 eV Total energy + Delta-G solvation = -4150.762559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.13351 -47.70051 -47.55812 -39.60034 -37.74211 -35.14664 -32.90916 -31.56449 -29.46650 -28.81773 -28.13991 -25.01775 -23.27095 -22.39240 -21.48764 -21.01429 -18.70727 -18.60970 -18.50359 -17.28944 -16.92785 -16.42815 -15.77315 -15.22345 -14.57855 -14.51477 -14.19397 -14.09180 -13.94605 -13.82895 -13.80710 -13.71343 -13.63832 -13.06577 -12.80989 -12.76506 -12.40942 -11.89679 -11.62680 -11.59135 -11.32963 -11.14115 -11.06604 -10.80871 -10.62564 -10.43731 -10.30797 -10.06827 -9.94903 -8.84926 -8.66841 -8.40013 -7.68501 -6.23879 -3.89420 2.63780 3.11905 3.23345 3.29695 3.49652 3.74813 3.79465 3.97037 4.09634 4.38239 4.72915 4.76916 4.97483 5.02264 5.10427 5.22109 5.28902 5.55005 5.69005 5.78807 5.90624 6.01995 6.09614 6.21027 6.33139 6.35262 6.65908 6.70834 6.75289 6.78396 6.88521 7.37026 7.52594 7.85829 8.09178 8.50276 9.15012 9.41666 9.94282 10.65721 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.038114 B = 0.003564 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.455391 B = 7855.365384 C = 8133.187171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.126 3.874 3 N -0.441 5.441 4 C -0.295 4.295 5 H 0.101 0.899 6 C 0.023 3.977 7 N -0.878 5.878 8 Si 0.929 3.071 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.453 3.547 13 O -0.596 6.596 14 C -0.103 4.103 15 H 0.097 0.903 16 C -0.117 4.117 17 C 0.032 3.968 18 N -0.514 5.514 19 C 0.000 4.000 20 C 0.458 3.542 21 F -0.174 7.174 22 F -0.187 7.187 23 F -0.184 7.184 24 C 0.059 3.941 25 H 0.015 0.985 26 H 0.033 0.967 27 H 0.099 0.901 28 H 0.028 0.972 29 H 0.107 0.893 30 H 0.264 0.736 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.325 -1.581 -13.784 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.002 3.998 3 N -0.159 5.159 4 C -0.423 4.423 5 H 0.118 0.882 6 C -0.177 4.177 7 N -0.520 5.520 8 Si 0.756 3.244 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.241 3.759 13 O -0.482 6.482 14 C -0.125 4.125 15 H 0.116 0.884 16 C -0.155 4.155 17 C -0.096 4.096 18 N -0.239 5.239 19 C -0.130 4.130 20 C 0.403 3.597 21 F -0.156 7.156 22 F -0.169 7.169 23 F -0.165 7.165 24 C -0.068 4.068 25 H 0.034 0.966 26 H 0.052 0.948 27 H 0.118 0.882 28 H 0.047 0.953 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.012 -1.471 -13.797 13.912 hybrid contribution 0.647 0.488 0.767 1.116 sum 1.659 -0.983 -13.030 13.172 Atomic orbital electron populations 1.22348 0.96687 0.99680 1.01801 1.21516 0.94736 0.83170 1.00334 1.43788 1.55852 1.11687 1.04557 1.19815 1.28782 1.09827 0.83871 0.88160 1.25315 0.95858 0.96778 0.99796 1.70130 1.33760 1.20377 1.27763 0.85802 0.78096 0.79430 0.81039 1.19412 1.20707 1.20817 1.19703 0.85052 0.86583 0.84605 1.90495 1.49583 1.20987 1.87093 1.22094 0.99801 0.96847 0.93754 0.88438 1.22368 0.98802 1.00546 0.93814 1.23107 0.92258 0.97723 0.96467 1.64752 1.37069 1.16601 1.05453 1.23387 1.04846 0.95446 0.89325 1.20490 0.73821 0.79072 0.86286 1.93199 1.43011 1.84815 1.94552 1.93175 1.91827 1.71834 1.60059 1.93171 1.64054 1.63891 1.95407 1.23073 1.02430 0.95369 0.85925 0.96580 0.94773 0.88233 0.95337 0.87547 0.92485 0.90890 0.90392 0.93136 0.89669 0.86246 0.89914 0.89486 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.39 37.16 0.35 -2.73 16 2 C 0.13 2.74 4.96 -4.04 -0.02 2.72 16 3 N -0.44 -10.85 2.62 -114.81 -0.30 -11.16 16 4 C -0.30 -7.92 9.44 -14.93 -0.14 -8.06 16 5 H 0.10 2.85 7.27 -52.49 -0.38 2.47 16 6 C 0.02 0.59 5.38 -17.47 -0.09 0.49 16 7 N -0.88 -21.70 7.23 55.50 0.40 -21.30 16 8 Si 0.93 20.19 29.55 -169.99 -5.02 15.17 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.45 10.55 6.71 -10.99 -0.07 10.48 16 13 O -0.60 -15.76 15.41 5.55 0.09 -15.68 16 14 C -0.10 -1.84 2.44 -89.91 -0.22 -2.06 16 15 H 0.10 1.73 5.99 -51.93 -0.31 1.42 16 16 C -0.12 -1.79 6.00 -25.37 -0.15 -1.95 16 17 C 0.03 0.43 5.10 -2.76 -0.01 0.41 16 18 N -0.51 -6.96 5.19 -230.45 -1.20 -8.15 16 19 C 0.00 0.01 4.88 -3.82 -0.02 -0.01 16 20 C 0.46 5.19 3.27 37.16 0.12 5.31 16 21 F -0.17 -2.20 17.24 2.25 0.04 -2.16 16 22 F -0.19 -2.06 17.32 2.25 0.04 -2.03 16 23 F -0.18 -2.21 14.72 2.25 0.03 -2.17 16 24 C 0.06 0.93 5.81 -1.90 -0.01 0.91 16 25 H 0.02 0.31 7.02 -51.93 -0.36 -0.06 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 2.37 5.77 -51.93 -0.30 2.07 16 28 H 0.03 0.54 5.63 -51.93 -0.29 0.25 16 29 H 0.11 2.54 6.12 -51.93 -0.32 2.22 16 30 H 0.26 6.23 8.31 -40.82 -0.34 5.89 16 31 H 0.07 1.21 7.84 -51.93 -0.41 0.80 16 32 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 33 H 0.05 0.63 7.30 -51.93 -0.38 0.26 16 34 H 0.09 1.07 7.51 -51.93 -0.39 0.68 16 35 H 0.12 1.11 8.11 -51.93 -0.42 0.69 16 36 H 0.08 0.83 7.82 -51.93 -0.41 0.43 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.07 1.20 7.11 -51.93 -0.37 0.83 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -28.17 309.45 -6.24 -34.41 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.70 Total: 2.89 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -0.27 Total: 5.52 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -1.10 Total: -40.61 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.09 Total: -15.68 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.11 Total: -6.36 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.17 -6.24 -34.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348168530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.158 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds