Wall clock time and date at job start Tue Mar 31 2020 07:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47118 * 2 1 4 4 C 1.37099 * 119.99947 * 88.90650 * 3 2 1 5 5 H 1.07997 * 120.00107 * 162.85542 * 4 3 2 6 6 C 1.38947 * 119.99830 * 342.58223 * 4 3 2 7 7 N 1.31412 * 120.00143 * 2.30231 * 6 4 3 8 8 Si 1.86806 * 119.99965 * 182.30473 * 6 4 3 9 9 H 1.48489 * 109.47141 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47337 * 119.99953 * 8 6 4 11 11 H 1.48503 * 109.47112 * 239.99657 * 8 6 4 12 12 C 1.34774 * 120.00148 * 268.90535 * 3 2 1 13 13 O 1.21293 * 119.99953 * 184.71623 * 12 3 2 14 14 C 1.50701 * 120.00082 * 4.72456 * 12 3 2 15 15 H 1.08995 * 110.64409 * 35.58482 * 14 12 3 16 16 C 1.54602 * 110.72102 * 272.43536 * 14 12 3 17 17 C 1.53990 * 105.13731 * 219.68568 * 16 14 12 18 18 N 1.47903 * 107.06142 * 358.77443 * 17 16 14 19 19 C 1.46898 * 111.00099 * 145.84575 * 18 17 16 20 20 C 1.53006 * 109.47140 * 69.87426 * 19 18 17 21 21 F 1.39902 * 109.46908 * 59.99644 * 20 19 18 22 22 F 1.39900 * 109.46907 * 179.97438 * 20 19 18 23 23 F 1.39897 * 109.46969 * 300.00275 * 20 19 18 24 24 C 1.48530 * 105.81908 * 25.33118 * 18 17 16 25 25 H 1.09004 * 109.47378 * 59.99354 * 1 2 3 26 26 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46760 * 299.99892 * 1 2 3 28 28 H 1.09003 * 109.46760 * 240.00108 * 2 1 3 29 29 H 1.08994 * 109.46976 * 120.00320 * 2 1 3 30 30 H 0.97005 * 119.99902 * 180.02562 * 7 6 4 31 31 H 1.08998 * 110.30473 * 338.59807 * 16 14 12 32 32 H 1.08998 * 110.30972 * 100.66524 * 16 14 12 33 33 H 1.09001 * 109.91750 * 118.13019 * 17 16 14 34 34 H 1.09004 * 109.91672 * 239.22500 * 17 16 14 35 35 H 1.09002 * 109.46749 * 189.86832 * 19 18 17 36 36 H 1.08995 * 109.47249 * 309.87014 * 19 18 17 37 37 H 1.09001 * 110.66911 * 202.36409 * 24 18 17 38 38 H 1.09001 * 110.66953 * 79.22879 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2255 2.0351 1.1871 5 1 2.8330 2.9276 1.2132 6 6 1.6491 1.5526 2.3557 7 7 0.9429 0.4446 2.3313 8 14 1.8781 2.4790 3.9616 9 1 2.7088 3.6863 3.7225 10 1 0.5520 2.8870 4.4912 11 1 2.5557 1.5997 4.9481 12 6 2.2640 2.0092 -1.1669 13 8 2.7487 3.1210 -1.1670 14 6 1.9363 1.3299 -2.4717 15 1 1.0300 0.7318 -2.3765 16 6 3.1206 0.4570 -2.9465 17 6 3.1868 0.6639 -4.4710 18 7 2.0813 1.5772 -4.8334 19 6 2.4650 2.4512 -5.9500 20 6 2.5759 1.6225 -7.2315 21 9 1.3414 1.0257 -7.5092 22 9 2.9407 2.4550 -8.2950 23 9 3.5463 0.6292 -7.0619 24 6 1.7941 2.3704 -3.6109 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.5402 0.1080 3.1471 31 1 4.0472 0.7899 -2.4790 32 1 2.9352 -0.5915 -2.7132 33 1 4.1426 1.1113 -4.7439 34 1 3.0652 -0.2917 -4.9811 35 1 1.7087 3.2250 -6.0821 36 1 3.4267 2.9162 -5.7336 37 1 0.7810 2.7712 -3.6415 38 1 2.5228 3.1723 -3.4926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348168530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:46 Heat of formation + Delta-G solvation = -182.888004 kcal Electronic energy + Delta-G solvation = -24855.918804 eV Core-core repulsion = 20704.405000 eV Total energy + Delta-G solvation = -4151.513804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.03467 -48.59067 -48.48064 -41.11359 -39.20885 -37.02603 -34.25044 -33.32887 -31.22139 -30.07043 -29.27090 -26.83675 -24.30344 -24.03255 -22.99285 -22.14149 -20.30711 -19.51821 -19.42382 -18.87052 -18.36964 -17.92484 -16.97700 -16.76258 -15.96530 -15.70453 -15.44928 -15.44389 -15.22537 -14.99622 -14.93280 -14.69032 -14.66474 -14.59354 -14.22088 -14.15548 -13.83922 -13.55372 -13.17994 -12.84759 -12.77812 -12.65259 -12.47627 -12.33819 -12.14304 -12.07112 -11.96658 -11.80210 -11.54825 -10.71950 -10.29143 -9.72287 -9.58132 -8.16112 -5.89490 1.37070 1.43695 1.55462 1.72419 2.01836 2.27243 2.49311 2.86383 3.06855 3.11271 3.16991 3.41555 3.57076 3.81103 3.95766 4.15738 4.21395 4.29203 4.34607 4.44391 4.58281 4.67403 4.79765 4.88502 4.98556 5.01447 5.07369 5.09450 5.24723 5.43928 5.54932 5.63442 5.67338 6.07349 6.14940 6.59370 7.21445 7.54722 8.07222 8.70504 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.038114 B = 0.003564 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.455391 B = 7855.365384 C = 8133.187171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.129 3.871 3 N -0.454 5.454 4 C -0.337 4.337 5 H 0.070 0.930 6 C -0.002 4.002 7 N -0.878 5.878 8 Si 0.986 3.014 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.270 1.270 12 C 0.445 3.555 13 O -0.637 6.637 14 C -0.098 4.098 15 H 0.104 0.896 16 C -0.113 4.113 17 C 0.037 3.963 18 N -0.514 5.514 19 C -0.001 4.001 20 C 0.463 3.537 21 F -0.181 7.181 22 F -0.184 7.184 23 F -0.187 7.187 24 C 0.067 3.933 25 H 0.024 0.976 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.270 0.730 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 -2.537 -14.719 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.006 3.994 3 N -0.172 5.172 4 C -0.465 4.465 5 H 0.088 0.912 6 C -0.203 4.203 7 N -0.517 5.517 8 Si 0.811 3.189 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.196 1.196 12 C 0.234 3.766 13 O -0.526 6.526 14 C -0.120 4.120 15 H 0.122 0.878 16 C -0.151 4.151 17 C -0.091 4.091 18 N -0.239 5.239 19 C -0.131 4.131 20 C 0.409 3.591 21 F -0.163 7.163 22 F -0.166 7.166 23 F -0.169 7.169 24 C -0.060 4.060 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.156 0.844 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.508 -2.471 -14.744 14.958 hybrid contribution 0.804 0.775 1.048 1.532 sum 1.312 -1.696 -13.696 13.862 Atomic orbital electron populations 1.22176 0.95858 1.00827 1.00671 1.21520 0.95329 0.81832 1.00688 1.44012 1.56056 1.12663 1.04437 1.19671 1.30743 1.10244 0.85851 0.91212 1.25914 0.95182 0.97419 1.01796 1.70237 1.32702 1.20218 1.28588 0.84969 0.78046 0.78055 0.77802 1.20572 1.19941 1.19559 1.20606 0.83714 0.86299 0.86001 1.90456 1.51203 1.22977 1.87975 1.22019 1.00964 0.97614 0.91404 0.87784 1.22358 0.96773 1.00765 0.95246 1.23118 0.92690 0.98497 0.94756 1.64718 1.37519 1.16671 1.04956 1.23500 1.06194 0.95367 0.88063 1.20441 0.73440 0.78877 0.86371 1.93189 1.43504 1.84976 1.94626 1.93183 1.91769 1.71710 1.59932 1.93166 1.64167 1.64114 1.95425 1.22918 1.02405 0.94489 0.86217 0.95721 0.92382 0.91210 0.92374 0.89701 0.91971 0.92590 0.88778 0.92320 0.88236 0.84441 0.88730 0.88829 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.56 9.39 71.98 0.68 -4.88 16 2 C 0.13 5.53 4.96 86.38 0.43 5.96 16 3 N -0.45 -22.73 2.62 -635.55 -1.67 -24.39 16 4 C -0.34 -18.67 9.44 84.04 0.79 -17.88 16 5 H 0.07 4.20 7.27 -2.91 -0.02 4.17 16 6 C 0.00 -0.11 5.38 84.93 0.46 0.35 16 7 N -0.88 -43.10 7.23 21.66 0.16 -42.94 16 8 Si 0.99 41.65 29.55 68.60 2.03 43.67 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 12 C 0.44 21.04 6.71 87.66 0.59 21.62 16 13 O -0.64 -34.94 15.41 -3.07 -0.05 -34.98 16 14 C -0.10 -3.41 2.44 -10.33 -0.03 -3.44 16 15 H 0.10 3.49 5.99 -2.39 -0.01 3.48 16 16 C -0.11 -3.29 6.00 31.47 0.19 -3.10 16 17 C 0.04 0.89 5.10 86.44 0.44 1.33 16 18 N -0.51 -12.69 5.19 -883.01 -4.58 -17.28 16 19 C 0.00 -0.03 4.88 86.31 0.42 0.40 16 20 C 0.46 9.35 3.27 71.98 0.24 9.59 16 21 F -0.18 -4.15 17.24 44.97 0.78 -3.37 16 22 F -0.18 -3.64 17.32 44.97 0.78 -2.87 16 23 F -0.19 -4.02 14.72 44.97 0.66 -3.36 16 24 C 0.07 2.03 5.81 86.65 0.50 2.53 16 25 H 0.02 0.92 7.02 -2.38 -0.02 0.91 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 3.28 5.77 -2.39 -0.01 3.27 16 28 H 0.06 2.12 5.63 -2.39 -0.01 2.10 16 29 H 0.08 4.02 6.12 -2.39 -0.01 4.01 16 30 H 0.27 12.48 8.31 -92.70 -0.77 11.71 16 31 H 0.06 1.82 7.84 -2.39 -0.02 1.81 16 32 H 0.09 2.41 7.40 -2.39 -0.02 2.40 16 33 H 0.06 1.33 7.30 -2.39 -0.02 1.32 16 34 H 0.10 2.17 7.51 -2.38 -0.02 2.15 16 35 H 0.14 2.19 8.11 -2.39 -0.02 2.17 16 36 H 0.09 1.67 7.82 -2.39 -0.02 1.65 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.05 1.82 7.11 -2.39 -0.02 1.80 16 Total: -1.00 -61.55 309.45 3.90 -57.65 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.09 Total: 15.39 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 4.71 Total: 12.48 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -6.09 Total: -84.61 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.05 Total: -34.98 kcal Atomic # 9 Polarization: -11.82 SS G_CDS: 2.22 Total: -9.60 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -61.55 3.90 -57.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348168530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.239 kcal (2) G-P(sol) polarization free energy of solvation -61.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds